Wall clock time and date at job start Mon Mar 30 2020 01:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53031 * 109.46224 * 2 1 4 4 C 1.53194 * 109.31450 * 178.62913 * 3 2 1 5 5 N 1.46923 * 108.77405 * 54.63291 * 4 3 2 6 6 C 1.37484 * 120.63086 * 126.37614 * 5 4 3 7 7 N 1.30347 * 120.00211 * 185.70295 * 6 5 4 8 8 N 1.37485 * 120.00120 * 5.69971 * 6 5 4 9 9 C 1.46499 * 120.00226 * 175.03112 * 8 6 5 10 10 C 1.52994 * 109.47158 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47371 * 300.00227 * 10 9 8 12 12 C 1.53003 * 109.47267 * 59.99732 * 10 9 8 13 13 C 1.50701 * 109.47151 * 179.97438 * 10 9 8 14 14 H 1.07998 * 119.99851 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99778 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00328 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99633 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47235 * 60.00017 * 17 15 13 19 19 H 1.48500 * 109.47141 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47182 * 299.99940 * 17 15 13 21 21 C 1.46932 * 118.73995 * 306.64528 * 5 4 3 22 22 C 1.52754 * 109.00622 * 53.31016 * 21 5 4 23 23 H 1.09002 * 109.46564 * 59.99615 * 1 2 3 24 24 H 1.08993 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46568 * 300.00403 * 1 2 3 26 26 H 1.09002 * 109.45586 * 119.97739 * 2 1 3 27 27 H 1.08997 * 109.50084 * 58.67974 * 3 2 1 28 28 H 1.08999 * 109.49921 * 298.57797 * 3 2 1 29 29 H 1.09007 * 109.58515 * 294.84898 * 4 3 2 30 30 H 1.09000 * 109.70858 * 174.49382 * 4 3 2 31 31 H 0.96996 * 119.99519 * 5.24639 * 7 6 5 32 32 H 0.97002 * 119.99550 * 355.02977 * 8 6 5 33 33 H 1.08998 * 109.46933 * 59.99887 * 9 8 6 34 34 H 1.09002 * 109.46984 * 300.00068 * 9 8 6 35 35 H 1.09000 * 109.47263 * 59.99607 * 11 10 9 36 36 H 1.08997 * 109.47232 * 180.02562 * 11 10 9 37 37 H 1.09003 * 109.46552 * 299.99779 * 11 10 9 38 38 H 1.09002 * 109.46763 * 59.99901 * 12 10 9 39 39 H 1.08997 * 109.47256 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.47062 * 300.00206 * 12 10 9 41 41 H 0.96995 * 120.00223 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.58619 * 173.14743 * 21 5 4 43 43 H 1.08999 * 109.58195 * 293.56719 * 21 5 4 44 44 H 1.09003 * 109.56447 * 185.55412 * 22 21 5 45 45 H 1.09001 * 109.36198 * 65.50177 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4429 0.0000 4 6 3.5715 1.4391 0.0346 5 7 4.0676 0.6237 -1.0824 6 6 4.9790 1.1378 -1.9742 7 7 5.3270 0.4455 -3.0224 8 7 5.5233 2.3821 -1.7605 9 6 6.5738 2.8846 -2.6494 10 6 7.0012 4.2816 -2.1950 11 6 5.7973 5.2245 -2.2440 12 6 7.5355 4.2109 -0.7630 13 6 8.0822 4.7983 -3.1090 14 1 8.4293 4.1912 -3.9320 15 6 8.6274 6.0466 -2.8951 16 7 8.2044 6.7861 -1.8933 17 14 9.9668 6.6874 -4.0286 18 1 9.4485 6.7556 -5.4185 19 1 10.3819 8.0432 -3.5874 20 1 11.1356 5.7724 -3.9805 21 6 3.5668 -0.7495 -1.2318 22 6 2.0396 -0.7230 -1.2490 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8931 -0.5135 0.8903 27 1 1.6576 1.9639 0.8777 28 1 1.6977 1.9497 -0.9023 29 1 3.9146 1.0140 0.9779 30 1 3.9439 2.4587 -0.0636 31 1 4.8879 -0.3978 -3.2142 32 1 5.2117 2.9272 -1.0211 33 1 6.1929 2.9354 -3.6694 34 1 7.4313 2.2126 -2.6148 35 1 5.0157 4.8506 -1.5826 36 1 6.1020 6.2199 -1.9206 37 1 5.4167 5.2749 -3.2641 38 1 8.3932 3.5391 -0.7280 39 1 7.8404 5.2060 -0.4394 40 1 6.7539 3.8369 -0.1016 41 1 8.5881 7.6641 -1.7426 42 1 3.9341 -1.1728 -2.1667 43 1 3.9096 -1.3566 -0.3939 44 1 1.6569 -1.7435 -1.2602 45 1 1.6973 -0.1958 -2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414359957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:51 Heat of formation + Delta-G solvation = 9.945272 kcal Electronic energy + Delta-G solvation = -21399.897589 eV Core-core repulsion = 18451.751014 eV Total energy + Delta-G solvation = -2948.146575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67290 -38.76546 -36.98096 -34.55089 -33.14534 -32.67871 -31.15523 -28.75149 -27.54608 -27.37431 -26.42333 -24.03448 -23.96698 -21.45535 -20.57151 -20.45352 -18.77025 -17.81225 -16.89636 -16.59805 -15.87931 -15.63530 -15.55511 -15.18218 -15.00630 -14.97922 -14.59044 -14.30214 -13.99467 -13.53445 -13.40989 -13.02973 -13.02299 -12.73721 -12.70776 -12.57857 -12.43274 -12.20719 -12.10760 -12.09220 -11.71790 -11.37974 -11.34209 -11.27911 -11.07639 -10.68571 -10.35675 -10.12075 -9.28412 -8.75922 -7.98884 -6.14348 1.46313 1.46640 1.53798 1.88178 2.20221 2.48476 2.94858 3.24325 3.80219 3.80566 3.89782 4.15473 4.34720 4.37560 4.50095 4.55461 4.64639 4.65637 4.74915 4.76667 4.79194 4.90885 4.95432 4.95939 5.07031 5.07945 5.10361 5.12680 5.18007 5.23175 5.25860 5.37002 5.48203 5.53117 5.69491 5.69985 5.77313 6.09160 6.18001 6.23912 6.44605 6.59143 6.90502 7.03153 7.52899 8.06059 8.99991 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.038466 B = 0.003993 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.744133 B = 7010.209927 C = 7393.701418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.125 4.125 4 C 0.112 3.888 5 N -0.656 5.656 6 C 0.635 3.365 7 N -0.869 5.869 8 N -0.717 5.717 9 C 0.187 3.813 10 C 0.049 3.951 11 C -0.115 4.115 12 C -0.115 4.115 13 C -0.527 4.527 14 H 0.044 0.956 15 C 0.028 3.972 16 N -0.900 5.900 17 Si 0.946 3.054 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.277 1.277 21 C 0.123 3.877 22 C -0.123 4.123 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.335 0.665 32 H 0.403 0.597 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.030 0.970 36 H 0.062 0.938 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.061 0.939 40 H 0.030 0.970 41 H 0.260 0.740 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.914 -12.515 7.597 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.163 4.163 4 C -0.012 4.012 5 N -0.384 5.384 6 C 0.270 3.730 7 N -0.521 5.521 8 N -0.362 5.362 9 C 0.063 3.937 10 C 0.048 3.952 11 C -0.173 4.173 12 C -0.173 4.173 13 C -0.566 4.566 14 H 0.063 0.937 15 C -0.172 4.172 16 N -0.539 5.539 17 Si 0.772 3.228 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.202 1.202 21 C 0.000 4.000 22 C -0.161 4.161 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.242 0.758 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.134 -12.168 6.921 19.893 hybrid contribution 0.146 0.239 -0.126 0.307 sum -13.989 -11.929 6.796 19.600 Atomic orbital electron populations 1.21791 0.94171 1.02252 1.01811 1.21082 0.96275 0.95087 0.98137 1.21963 0.94101 0.97685 1.02595 1.21639 0.94979 0.95048 0.89554 1.47736 1.46280 1.14810 1.29573 1.19021 0.82815 0.86056 0.85158 1.69876 1.41212 1.18442 1.22618 1.44283 1.42595 1.14314 1.34990 1.20892 0.87160 0.94424 0.91270 1.18387 0.93440 0.89597 0.93733 1.21615 0.95979 1.02078 0.97613 1.21618 0.97686 1.01131 0.96871 1.21257 1.20538 1.01637 1.13176 0.93741 1.25461 0.98395 0.96818 0.96512 1.69904 1.43069 1.10989 1.29960 0.85813 0.80055 0.77361 0.79548 1.20255 1.20803 1.20235 1.21472 0.94738 0.81536 1.02293 1.21887 0.93988 1.01939 0.98312 0.93486 0.91751 0.91955 0.90121 0.89281 0.93109 0.90701 0.91560 0.84649 0.75789 0.95190 0.95317 0.95131 0.91965 0.96551 0.96485 0.91978 0.95068 0.93081 0.90964 0.90712 0.88886 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.19 71.98 0.66 -1.04 16 2 C -0.09 -1.22 2.68 -10.77 -0.03 -1.25 16 3 C -0.12 -2.12 5.36 30.67 0.16 -1.96 16 4 C 0.11 2.37 6.42 86.36 0.55 2.92 16 5 N -0.66 -16.96 3.05 -706.84 -2.16 -19.12 16 6 C 0.63 22.10 8.42 260.53 2.19 24.30 16 7 N -0.87 -33.13 13.21 -58.53 -0.77 -33.90 16 8 N -0.72 -26.72 4.97 -349.41 -1.74 -28.46 16 9 C 0.19 8.42 4.50 86.38 0.39 8.81 16 10 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 11 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 12 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 13 C -0.53 -28.77 8.01 25.60 0.21 -28.57 16 14 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 15 C 0.03 1.49 5.15 84.66 0.44 1.92 16 16 N -0.90 -48.96 9.35 21.45 0.20 -48.76 16 17 Si 0.95 43.43 29.54 68.60 2.03 45.45 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 C 0.12 2.47 6.42 86.22 0.55 3.02 16 22 C -0.12 -1.94 5.34 30.53 0.16 -1.78 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.07 1.54 5.72 -2.39 -0.01 1.52 16 31 H 0.34 11.16 6.30 -92.71 -0.58 10.58 16 32 H 0.40 13.74 3.79 -92.71 -0.35 13.39 16 33 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 36 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 40 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 41 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 42 H 0.07 1.56 5.65 -2.39 -0.01 1.55 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -60.29 336.97 4.02 -56.27 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.03 Total: 29.31 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.43 Total: -0.79 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -4.47 Total: -130.24 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -60.29 4.02 -56.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414359957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.215 kcal (2) G-P(sol) polarization free energy of solvation -60.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds