Wall clock time and date at job start Mon Mar 30 2020 00:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47326 * 2 1 4 4 C 1.46503 * 120.00192 * 271.82151 * 3 2 1 5 5 C 1.50698 * 109.46754 * 275.87156 * 4 3 2 6 6 H 1.07994 * 120.00665 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99572 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00277 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00232 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46827 * 89.99926 * 9 7 5 11 11 H 1.48491 * 109.47402 * 210.00074 * 9 7 5 12 12 H 1.48501 * 109.47123 * 330.00624 * 9 7 5 13 13 C 1.34777 * 119.99833 * 91.82065 * 3 2 1 14 14 O 1.21286 * 120.00228 * 5.12727 * 13 3 2 15 15 C 1.50696 * 120.00111 * 185.11904 * 13 3 2 16 16 H 1.09002 * 109.46874 * 45.15275 * 15 13 3 17 17 C 1.53002 * 109.47459 * 285.15413 * 15 13 3 18 18 C 1.53002 * 109.46654 * 299.99430 * 17 15 13 19 19 C 1.52997 * 109.47658 * 300.00135 * 18 17 15 20 20 H 1.09001 * 109.47007 * 300.00667 * 19 18 17 21 21 C 1.52994 * 109.47460 * 179.97438 * 19 18 17 22 22 C 1.52999 * 109.47062 * 59.99669 * 19 18 17 23 23 H 1.09000 * 109.46949 * 60.00099 * 22 19 18 24 24 C 1.53002 * 109.47364 * 180.02562 * 22 19 18 25 25 C 1.52998 * 109.47562 * 300.00321 * 22 19 18 26 26 H 1.08998 * 109.47105 * 303.36267 * 1 2 3 27 27 H 1.08998 * 109.47511 * 63.35788 * 1 2 3 28 28 H 1.08996 * 109.47833 * 183.35927 * 1 2 3 29 29 H 1.09002 * 109.46785 * 239.99816 * 2 1 3 30 30 H 1.08996 * 109.47245 * 120.00546 * 2 1 3 31 31 H 1.08998 * 109.46920 * 35.86557 * 4 3 2 32 32 H 1.08996 * 109.46918 * 155.86832 * 4 3 2 33 33 H 0.96996 * 120.00563 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46789 * 180.02562 * 17 15 13 35 35 H 1.08999 * 109.47223 * 59.99514 * 17 15 13 36 36 H 1.09002 * 109.46826 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.46751 * 60.00280 * 18 17 15 38 38 H 1.09000 * 109.46856 * 300.00088 * 21 19 18 39 39 H 1.09006 * 109.46682 * 60.00137 * 21 19 18 40 40 H 1.08999 * 109.47176 * 179.97438 * 21 19 18 41 41 H 1.09000 * 109.46657 * 60.00385 * 24 22 19 42 42 H 1.08993 * 109.47053 * 180.02562 * 24 22 19 43 43 H 1.09002 * 109.46956 * 300.00466 * 24 22 19 44 44 H 1.08997 * 109.47394 * 179.97438 * 25 22 19 45 45 H 1.09000 * 109.47276 * 300.00115 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2245 2.0853 -1.2681 5 6 3.5829 1.7378 -1.8204 6 1 4.2283 1.0607 -1.2807 7 6 4.0022 2.2853 -3.0143 8 7 5.1879 1.9826 -3.4961 9 14 2.8863 3.4572 -3.9476 10 1 3.1481 4.8496 -3.5029 11 1 3.1558 3.3435 -5.4034 12 1 1.4678 3.1100 -3.6781 13 6 2.2779 2.0041 1.1666 14 8 2.1968 1.3935 2.2114 15 6 2.6691 3.4594 1.1730 16 1 2.0092 4.0159 0.5075 17 6 4.1150 3.6010 0.6930 18 6 5.0412 2.8199 1.6273 19 6 4.9188 3.3747 3.0479 20 1 5.2016 4.4274 3.0525 21 6 5.8445 2.5932 3.9823 22 6 3.4729 3.2332 3.5278 23 1 3.1900 2.1806 3.5232 24 6 3.3502 3.7885 4.9482 25 6 2.5466 4.0143 2.5936 26 1 -0.3633 0.5651 0.8583 27 1 -0.3634 0.4608 -0.9185 28 1 -0.3634 -1.0258 0.0602 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.4554 1.7849 -1.9796 32 1 2.1645 3.1606 -1.1005 33 1 5.4828 2.3674 -4.3362 34 1 4.3980 4.6536 0.6981 35 1 4.2023 3.2057 -0.3190 36 1 6.0713 2.9204 1.2852 37 1 4.7583 1.7673 1.6227 38 1 5.5611 1.5407 3.9776 39 1 6.8747 2.6937 3.6405 40 1 5.7576 2.9888 4.9942 41 1 3.6330 4.8412 4.9523 42 1 2.3203 3.6873 5.2902 43 1 4.0102 3.2324 5.6140 44 1 1.5165 3.9131 2.9352 45 1 2.8295 5.0669 2.5982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448772221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:30 Heat of formation + Delta-G solvation = -77.595069 kcal Electronic energy + Delta-G solvation = -22566.085584 eV Core-core repulsion = 19581.850224 eV Total energy + Delta-G solvation = -2984.235360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66973 -38.92953 -36.92316 -34.75052 -34.17768 -32.79577 -31.89011 -29.53867 -28.24082 -26.63922 -24.62129 -24.44476 -22.68711 -22.13143 -20.84404 -19.40763 -18.97461 -17.73250 -17.01474 -16.57933 -16.12603 -15.41103 -15.27536 -15.06963 -14.90468 -14.73242 -14.67439 -14.29152 -13.73912 -13.55594 -13.46899 -13.21814 -12.98500 -12.79792 -12.66281 -12.59662 -12.58166 -12.37637 -12.27644 -12.20604 -12.06019 -11.84605 -11.68462 -11.60268 -11.36262 -10.85950 -10.75776 -10.59376 -10.04113 -9.34953 -8.26609 -6.30573 1.40606 1.42658 1.51208 1.83279 2.35672 2.37409 3.06555 3.67425 3.85915 3.89867 3.99777 4.18334 4.24731 4.38821 4.39812 4.45270 4.52840 4.56975 4.63726 4.72604 4.75406 4.82752 4.85586 4.93275 4.94495 4.95595 5.00001 5.02800 5.07931 5.12876 5.16312 5.22820 5.28974 5.33314 5.41705 5.47154 5.55885 5.60348 5.67872 5.78290 5.91518 6.25064 6.69117 6.76771 7.28953 7.46469 8.89239 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.007492 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.449832 B = 3736.329194 C = 4487.149234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.215 3.785 5 C -0.524 4.524 6 H 0.030 0.970 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.932 3.068 10 H -0.259 1.259 11 H -0.288 1.288 12 H -0.241 1.241 13 C 0.520 3.480 14 O -0.578 6.578 15 C -0.102 4.102 16 H 0.096 0.904 17 C -0.128 4.128 18 C -0.103 4.103 19 C -0.079 4.079 20 H 0.077 0.923 21 C -0.143 4.143 22 C -0.109 4.109 23 H 0.084 0.916 24 C -0.137 4.137 25 C -0.086 4.086 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.267 0.733 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.025 0.975 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.409 5.459 10.292 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 N -0.329 5.329 4 C 0.093 3.907 5 C -0.562 4.562 6 H 0.048 0.952 7 C -0.176 4.176 8 N -0.579 5.579 9 Si 0.755 3.245 10 H -0.184 1.184 11 H -0.214 1.214 12 H -0.164 1.164 13 C 0.310 3.690 14 O -0.460 6.460 15 C -0.123 4.123 16 H 0.114 0.886 17 C -0.165 4.165 18 C -0.141 4.141 19 C -0.097 4.097 20 H 0.095 0.905 21 C -0.200 4.200 22 C -0.127 4.127 23 H 0.102 0.898 24 C -0.194 4.194 25 C -0.124 4.124 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.348 5.152 10.664 13.437 hybrid contribution 0.205 -0.063 -1.089 1.110 sum -6.143 5.089 9.575 12.463 Atomic orbital electron populations 1.21997 0.94178 1.02948 1.01633 1.21347 0.95360 0.82977 1.01889 1.48058 1.63874 1.14173 1.06844 1.19681 0.95499 0.93578 0.81970 1.21331 1.00830 1.27997 1.06076 0.95197 1.25696 0.96163 0.97964 0.97799 1.70047 1.20911 1.45730 1.21259 0.85942 0.80755 0.79996 0.77817 1.18401 1.21379 1.16388 1.20937 0.75098 0.90297 0.82619 1.90433 1.55049 1.68611 1.31899 1.21327 0.98847 0.92041 1.00115 0.88591 1.21784 0.92131 1.01179 1.01415 1.21423 0.98665 0.98149 0.95814 1.21124 0.95525 0.99758 0.93299 0.90512 1.21837 0.98821 0.99393 0.99943 1.21552 0.93795 1.02421 0.94921 0.89810 1.21793 1.01301 1.00968 0.95362 1.21394 0.99748 0.99551 0.91680 0.93447 0.92271 0.89815 0.91278 0.91880 0.94341 0.93316 0.92391 0.90303 0.89849 0.93100 0.95648 0.94550 0.92791 0.90816 0.91984 0.93116 0.92386 0.92225 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 10.24 71.98 0.74 -3.60 16 2 C 0.11 3.93 6.20 86.38 0.54 4.47 16 3 N -0.60 -24.34 2.46 -826.18 -2.03 -26.38 16 4 C 0.21 9.16 3.75 85.63 0.32 9.48 16 5 C -0.52 -27.27 7.49 25.60 0.19 -27.08 16 6 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 7 C 0.02 1.21 5.47 84.65 0.46 1.67 16 8 N -0.94 -54.94 13.96 21.45 0.30 -54.64 16 9 Si 0.93 39.21 27.47 68.60 1.88 41.10 16 10 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 13 C 0.52 20.72 5.58 87.66 0.49 21.21 16 14 O -0.58 -24.69 12.72 -3.05 -0.04 -24.73 16 15 C -0.10 -3.50 2.16 -11.54 -0.02 -3.52 16 16 H 0.10 3.03 6.80 -2.39 -0.02 3.02 16 17 C -0.13 -4.69 5.21 30.60 0.16 -4.53 16 18 C -0.10 -3.78 4.98 30.59 0.15 -3.63 16 19 C -0.08 -2.32 2.25 -10.80 -0.02 -2.34 16 20 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 21 C -0.14 -3.83 8.84 71.98 0.64 -3.19 16 22 C -0.11 -3.23 1.96 -10.79 -0.02 -3.26 16 23 H 0.08 3.12 5.03 -2.39 -0.01 3.10 16 24 C -0.14 -3.20 8.84 71.98 0.64 -2.56 16 25 C -0.09 -2.48 4.50 30.60 0.14 -2.34 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 2.61 8.09 -2.39 -0.02 2.59 16 30 H 0.06 2.42 7.31 -2.39 -0.02 2.40 16 31 H 0.04 1.59 7.17 -2.39 -0.02 1.57 16 32 H 0.05 1.95 4.99 -2.39 -0.01 1.94 16 33 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.08 3.73 4.40 -2.39 -0.01 3.71 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.02 1.09 7.17 -2.39 -0.02 1.07 16 38 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.07 1.64 6.43 -2.39 -0.02 1.63 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.27 6.43 -2.39 -0.02 1.26 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -61.27 332.72 5.39 -55.88 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.89 Total: 28.02 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 4.39 Total: -19.24 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -1.73 Total: -81.01 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.88 Total: 41.10 kcal Total: -61.27 5.39 -55.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448772221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.717 kcal (2) G-P(sol) polarization free energy of solvation -61.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds