Wall clock time and date at job start Mon Mar 30 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46791 * 2 1 4 4 C 1.53001 * 115.55938 * 211.24758 * 3 2 1 5 5 C 1.53005 * 109.47099 * 40.14881 * 4 3 2 6 6 C 1.53003 * 109.46779 * 160.14919 * 4 3 2 7 7 C 1.52995 * 117.49774 * 356.93982 * 3 2 1 8 8 C 1.52995 * 60.00154 * 107.48743 * 7 3 2 9 9 H 1.09005 * 117.50196 * 107.50689 * 8 7 3 10 10 N 1.46901 * 117.49958 * 252.50786 * 8 7 3 11 11 C 1.46902 * 110.99818 * 223.60713 * 10 8 7 12 12 C 1.53004 * 109.46682 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47178 * 60.00165 * 12 11 10 14 14 C 1.53001 * 109.47160 * 299.99980 * 12 11 10 15 15 C 1.53003 * 109.47001 * 179.97438 * 12 11 10 16 16 C 1.50697 * 109.46961 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00216 * 359.97438 * 16 15 12 18 18 C 1.37881 * 119.99733 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00169 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00064 * 180.27527 * 18 16 15 21 21 H 1.48499 * 109.47132 * 269.72833 * 20 18 16 22 22 H 1.48502 * 109.47054 * 29.72201 * 20 18 16 23 23 H 1.48503 * 109.47454 * 149.72297 * 20 18 16 24 24 H 1.08998 * 109.47518 * 305.10436 * 1 2 3 25 25 H 1.09005 * 109.47172 * 65.10571 * 1 2 3 26 26 H 1.09005 * 109.47077 * 185.10027 * 1 2 3 27 27 H 1.08999 * 109.47388 * 240.00176 * 2 1 3 28 28 H 1.09001 * 109.47039 * 119.99829 * 2 1 3 29 29 H 1.09001 * 109.46899 * 280.14653 * 4 3 2 30 30 H 1.08995 * 109.47084 * 53.67902 * 5 4 3 31 31 H 1.08996 * 109.46775 * 173.68006 * 5 4 3 32 32 H 1.09004 * 109.46921 * 293.67891 * 5 4 3 33 33 H 1.09001 * 109.47187 * 299.99557 * 6 4 3 34 34 H 1.08994 * 109.47184 * 60.00141 * 6 4 3 35 35 H 1.09002 * 109.46409 * 180.02562 * 6 4 3 36 36 H 1.09000 * 117.50323 * 359.97438 * 7 3 2 37 37 H 1.09007 * 117.51324 * 214.96997 * 7 3 2 38 38 H 1.00899 * 110.99724 * 99.65563 * 10 8 7 39 39 H 1.08998 * 109.47116 * 60.00375 * 11 10 8 40 40 H 1.08995 * 109.47236 * 299.99754 * 11 10 8 41 41 H 1.09003 * 109.47206 * 179.97438 * 13 12 11 42 42 H 1.09001 * 109.47220 * 299.99689 * 13 12 11 43 43 H 1.09004 * 109.47517 * 59.99839 * 13 12 11 44 44 H 1.08997 * 109.46853 * 299.99832 * 14 12 11 45 45 H 1.09001 * 109.47157 * 60.00361 * 14 12 11 46 46 H 1.09003 * 109.46747 * 180.02562 * 14 12 11 47 47 H 1.09005 * 109.46857 * 59.99772 * 15 12 11 48 48 H 1.08997 * 109.46695 * 300.00370 * 15 12 11 49 49 H 0.97000 * 120.00572 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.3725 1.6717 -0.7160 5 6 3.4138 0.8355 -1.9966 6 6 3.5131 3.1536 -1.0698 7 6 0.9977 2.5603 -0.0724 8 6 1.7459 2.2958 1.2355 9 1 2.5017 3.0205 1.5385 10 7 0.9957 1.6672 2.3310 11 6 1.2859 2.3242 3.6125 12 6 0.4876 1.6439 4.7265 13 6 0.8828 0.1681 4.8090 14 6 -1.0079 1.7552 4.4234 15 6 0.7902 2.3276 6.0614 16 6 0.0045 1.6572 7.1587 17 1 -0.6460 0.8268 6.9271 18 6 0.1153 2.1047 8.4582 19 7 0.9070 3.1162 8.7401 20 14 -0.8528 1.2687 9.8196 21 1 -2.1709 1.9357 9.9710 22 1 -1.0583 -0.1610 9.4748 23 1 -0.0988 1.3668 11.0952 24 1 -0.3634 0.5910 0.8407 25 1 -0.3634 0.4326 -0.9322 26 1 -0.3633 -1.0236 0.0914 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.1922 1.3750 -0.0617 30 1 2.5324 1.0517 -2.6003 31 1 4.3117 1.0824 -2.5630 32 1 3.4266 -0.2236 -1.7388 33 1 2.6934 3.4504 -1.7241 34 1 3.4838 3.7493 -0.1575 35 1 4.4623 3.3167 -1.5802 36 1 -0.0513 2.2680 -0.1205 37 1 1.2611 3.4591 -0.6301 38 1 1.1882 0.6780 2.3801 39 1 1.0039 3.3754 3.5540 40 1 2.3513 2.2452 3.8283 41 1 0.3144 -0.3164 5.6029 42 1 0.6675 -0.3193 3.8581 43 1 1.9482 0.0887 5.0250 44 1 -1.2894 2.8066 4.3647 45 1 -1.2232 1.2678 3.4725 46 1 -1.5766 1.2710 5.2173 47 1 0.5091 3.3792 6.0029 48 1 1.8557 2.2479 6.2771 49 1 0.9847 3.4313 9.6542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453614603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:09 Heat of formation + Delta-G solvation = -6.258101 kcal Electronic energy + Delta-G solvation = -21649.678583 eV Core-core repulsion = 18804.369721 eV Total energy + Delta-G solvation = -2845.308862 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.81329 -37.19885 -34.18368 -32.69571 -31.91474 -30.56163 -27.27652 -26.87550 -26.31182 -25.11547 -24.74039 -22.50228 -21.79892 -20.74102 -18.32701 -17.63650 -16.35437 -16.15497 -15.70927 -14.68999 -14.60055 -14.19277 -13.93086 -13.58580 -13.36151 -13.09700 -12.92562 -12.64717 -12.42259 -12.33428 -11.98511 -11.85545 -11.72598 -11.43725 -11.34801 -11.19643 -10.94658 -10.91893 -10.81899 -10.74995 -10.53140 -10.48927 -10.28374 -10.14540 -9.95014 -9.65101 -9.51235 -8.96477 -8.79063 -8.29873 -7.88922 -5.94417 -3.94452 3.34582 3.41063 3.43821 3.83188 4.26696 4.51071 4.63961 4.75264 4.85779 4.94138 5.21176 5.32622 5.37457 5.41263 5.41839 5.46492 5.58492 5.64401 5.67150 5.73207 5.80325 5.83061 5.89513 5.90854 5.96042 6.01939 6.08929 6.13428 6.20882 6.23816 6.31406 6.34822 6.38399 6.49705 6.55906 6.68920 6.82217 6.85419 7.23523 7.27791 7.29295 7.48368 7.70708 7.74582 7.88333 8.06040 8.50539 9.10980 9.68239 11.17277 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035156 B = 0.003732 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.262881 B = 7499.973907 C = 7827.112711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.058 4.058 5 C -0.144 4.144 6 C -0.150 4.150 7 C -0.171 4.171 8 C 0.030 3.970 9 H 0.094 0.906 10 N -0.653 5.653 11 C 0.071 3.929 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.115 4.115 15 C 0.034 3.966 16 C -0.506 4.506 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.274 1.274 23 H -0.288 1.288 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.340 0.660 39 H 0.066 0.934 40 H 0.023 0.977 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.041 0.959 46 H 0.054 0.946 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.403 -3.782 -20.379 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.125 4.125 3 C -0.135 4.135 4 C -0.077 4.077 5 C -0.201 4.201 6 C -0.207 4.207 7 C -0.209 4.209 8 C -0.081 4.081 9 H 0.111 0.889 10 N -0.285 5.285 11 C -0.057 4.057 12 C -0.059 4.059 13 C -0.186 4.186 14 C -0.173 4.173 15 C -0.003 4.003 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.199 1.199 23 H -0.214 1.214 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.163 0.837 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.897 -3.328 -20.316 20.790 hybrid contribution 0.475 -0.585 1.092 1.326 sum 3.371 -3.913 -19.225 19.906 Atomic orbital electron populations 1.22017 0.95350 1.01567 1.02948 1.20992 0.96257 0.93629 1.01600 1.21947 0.96352 0.93194 1.02041 1.20557 0.95458 0.95497 0.96188 1.21852 1.01390 0.99748 0.97084 1.21975 1.01356 0.95865 1.01540 1.23569 0.98058 0.98767 1.00473 1.22532 0.98180 1.00466 0.86876 0.88880 1.60382 1.57371 1.07372 1.03411 1.22159 0.97208 0.98560 0.87815 1.20630 0.94919 0.94863 0.95442 1.21772 1.00529 0.96602 0.99732 1.21593 0.95578 1.00508 0.99584 1.19118 0.96580 0.95381 0.89266 1.21242 1.25338 1.15881 0.91996 0.92300 1.25016 0.95599 0.95201 0.98789 1.69966 1.38181 1.26218 1.19415 0.86668 0.80056 0.79953 0.81761 1.20792 1.19944 1.21408 0.89761 0.93179 0.93469 0.91375 0.92275 0.91354 0.92562 0.93052 0.92473 0.92195 0.92520 0.92962 0.87951 0.89015 0.83749 0.91523 0.95845 0.91697 0.94921 0.94122 0.94163 0.93958 0.92747 0.96691 0.96949 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.33 37.16 0.31 -1.41 16 2 C -0.09 -0.90 5.24 -26.73 -0.14 -1.04 16 3 C -0.13 -1.42 2.39 -154.51 -0.37 -1.79 16 4 C -0.06 -0.55 3.15 -90.62 -0.29 -0.83 16 5 C -0.14 -1.17 8.24 37.16 0.31 -0.86 16 6 C -0.15 -1.32 7.87 37.16 0.29 -1.03 16 7 C -0.17 -1.93 8.59 -26.74 -0.23 -2.16 16 8 C 0.03 0.39 5.56 -67.71 -0.38 0.01 16 9 H 0.09 1.24 6.99 -51.93 -0.36 0.87 16 10 N -0.65 -9.51 4.26 -106.72 -0.46 -9.96 16 11 C 0.07 1.24 4.50 -3.82 -0.02 1.23 16 12 C -0.06 -1.16 0.60 -154.50 -0.09 -1.26 16 13 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 14 C -0.12 -2.25 8.07 37.16 0.30 -1.95 16 15 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 16 C -0.51 -13.92 7.65 -34.44 -0.26 -14.18 16 17 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 20 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H 0.08 1.04 5.41 -51.93 -0.28 0.76 16 25 H 0.05 0.50 7.59 -51.93 -0.39 0.11 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.63 5.58 -51.93 -0.29 0.34 16 28 H 0.06 0.65 7.30 -51.93 -0.38 0.27 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.45 6.64 -51.93 -0.34 0.11 16 33 H 0.06 0.51 6.71 -51.93 -0.35 0.16 16 34 H 0.06 0.53 6.93 -51.93 -0.36 0.17 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 1.22 5.83 -51.93 -0.30 0.92 16 37 H 0.09 0.95 5.89 -51.92 -0.31 0.64 16 38 H 0.34 4.85 4.79 -39.29 -0.19 4.67 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 42 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 46 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 47 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -28.37 356.60 -8.91 -37.28 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -9.06 Total: 2.09 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -0.48 Total: -25.19 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.28 Total: -36.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.37 -8.91 -37.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453614603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.023 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds