Wall clock time and date at job start Mon Mar 30 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46791 * 2 1 4 4 C 1.53001 * 115.55938 * 211.24758 * 3 2 1 5 5 C 1.53005 * 109.47099 * 40.14881 * 4 3 2 6 6 C 1.53003 * 109.46779 * 160.14919 * 4 3 2 7 7 C 1.52995 * 117.49774 * 356.93982 * 3 2 1 8 8 C 1.52995 * 60.00154 * 107.48743 * 7 3 2 9 9 H 1.09005 * 117.50196 * 107.50689 * 8 7 3 10 10 N 1.46901 * 117.49958 * 252.50786 * 8 7 3 11 11 C 1.46902 * 110.99818 * 223.60713 * 10 8 7 12 12 C 1.53004 * 109.46682 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47178 * 60.00165 * 12 11 10 14 14 C 1.53001 * 109.47160 * 299.99980 * 12 11 10 15 15 C 1.53003 * 109.47001 * 179.97438 * 12 11 10 16 16 C 1.50697 * 109.46961 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00216 * 359.97438 * 16 15 12 18 18 C 1.37881 * 119.99733 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00169 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00064 * 180.27527 * 18 16 15 21 21 H 1.48499 * 109.47132 * 269.72833 * 20 18 16 22 22 H 1.48502 * 109.47054 * 29.72201 * 20 18 16 23 23 H 1.48503 * 109.47454 * 149.72297 * 20 18 16 24 24 H 1.08998 * 109.47518 * 305.10436 * 1 2 3 25 25 H 1.09005 * 109.47172 * 65.10571 * 1 2 3 26 26 H 1.09005 * 109.47077 * 185.10027 * 1 2 3 27 27 H 1.08999 * 109.47388 * 240.00176 * 2 1 3 28 28 H 1.09001 * 109.47039 * 119.99829 * 2 1 3 29 29 H 1.09001 * 109.46899 * 280.14653 * 4 3 2 30 30 H 1.08995 * 109.47084 * 53.67902 * 5 4 3 31 31 H 1.08996 * 109.46775 * 173.68006 * 5 4 3 32 32 H 1.09004 * 109.46921 * 293.67891 * 5 4 3 33 33 H 1.09001 * 109.47187 * 299.99557 * 6 4 3 34 34 H 1.08994 * 109.47184 * 60.00141 * 6 4 3 35 35 H 1.09002 * 109.46409 * 180.02562 * 6 4 3 36 36 H 1.09000 * 117.50323 * 359.97438 * 7 3 2 37 37 H 1.09007 * 117.51324 * 214.96997 * 7 3 2 38 38 H 1.00899 * 110.99724 * 99.65563 * 10 8 7 39 39 H 1.08998 * 109.47116 * 60.00375 * 11 10 8 40 40 H 1.08995 * 109.47236 * 299.99754 * 11 10 8 41 41 H 1.09003 * 109.47206 * 179.97438 * 13 12 11 42 42 H 1.09001 * 109.47220 * 299.99689 * 13 12 11 43 43 H 1.09004 * 109.47517 * 59.99839 * 13 12 11 44 44 H 1.08997 * 109.46853 * 299.99832 * 14 12 11 45 45 H 1.09001 * 109.47157 * 60.00361 * 14 12 11 46 46 H 1.09003 * 109.46747 * 180.02562 * 14 12 11 47 47 H 1.09005 * 109.46857 * 59.99772 * 15 12 11 48 48 H 1.08997 * 109.46695 * 300.00370 * 15 12 11 49 49 H 0.97000 * 120.00572 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.3725 1.6717 -0.7160 5 6 3.4138 0.8355 -1.9966 6 6 3.5131 3.1536 -1.0698 7 6 0.9977 2.5603 -0.0724 8 6 1.7459 2.2958 1.2355 9 1 2.5017 3.0205 1.5385 10 7 0.9957 1.6672 2.3310 11 6 1.2859 2.3242 3.6125 12 6 0.4876 1.6439 4.7265 13 6 0.8828 0.1681 4.8090 14 6 -1.0079 1.7552 4.4234 15 6 0.7902 2.3276 6.0614 16 6 0.0045 1.6572 7.1587 17 1 -0.6460 0.8268 6.9271 18 6 0.1153 2.1047 8.4582 19 7 0.9070 3.1162 8.7401 20 14 -0.8528 1.2687 9.8196 21 1 -2.1709 1.9357 9.9710 22 1 -1.0583 -0.1610 9.4748 23 1 -0.0988 1.3668 11.0952 24 1 -0.3634 0.5910 0.8407 25 1 -0.3634 0.4326 -0.9322 26 1 -0.3633 -1.0236 0.0914 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.1922 1.3750 -0.0617 30 1 2.5324 1.0517 -2.6003 31 1 4.3117 1.0824 -2.5630 32 1 3.4266 -0.2236 -1.7388 33 1 2.6934 3.4504 -1.7241 34 1 3.4838 3.7493 -0.1575 35 1 4.4623 3.3167 -1.5802 36 1 -0.0513 2.2680 -0.1205 37 1 1.2611 3.4591 -0.6301 38 1 1.1882 0.6780 2.3801 39 1 1.0039 3.3754 3.5540 40 1 2.3513 2.2452 3.8283 41 1 0.3144 -0.3164 5.6029 42 1 0.6675 -0.3193 3.8581 43 1 1.9482 0.0887 5.0250 44 1 -1.2894 2.8066 4.3647 45 1 -1.2232 1.2678 3.4725 46 1 -1.5766 1.2710 5.2173 47 1 0.5091 3.3792 6.0029 48 1 1.8557 2.2479 6.2771 49 1 0.9847 3.4313 9.6542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453614603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:09 Heat of formation + Delta-G solvation = -19.687235 kcal Electronic energy + Delta-G solvation = -21650.260914 eV Core-core repulsion = 18804.369721 eV Total energy + Delta-G solvation = -2845.891193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75873 -38.76094 -35.38830 -34.35658 -33.11427 -31.68250 -28.90280 -27.95652 -27.90238 -26.68306 -25.55284 -24.39905 -22.57722 -21.79558 -19.69403 -18.78539 -18.33639 -17.20920 -16.88814 -16.49892 -15.65138 -15.42127 -15.14048 -14.90038 -14.63329 -14.38414 -14.13760 -13.87491 -13.75554 -13.39274 -13.28676 -13.13572 -12.82038 -12.72319 -12.58229 -12.54801 -12.27242 -12.19940 -12.18492 -12.08994 -11.98842 -11.89936 -11.64764 -11.40823 -11.30219 -10.96255 -10.89839 -10.75623 -10.50651 -10.29853 -9.06665 -8.13949 -6.21135 1.40991 1.41554 1.52161 2.43757 2.91128 3.15070 3.19926 3.85214 3.91866 3.97175 4.13790 4.17518 4.24169 4.33771 4.41000 4.51201 4.56826 4.57918 4.68895 4.78282 4.79326 4.83980 4.88163 4.95133 4.97517 5.05215 5.07641 5.10447 5.14296 5.16864 5.20825 5.23336 5.30480 5.34805 5.44576 5.50696 5.51444 5.53282 5.56069 5.58056 5.65425 5.67336 5.87183 5.92526 6.19421 6.37746 6.54076 6.93980 7.46231 8.98511 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035156 B = 0.003732 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.262881 B = 7499.973907 C = 7827.112711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.060 4.060 5 C -0.140 4.140 6 C -0.149 4.149 7 C -0.164 4.164 8 C 0.007 3.993 9 H 0.085 0.915 10 N -0.645 5.645 11 C 0.085 3.915 12 C -0.054 4.054 13 C -0.121 4.121 14 C -0.105 4.105 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.262 1.262 23 H -0.287 1.287 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.343 0.657 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.029 0.971 45 H 0.067 0.933 46 H 0.039 0.961 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 -5.382 -22.170 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.079 4.079 5 C -0.197 4.197 6 C -0.206 4.206 7 C -0.201 4.201 8 C -0.104 4.104 9 H 0.103 0.897 10 N -0.277 5.277 11 C -0.044 4.044 12 C -0.055 4.055 13 C -0.179 4.179 14 C -0.163 4.163 15 C 0.003 3.997 16 C -0.552 4.552 17 H 0.085 0.915 18 C -0.201 4.201 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.201 1.201 22 H -0.186 1.186 23 H -0.213 1.213 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.166 0.834 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.001 0.999 48 H 0.001 0.999 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.359 -4.940 -22.130 22.797 hybrid contribution 0.678 -0.050 1.592 1.731 sum 3.037 -4.989 -20.538 21.352 Atomic orbital electron populations 1.21962 0.95402 1.01693 1.02468 1.21042 0.96161 0.93252 1.02141 1.22016 0.96760 0.93249 0.99742 1.20598 0.94372 0.96190 0.96708 1.21820 1.01992 0.99609 0.96281 1.21959 1.02135 0.95297 1.01201 1.23585 0.98027 0.99558 0.98965 1.22547 0.99043 1.01787 0.87009 0.89720 1.60322 1.57805 1.07356 1.02234 1.21837 0.96084 0.97839 0.88669 1.20487 0.95961 0.95557 0.93449 1.21677 0.99912 0.95368 1.00916 1.21489 0.94555 0.99944 1.00278 1.18997 0.94388 0.94042 0.92266 1.21619 1.25110 1.15826 0.92646 0.91533 1.25931 0.96716 0.95873 1.01617 1.70111 1.39976 1.27917 1.19993 0.85567 0.78501 0.79379 0.78349 1.20122 1.18591 1.21252 0.91503 0.92602 0.92797 0.89825 0.92729 0.91934 0.92363 0.92102 0.92101 0.91736 0.93610 0.91954 0.88236 0.88032 0.83447 0.92753 0.96708 0.93304 0.91617 0.94563 0.95200 0.91395 0.94204 0.99876 0.99886 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 8.33 71.98 0.60 -2.36 16 2 C -0.09 -1.61 5.24 30.60 0.16 -1.45 16 3 C -0.12 -2.25 2.39 -52.18 -0.12 -2.38 16 4 C -0.06 -1.01 3.15 -10.79 -0.03 -1.04 16 5 C -0.14 -1.89 8.24 71.98 0.59 -1.29 16 6 C -0.15 -2.36 7.87 71.98 0.57 -1.79 16 7 C -0.16 -3.41 8.59 30.59 0.26 -3.15 16 8 C 0.01 0.16 5.56 44.91 0.25 0.41 16 9 H 0.09 2.25 6.99 -2.38 -0.02 2.23 16 10 N -0.64 -18.16 4.26 -491.57 -2.10 -20.26 16 11 C 0.09 3.01 4.50 86.30 0.39 3.40 16 12 C -0.05 -2.19 0.60 -52.18 -0.03 -2.22 16 13 C -0.12 -4.45 7.89 71.98 0.57 -3.89 16 14 C -0.11 -4.06 8.07 71.98 0.58 -3.48 16 15 C 0.04 2.14 4.04 29.85 0.12 2.26 16 16 C -0.51 -28.74 7.65 25.60 0.20 -28.54 16 17 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 18 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 19 N -0.94 -57.99 13.29 21.45 0.28 -57.71 16 20 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H 0.07 1.50 5.41 -2.39 -0.01 1.49 16 25 H 0.05 0.97 7.59 -2.38 -0.02 0.96 16 26 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.08 1.29 5.58 -2.39 -0.01 1.27 16 28 H 0.05 1.06 7.30 -2.39 -0.02 1.04 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.78 6.64 -2.39 -0.02 0.76 16 33 H 0.06 0.96 6.71 -2.39 -0.02 0.94 16 34 H 0.04 0.82 6.93 -2.39 -0.02 0.80 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 2.18 5.83 -2.39 -0.01 2.16 16 37 H 0.10 1.92 5.89 -2.38 -0.01 1.90 16 38 H 0.34 9.20 4.79 -89.69 -0.43 8.77 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 42 H 0.07 1.96 6.57 -2.39 -0.02 1.95 16 43 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 2.25 7.60 -2.39 -0.02 2.24 16 46 H 0.04 1.63 6.62 -2.39 -0.02 1.61 16 47 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 48 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 49 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -61.74 356.60 5.24 -56.50 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.47 Total: 19.99 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 4.56 Total: -45.32 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -1.81 Total: -77.97 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -61.74 5.24 -56.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453614603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.812 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds