Wall clock time and date at job start Mon Mar 30 2020 00:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00084 * 2 1 4 4 O 1.21283 * 120.00062 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00216 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47172 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46762 * 179.97438 * 6 5 3 8 8 C 1.53007 * 109.47003 * 179.97438 * 7 6 5 9 9 C 1.50692 * 109.47222 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00266 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99997 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00203 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00029 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47285 * 89.99424 * 13 11 9 15 15 H 1.48503 * 109.47086 * 209.99784 * 13 11 9 16 16 H 1.48505 * 109.46819 * 329.99488 * 13 11 9 17 17 C 1.46496 * 119.99759 * 180.02562 * 2 1 3 18 18 C 1.53004 * 109.47487 * 59.99455 * 17 2 1 19 19 C 1.53001 * 109.47239 * 179.97438 * 18 17 2 20 20 C 1.52997 * 109.46736 * 60.00467 * 19 18 17 21 21 C 1.53006 * 109.47368 * 299.99585 * 20 19 18 22 22 C 1.53001 * 109.46527 * 60.00290 * 21 20 19 23 23 H 1.09001 * 109.47060 * 270.00360 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.99849 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.99932 * 1 2 3 26 26 H 1.09000 * 109.47357 * 300.00116 * 5 3 2 27 27 H 1.08998 * 109.46869 * 60.00030 * 5 3 2 28 28 H 1.09000 * 109.47535 * 299.99991 * 6 5 3 29 29 H 1.08998 * 109.47172 * 60.00248 * 6 5 3 30 30 H 1.08995 * 109.47557 * 299.99708 * 7 6 5 31 31 H 1.09007 * 109.47215 * 60.00822 * 7 6 5 32 32 H 1.09000 * 109.46984 * 300.00591 * 8 7 6 33 33 H 1.08999 * 109.46611 * 60.00077 * 8 7 6 34 34 H 0.96993 * 120.00153 * 179.97438 * 12 11 9 35 35 H 1.09003 * 109.47380 * 180.02562 * 17 2 1 36 36 H 1.08993 * 109.47015 * 300.00345 * 18 17 2 37 37 H 1.09000 * 109.46385 * 60.00312 * 18 17 2 38 38 H 1.08995 * 109.47114 * 300.00810 * 19 18 17 39 39 H 1.08993 * 109.47156 * 180.02562 * 19 18 17 40 40 H 1.09007 * 109.47077 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47454 * 59.99930 * 20 19 18 42 42 H 1.08993 * 109.46907 * 300.00168 * 21 20 19 43 43 H 1.09000 * 109.46878 * 179.97438 * 21 20 19 44 44 H 1.09001 * 109.46671 * 179.97438 * 22 21 20 45 45 H 1.08993 * 109.47626 * 60.00318 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3798 3.6352 0.0011 7 6 1.6148 4.9602 0.0011 8 6 2.6090 6.1231 0.0022 9 6 1.8556 7.4282 0.0028 10 1 0.7756 7.4283 0.0028 11 6 2.5450 8.6222 0.0044 12 7 1.8875 9.7613 0.0054 13 14 4.4130 8.6222 0.0051 14 1 4.9086 8.6236 -1.3947 15 1 4.9078 9.8340 0.7067 16 1 4.9077 7.4089 0.7041 17 6 2.1975 -1.2687 -0.0006 18 6 1.8278 -2.0706 -1.2501 19 6 2.5932 -3.3954 -1.2510 20 6 2.2241 -4.1983 -0.0020 21 6 2.5938 -3.3966 1.2476 22 6 1.8284 -2.0718 1.2483 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 0.7585 2.5303 -0.8891 27 1 0.7592 2.5298 0.8908 28 1 3.0065 3.5771 0.8910 29 1 3.0064 3.5778 -0.8889 30 1 0.9884 5.0181 -0.8891 31 1 0.9879 5.0178 0.8910 32 1 3.2351 6.0650 0.8926 33 1 3.2363 6.0657 -0.8874 34 1 2.3725 10.6012 0.0069 35 1 3.2692 -1.0696 0.0000 36 1 0.7562 -2.2697 -1.2501 37 1 2.0912 -1.4986 -2.1398 38 1 3.6648 -3.1958 -1.2510 39 1 2.3302 -3.9664 -2.1413 40 1 2.7691 -5.1424 -0.0028 41 1 1.1525 -4.3979 -0.0019 42 1 3.6654 -3.1971 1.2474 43 1 2.3304 -3.9685 2.1373 44 1 2.0914 -1.5008 2.1388 45 1 0.7568 -2.2712 1.2485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588248574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:18 Heat of formation + Delta-G solvation = -78.633175 kcal Electronic energy + Delta-G solvation = -20413.199813 eV Core-core repulsion = 17428.919438 eV Total energy + Delta-G solvation = -2984.280375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36579 -38.31395 -35.22593 -34.98561 -32.57647 -31.12121 -30.77074 -29.46996 -27.04092 -25.88276 -23.03706 -22.96190 -21.55064 -20.01556 -19.94632 -19.03548 -17.00127 -16.54079 -16.48651 -15.94820 -15.20560 -14.65190 -14.42607 -14.38540 -14.17602 -13.66484 -13.28966 -13.14887 -12.77042 -12.68905 -12.53987 -12.50702 -12.27353 -11.97218 -11.70438 -11.49405 -11.46784 -11.08824 -10.99743 -10.70381 -10.64096 -10.58991 -10.50156 -9.88532 -9.75669 -9.62042 -9.36465 -9.09590 -8.76188 -8.47505 -5.98809 -3.96108 2.68147 2.86741 3.36931 3.43780 3.50233 4.29519 4.41890 4.51903 4.54558 4.62885 4.83795 4.87551 4.90425 5.07207 5.12649 5.14832 5.21553 5.26394 5.28253 5.35523 5.38669 5.40171 5.47073 5.67618 5.69837 5.75388 5.76093 5.82758 5.87366 5.99358 6.06493 6.07666 6.18091 6.39425 6.48809 6.71506 6.85095 7.01858 7.29625 7.40806 7.53579 7.86850 8.21046 8.60327 9.06246 9.64701 11.14721 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044112 B = 0.002908 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.602198 B = 9627.294709 C = 9894.596767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.620 5.620 3 C 0.513 3.487 4 O -0.538 6.538 5 C -0.137 4.137 6 C -0.106 4.106 7 C -0.102 4.102 8 C -0.016 4.016 9 C -0.519 4.519 10 H 0.071 0.929 11 C 0.064 3.936 12 N -0.906 5.906 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.264 1.264 17 C 0.138 3.862 18 C -0.127 4.127 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.126 4.126 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.015 0.985 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 -29.735 -0.078 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.354 5.354 3 C 0.303 3.697 4 O -0.414 6.414 5 C -0.177 4.177 6 C -0.144 4.144 7 C -0.140 4.140 8 C -0.053 4.053 9 C -0.557 4.557 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.546 5.546 13 Si 0.707 3.293 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.189 1.189 17 C 0.034 3.966 18 C -0.166 4.166 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.164 4.164 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.594 -29.519 -0.075 29.633 hybrid contribution 0.740 0.143 -0.010 0.753 sum -1.854 -29.376 -0.084 29.434 Atomic orbital electron populations 1.21785 0.79761 1.03299 1.01896 1.48004 1.06912 1.05806 1.74639 1.21110 0.88218 0.85538 0.74847 1.90677 1.14244 1.87309 1.49205 1.21801 0.99994 0.91931 1.03946 1.21491 0.97168 0.92942 1.02843 1.21474 0.98635 0.92980 1.00879 1.19577 0.95326 0.94085 0.96306 1.21187 0.95025 0.89025 1.50427 0.91116 1.25045 0.98408 0.95554 0.94633 1.69921 1.35720 0.97390 1.51554 0.86772 0.86346 0.77641 0.78535 1.20321 1.21472 1.18888 1.21068 0.98451 0.82616 0.94417 1.21880 1.00566 0.96165 0.97952 1.21497 1.00552 0.95514 0.97961 1.21562 1.01334 0.98310 0.94580 1.21504 1.00545 0.95551 0.97950 1.21865 1.00565 0.96086 0.97929 0.92605 0.90558 0.91151 0.89058 0.89077 0.91844 0.91859 0.92902 0.92872 0.96629 0.97067 0.92835 0.88209 0.91664 0.91586 0.91681 0.91705 0.91920 0.91992 0.91688 0.91712 0.91631 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 9.30 59.85 0.56 1.11 16 2 N -0.62 -6.65 2.76 -173.92 -0.48 -7.13 16 3 C 0.51 7.30 7.67 -10.99 -0.08 7.21 16 4 O -0.54 -9.79 15.31 5.55 0.09 -9.70 16 5 C -0.14 -1.82 4.25 -27.88 -0.12 -1.94 16 6 C -0.11 -1.85 4.50 -26.73 -0.12 -1.97 16 7 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 8 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 9 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 10 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 11 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 12 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 13 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 17 C 0.14 1.36 2.52 -67.93 -0.17 1.19 16 18 C -0.13 -1.02 5.18 -26.73 -0.14 -1.16 16 19 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 20 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 21 C -0.12 -0.81 5.92 -26.73 -0.16 -0.96 16 22 C -0.13 -1.02 5.21 -26.73 -0.14 -1.16 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.52 6.44 -51.93 -0.33 0.18 16 25 H 0.07 0.41 6.43 -51.93 -0.33 0.07 16 26 H 0.09 1.05 7.40 -51.93 -0.38 0.67 16 27 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 28 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 29 H 0.06 1.16 8.10 -51.93 -0.42 0.73 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 33 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.10 1.25 6.90 -51.93 -0.36 0.89 16 36 H 0.06 0.45 6.66 -51.93 -0.35 0.11 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -33.71 347.43 -8.85 -42.56 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -8.42 Total: -5.10 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.37 Total: -15.93 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.29 Total: -34.96 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.71 -8.85 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588248574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.077 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds