Wall clock time and date at job start Mon Mar 30 2020 00:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00084 * 2 1 4 4 O 1.21283 * 120.00062 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00216 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47172 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46762 * 179.97438 * 6 5 3 8 8 C 1.53007 * 109.47003 * 179.97438 * 7 6 5 9 9 C 1.50692 * 109.47222 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00266 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99997 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00203 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00029 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47285 * 89.99424 * 13 11 9 15 15 H 1.48503 * 109.47086 * 209.99784 * 13 11 9 16 16 H 1.48505 * 109.46819 * 329.99488 * 13 11 9 17 17 C 1.46496 * 119.99759 * 180.02562 * 2 1 3 18 18 C 1.53004 * 109.47487 * 59.99455 * 17 2 1 19 19 C 1.53001 * 109.47239 * 179.97438 * 18 17 2 20 20 C 1.52997 * 109.46736 * 60.00467 * 19 18 17 21 21 C 1.53006 * 109.47368 * 299.99585 * 20 19 18 22 22 C 1.53001 * 109.46527 * 60.00290 * 21 20 19 23 23 H 1.09001 * 109.47060 * 270.00360 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.99849 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.99932 * 1 2 3 26 26 H 1.09000 * 109.47357 * 300.00116 * 5 3 2 27 27 H 1.08998 * 109.46869 * 60.00030 * 5 3 2 28 28 H 1.09000 * 109.47535 * 299.99991 * 6 5 3 29 29 H 1.08998 * 109.47172 * 60.00248 * 6 5 3 30 30 H 1.08995 * 109.47557 * 299.99708 * 7 6 5 31 31 H 1.09007 * 109.47215 * 60.00822 * 7 6 5 32 32 H 1.09000 * 109.46984 * 300.00591 * 8 7 6 33 33 H 1.08999 * 109.46611 * 60.00077 * 8 7 6 34 34 H 0.96993 * 120.00153 * 179.97438 * 12 11 9 35 35 H 1.09003 * 109.47380 * 180.02562 * 17 2 1 36 36 H 1.08993 * 109.47015 * 300.00345 * 18 17 2 37 37 H 1.09000 * 109.46385 * 60.00312 * 18 17 2 38 38 H 1.08995 * 109.47114 * 300.00810 * 19 18 17 39 39 H 1.08993 * 109.47156 * 180.02562 * 19 18 17 40 40 H 1.09007 * 109.47077 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47454 * 59.99930 * 20 19 18 42 42 H 1.08993 * 109.46907 * 300.00168 * 21 20 19 43 43 H 1.09000 * 109.46878 * 179.97438 * 21 20 19 44 44 H 1.09001 * 109.46671 * 179.97438 * 22 21 20 45 45 H 1.08993 * 109.47626 * 60.00318 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3798 3.6352 0.0011 7 6 1.6148 4.9602 0.0011 8 6 2.6090 6.1231 0.0022 9 6 1.8556 7.4282 0.0028 10 1 0.7756 7.4283 0.0028 11 6 2.5450 8.6222 0.0044 12 7 1.8875 9.7613 0.0054 13 14 4.4130 8.6222 0.0051 14 1 4.9086 8.6236 -1.3947 15 1 4.9078 9.8340 0.7067 16 1 4.9077 7.4089 0.7041 17 6 2.1975 -1.2687 -0.0006 18 6 1.8278 -2.0706 -1.2501 19 6 2.5932 -3.3954 -1.2510 20 6 2.2241 -4.1983 -0.0020 21 6 2.5938 -3.3966 1.2476 22 6 1.8284 -2.0718 1.2483 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 0.7585 2.5303 -0.8891 27 1 0.7592 2.5298 0.8908 28 1 3.0065 3.5771 0.8910 29 1 3.0064 3.5778 -0.8889 30 1 0.9884 5.0181 -0.8891 31 1 0.9879 5.0178 0.8910 32 1 3.2351 6.0650 0.8926 33 1 3.2363 6.0657 -0.8874 34 1 2.3725 10.6012 0.0069 35 1 3.2692 -1.0696 0.0000 36 1 0.7562 -2.2697 -1.2501 37 1 2.0912 -1.4986 -2.1398 38 1 3.6648 -3.1958 -1.2510 39 1 2.3302 -3.9664 -2.1413 40 1 2.7691 -5.1424 -0.0028 41 1 1.1525 -4.3979 -0.0019 42 1 3.6654 -3.1971 1.2474 43 1 2.3304 -3.9685 2.1373 44 1 2.0914 -1.5008 2.1388 45 1 0.7568 -2.2712 1.2485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588248574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:18 Heat of formation + Delta-G solvation = -98.085370 kcal Electronic energy + Delta-G solvation = -20414.043323 eV Core-core repulsion = 17428.919438 eV Total energy + Delta-G solvation = -2985.123886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29262 -39.13798 -36.68533 -36.03336 -34.61091 -32.15497 -31.71356 -30.58432 -27.88610 -27.40903 -24.32494 -23.55906 -22.76244 -21.72138 -20.61512 -19.98775 -18.87030 -17.87772 -17.35024 -17.04811 -16.34274 -15.91245 -15.84012 -15.10256 -15.04574 -14.80576 -14.52976 -14.37449 -13.96115 -13.69802 -13.61608 -13.50749 -13.30973 -13.12825 -13.07510 -12.85335 -12.32508 -12.11791 -12.08882 -12.06713 -11.76239 -11.55624 -11.49184 -11.35491 -11.29837 -11.26370 -11.19760 -10.76523 -10.67066 -9.60748 -8.30202 -6.33130 1.34136 1.35565 1.48587 1.61934 2.01254 2.35423 3.05109 3.55568 3.78700 3.80694 3.96396 4.02236 4.11236 4.18857 4.27230 4.30494 4.47446 4.51162 4.55303 4.59182 4.61414 4.67033 4.73485 4.75124 4.81976 4.86983 4.98009 5.09538 5.12008 5.13602 5.17424 5.19341 5.20226 5.26378 5.31988 5.38670 5.50292 5.58409 5.64556 5.65244 5.68261 6.28991 6.38377 6.74626 7.18769 7.31670 8.86373 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044112 B = 0.002908 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.602198 B = 9627.294709 C = 9894.596767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.612 5.612 3 C 0.507 3.493 4 O -0.591 6.591 5 C -0.128 4.128 6 C -0.097 4.097 7 C -0.092 4.092 8 C -0.017 4.017 9 C -0.530 4.530 10 H 0.038 0.962 11 C 0.004 3.996 12 N -0.950 5.950 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.254 1.254 17 C 0.133 3.867 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.119 4.119 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.013 0.987 33 H 0.012 0.988 34 H 0.266 0.734 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -32.107 -0.148 32.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.344 5.344 3 C 0.297 3.703 4 O -0.471 6.471 5 C -0.168 4.168 6 C -0.135 4.135 7 C -0.130 4.130 8 C -0.054 4.054 9 C -0.568 4.568 10 H 0.056 0.944 11 C -0.193 4.193 12 N -0.591 5.591 13 Si 0.771 3.229 14 H -0.192 1.192 15 H -0.206 1.206 16 H -0.177 1.177 17 C 0.030 3.970 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.157 4.157 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.326 -31.933 -0.146 32.106 hybrid contribution 0.853 0.870 0.014 1.219 sum -2.473 -31.063 -0.131 31.161 Atomic orbital electron populations 1.22095 0.77214 1.04920 1.03315 1.48082 1.08489 1.05082 1.72738 1.21258 0.87647 0.86755 0.74626 1.90659 1.16375 1.88069 1.52026 1.21702 0.99070 0.89810 1.06178 1.21285 0.97492 0.93182 1.01572 1.21331 0.97741 0.92537 1.01382 1.19576 0.96005 0.93835 0.96031 1.21533 0.94008 0.91279 1.49956 0.94373 1.25984 1.03857 0.95116 0.94298 1.70055 1.37946 0.98219 1.52878 0.85703 0.79837 0.78214 0.79186 1.19202 1.20650 1.17743 1.21143 0.96618 0.82722 0.96490 1.21829 1.01832 0.96136 0.96064 1.21510 0.99645 0.95184 0.99169 1.21543 1.02233 0.98223 0.93309 1.21516 0.99634 0.95205 0.99178 1.21809 1.01775 0.96088 0.96069 0.91214 0.89603 0.89013 0.86664 0.86859 0.93257 0.93137 0.92338 0.92417 0.96896 0.96965 0.92494 0.91728 0.89690 0.93100 0.93006 0.90374 0.90982 0.90700 0.93003 0.90435 0.93236 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 9.30 127.77 1.19 1.94 16 2 N -0.61 -12.22 2.76 -822.57 -2.27 -14.50 16 3 C 0.51 14.10 7.67 87.66 0.67 14.77 16 4 O -0.59 -22.08 15.31 -3.04 -0.05 -22.12 16 5 C -0.13 -3.17 4.25 29.85 0.13 -3.04 16 6 C -0.10 -3.30 4.50 30.59 0.14 -3.16 16 7 C -0.09 -3.62 5.15 30.60 0.16 -3.47 16 8 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 9 C -0.53 -31.54 9.66 25.60 0.25 -31.29 16 10 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 11 C 0.00 0.25 5.47 84.65 0.46 0.71 16 12 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 13 Si 0.95 46.50 27.47 68.60 1.88 48.39 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 15 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 16 H -0.25 -11.91 6.54 99.48 0.65 -11.26 16 17 C 0.13 2.54 2.52 44.99 0.11 2.65 16 18 C -0.12 -1.73 5.18 30.60 0.16 -1.57 16 19 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 20 C -0.12 -1.12 5.92 30.60 0.18 -0.94 16 21 C -0.12 -1.43 5.92 30.60 0.18 -1.25 16 22 C -0.12 -1.74 5.21 30.60 0.16 -1.58 16 23 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.09 0.85 6.44 -2.38 -0.02 0.83 16 25 H 0.09 0.68 6.43 -2.39 -0.02 0.67 16 26 H 0.12 2.31 7.40 -2.39 -0.02 2.30 16 27 H 0.11 2.32 8.11 -2.39 -0.02 2.30 16 28 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 29 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 33 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 34 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.06 1.70 6.90 -2.39 -0.02 1.69 16 36 H 0.08 0.89 6.66 -2.39 -0.02 0.87 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.92 7.67 -2.39 -0.02 0.90 16 Total: -1.00 -74.93 347.43 4.82 -70.11 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 0.86 Total: 6.89 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 4.09 Total: -28.18 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -1.97 Total: -75.08 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.88 Total: 48.39 kcal Total: -74.93 4.82 -70.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588248574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.975 kcal (2) G-P(sol) polarization free energy of solvation -74.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds