Wall clock time and date at job start Mon Mar 30 2020 01:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99668 * 2 1 4 4 C 1.53003 * 109.46856 * 178.92767 * 3 2 1 5 5 N 1.46898 * 109.47145 * 94.85384 * 4 3 2 6 6 C 1.46896 * 111.00318 * 156.60699 * 5 4 3 7 7 C 1.52998 * 109.47438 * 197.48845 * 6 5 4 8 8 C 1.50704 * 115.55200 * 268.44005 * 7 6 5 9 9 H 1.07997 * 120.00057 * 144.27770 * 8 7 6 10 10 C 1.37879 * 119.99765 * 324.27842 * 8 7 6 11 11 N 1.31518 * 119.99636 * 340.37872 * 10 8 7 12 12 Si 1.86796 * 120.00117 * 160.38219 * 10 8 7 13 13 H 1.48502 * 109.47054 * 59.99443 * 12 10 8 14 14 H 1.48500 * 109.47047 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46910 * 300.00087 * 12 10 8 16 16 C 1.53000 * 117.49990 * 122.72737 * 7 6 5 17 17 C 1.53002 * 60.00122 * 252.51292 * 16 7 6 18 18 C 1.46902 * 111.00274 * 280.56426 * 5 4 3 19 19 C 1.54269 * 110.03324 * 75.11038 * 18 5 4 20 20 C 1.54887 * 104.19655 * 217.11056 * 19 18 5 21 21 C 1.54887 * 102.75034 * 37.94219 * 20 19 18 22 22 C 1.53874 * 110.02727 * 317.94868 * 18 5 4 23 23 H 1.08993 * 109.47101 * 305.10205 * 1 2 3 24 24 H 1.09003 * 109.46625 * 65.10216 * 1 2 3 25 25 H 1.09004 * 109.46852 * 185.09825 * 1 2 3 26 26 H 1.09001 * 109.47485 * 58.93570 * 3 2 1 27 27 H 1.08997 * 109.47337 * 298.92633 * 3 2 1 28 28 H 1.09002 * 109.47339 * 334.85273 * 4 3 2 29 29 H 1.08995 * 109.47083 * 214.85188 * 4 3 2 30 30 H 1.09004 * 109.47191 * 317.49026 * 6 5 4 31 31 H 1.09003 * 109.46983 * 77.48840 * 6 5 4 32 32 H 0.96997 * 119.99550 * 185.04232 * 11 10 8 33 33 H 1.08999 * 117.49943 * 0.02562 * 16 7 6 34 34 H 1.09004 * 117.49496 * 145.02323 * 16 7 6 35 35 H 1.09001 * 117.49801 * 252.50866 * 17 16 7 36 36 H 1.08997 * 117.51787 * 107.48386 * 17 16 7 37 37 H 1.08990 * 110.02042 * 196.55750 * 18 5 4 38 38 H 1.09005 * 110.48410 * 335.78935 * 19 18 5 39 39 H 1.08994 * 110.48452 * 98.43090 * 19 18 5 40 40 H 1.08998 * 110.75549 * 279.62782 * 20 19 18 41 41 H 1.08998 * 110.76063 * 156.26012 * 20 19 18 42 42 H 1.09006 * 110.48752 * 203.38015 * 21 20 19 43 43 H 1.08994 * 110.60050 * 80.79269 * 21 20 19 44 44 H 1.09008 * 110.03148 * 238.56374 * 22 18 5 45 45 H 1.08997 * 110.03497 * 359.97438 * 22 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5352 1.1848 0.0270 5 7 4.0562 1.2525 -1.3449 6 6 5.4578 1.6921 -1.3547 7 6 5.8334 2.1672 -2.7597 8 6 6.4204 1.1160 -3.6661 9 1 6.1953 1.1268 -4.7223 10 6 7.2450 0.1405 -3.1469 11 7 7.8299 0.3248 -1.9835 12 14 7.5312 -1.4428 -4.0959 13 1 8.1357 -1.1268 -5.4150 14 1 8.4505 -2.3207 -3.3281 15 1 6.2355 -2.1391 -4.2992 16 6 6.3555 3.5980 -2.9056 17 6 4.9526 3.2412 -3.4013 18 6 3.9044 -0.0381 -2.0300 19 6 2.4304 -0.2535 -2.4308 20 6 2.1956 -1.7692 -2.2149 21 6 3.0100 -2.0617 -0.9303 22 6 4.2729 -1.1878 -1.0759 23 1 -0.3633 0.5909 0.8407 24 1 -0.3633 0.4327 -0.9322 25 1 -0.3633 -1.0236 0.0913 26 1 1.6736 1.8531 0.8803 27 1 1.7039 1.8396 -0.8994 28 1 3.8165 0.2321 0.4758 29 1 3.9539 2.0012 0.6153 30 1 5.5865 2.5115 -0.6475 31 1 6.1014 0.8604 -1.0682 32 1 8.4664 -0.3277 -1.6519 33 1 6.4317 4.2006 -2.0006 34 1 7.1239 3.7791 -3.6573 35 1 4.7981 3.1878 -4.4790 36 1 4.1054 3.6091 -2.8226 37 1 4.5408 -0.0683 -2.9142 38 1 1.7711 0.3300 -1.7882 39 1 2.2770 0.0110 -3.4770 40 1 2.5822 -2.3437 -3.0566 41 1 1.1374 -1.9776 -2.0572 42 1 3.2797 -3.1167 -0.8815 43 1 2.4456 -1.7718 -0.0441 44 1 5.0877 -1.7764 -1.4977 45 1 4.5648 -0.7881 -0.1047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602761839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:11 Heat of formation + Delta-G solvation = -8.925201 kcal Electronic energy + Delta-G solvation = -22986.129965 eV Core-core repulsion = 20004.872354 eV Total energy + Delta-G solvation = -2981.257611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80823 -38.55019 -37.63927 -35.26736 -34.20980 -30.68848 -29.52911 -28.44623 -27.74005 -26.96213 -25.08521 -23.10584 -22.60870 -21.36790 -20.96109 -19.75366 -18.11789 -17.74916 -17.05090 -16.70715 -16.50416 -16.09299 -15.80047 -15.52750 -15.26261 -14.64327 -14.15840 -13.79790 -13.58786 -13.48193 -13.06628 -12.89713 -12.78498 -12.66489 -12.58183 -12.28321 -12.09737 -11.96651 -11.95488 -11.69213 -11.64918 -11.44053 -11.10062 -11.06134 -10.94404 -10.66650 -10.46619 -10.31840 -9.96080 -8.79309 -8.08025 -6.08074 1.34135 1.39064 1.44401 2.38923 2.93835 3.02259 3.34785 3.85122 4.01309 4.03677 4.18039 4.30915 4.36966 4.46880 4.53744 4.67295 4.68505 4.73122 4.75603 4.82447 4.87721 4.90685 4.95281 4.99542 5.06112 5.06868 5.10102 5.13127 5.17254 5.23774 5.27466 5.30205 5.35887 5.42966 5.60294 5.66741 5.67965 5.72230 5.85214 6.06201 6.42838 6.50164 6.61957 6.67213 6.90498 7.45583 8.90125 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.008464 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.629882 B = 3307.162929 C = 4120.223090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.389 6.389 3 C 0.074 3.926 4 C 0.032 3.968 5 N -0.521 5.521 6 C 0.092 3.908 7 C 0.039 3.961 8 C -0.500 4.500 9 H 0.043 0.957 10 C 0.048 3.952 11 N -0.888 5.888 12 Si 0.917 3.083 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.271 1.271 16 C -0.210 4.210 17 C -0.169 4.169 18 C 0.085 3.915 19 C -0.121 4.121 20 C -0.107 4.107 21 C -0.106 4.106 22 C -0.148 4.148 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.261 0.739 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.037 0.963 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.021 0.979 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.003 -1.624 5.662 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.309 6.309 3 C -0.002 4.002 4 C -0.096 4.096 5 N -0.244 5.244 6 C -0.035 4.035 7 C 0.038 3.962 8 C -0.537 4.537 9 H 0.061 0.939 10 C -0.153 4.153 11 N -0.526 5.526 12 Si 0.744 3.256 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.197 1.197 16 C -0.248 4.248 17 C -0.206 4.206 18 C -0.024 4.024 19 C -0.158 4.158 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.186 4.186 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.040 0.960 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.066 -1.550 5.570 15.208 hybrid contribution 1.311 -0.998 -0.352 1.685 sum -12.755 -2.548 5.219 14.015 Atomic orbital electron populations 1.22826 0.80723 1.03312 1.00387 1.88053 1.20336 1.27728 1.94748 1.22475 0.92328 0.84889 1.00557 1.22467 0.94775 1.01654 0.90699 1.62281 1.19289 1.27809 1.15050 1.21612 0.87700 0.99313 0.94864 1.18928 0.96895 0.86642 0.93734 1.20634 1.29050 1.10645 0.93409 0.93863 1.25297 0.94923 0.99638 0.95475 1.70000 1.25968 1.35870 1.20723 0.86242 0.78167 0.81822 0.79399 1.19994 1.20958 1.19677 1.22985 0.96641 1.03833 1.01390 1.22585 0.92598 1.06947 0.98498 1.22319 0.97346 0.86228 0.96488 1.22797 0.96089 0.96961 0.99985 1.22270 0.99956 0.95700 0.96507 1.22284 0.95122 0.97260 0.99637 1.22707 0.97927 0.98221 0.99793 0.93277 0.94023 0.88913 0.91761 0.92539 0.92654 0.90487 0.94755 0.91818 0.92982 0.90950 0.92000 0.91744 0.89446 0.91533 0.87238 0.94457 0.93977 0.90220 0.93233 0.88999 0.96040 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.71 113.37 1.21 1.62 16 2 O -0.39 -9.40 4.77 -148.98 -0.71 -10.11 16 3 C 0.07 1.88 5.19 71.98 0.37 2.26 16 4 C 0.03 1.02 5.16 86.30 0.44 1.47 16 5 N -0.52 -20.42 4.02 -866.76 -3.49 -23.90 16 6 C 0.09 4.28 4.70 86.30 0.41 4.68 16 7 C 0.04 1.92 1.66 -52.93 -0.09 1.83 16 8 C -0.50 -27.30 7.12 25.60 0.18 -27.12 16 9 H 0.04 2.42 7.89 -2.91 -0.02 2.40 16 10 C 0.05 2.60 4.79 84.65 0.41 3.00 16 11 N -0.89 -49.29 11.10 21.45 0.24 -49.05 16 12 Si 0.92 43.38 29.58 68.60 2.03 45.41 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 16 C -0.21 -9.76 9.88 30.59 0.30 -9.46 16 17 C -0.17 -7.44 9.71 30.60 0.30 -7.14 16 18 C 0.08 3.44 2.79 45.64 0.13 3.56 16 19 C -0.12 -4.07 5.84 31.67 0.18 -3.88 16 20 C -0.11 -3.17 6.51 31.88 0.21 -2.96 16 21 C -0.11 -3.27 6.25 31.67 0.20 -3.08 16 22 C -0.15 -5.73 5.36 31.32 0.17 -5.56 16 23 H 0.05 0.71 8.13 -2.39 -0.02 0.69 16 24 H 0.04 0.69 8.04 -2.39 -0.02 0.67 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.53 7.02 -2.39 -0.02 1.51 16 28 H 0.06 1.89 4.66 -2.39 -0.01 1.88 16 29 H 0.08 2.37 7.55 -2.39 -0.02 2.35 16 30 H 0.03 1.54 7.34 -2.39 -0.02 1.52 16 31 H 0.06 3.33 4.84 -2.39 -0.01 3.32 16 32 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 33 H 0.07 3.14 8.03 -2.39 -0.02 3.12 16 34 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 35 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.07 3.29 5.41 -2.39 -0.01 3.28 16 38 H 0.11 3.31 2.67 -2.38 -0.01 3.31 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.09 2.65 5.80 -2.39 -0.01 2.64 16 44 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.06 2.42 5.19 -2.39 -0.01 2.41 16 Total: -1.00 -57.39 328.76 3.45 -53.95 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.95 Total: 24.48 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 4.42 Total: -40.77 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -3.25 Total: -72.96 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.71 Total: -10.11 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -57.39 3.45 -53.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602761839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.022 kcal (2) G-P(sol) polarization free energy of solvation -57.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds