Wall clock time and date at job start Mon Mar 30 2020 00:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46892 * 110.99949 * 2 1 4 4 C 1.52998 * 109.47495 * 73.17407 * 3 2 1 5 5 C 1.52997 * 109.47454 * 184.34771 * 4 3 2 6 6 C 1.53174 * 109.54403 * 294.55241 * 5 4 3 7 7 C 1.53086 * 109.16584 * 183.15113 * 6 5 4 8 8 O 1.42901 * 109.41579 * 57.60939 * 7 6 5 9 9 C 1.42900 * 114.09551 * 298.84375 * 8 7 6 10 10 C 1.53090 * 109.41726 * 61.15738 * 9 8 7 11 11 C 1.46903 * 110.99738 * 236.04301 * 2 1 3 12 12 C 1.53002 * 109.47098 * 298.21455 * 11 2 1 13 13 C 1.50701 * 115.55114 * 301.19098 * 12 11 2 14 14 H 1.08004 * 119.99769 * 144.11427 * 13 12 11 15 15 C 1.37878 * 120.00011 * 324.11628 * 13 12 11 16 16 N 1.31516 * 119.99968 * 166.46728 * 15 13 12 17 17 Si 1.86801 * 120.00028 * 346.46796 * 15 13 12 18 18 H 1.48503 * 109.47034 * 95.88379 * 17 15 13 19 19 H 1.48493 * 109.47012 * 215.88048 * 17 15 13 20 20 H 1.48496 * 109.47206 * 335.88572 * 17 15 13 21 21 C 1.52999 * 117.49696 * 155.52480 * 12 11 2 22 22 C 1.52998 * 117.49664 * 86.86608 * 12 11 2 23 23 H 1.09007 * 109.46794 * 64.69706 * 1 2 3 24 24 H 1.08997 * 109.47320 * 184.69854 * 1 2 3 25 25 H 1.08995 * 109.47339 * 304.70368 * 1 2 3 26 26 H 1.09002 * 109.46830 * 193.17405 * 3 2 1 27 27 H 1.08999 * 109.47572 * 313.16390 * 3 2 1 28 28 H 1.09006 * 109.46647 * 304.34669 * 4 3 2 29 29 H 1.08998 * 109.47329 * 64.33968 * 4 3 2 30 30 H 1.08996 * 109.54377 * 54.81931 * 5 4 3 31 31 H 1.09002 * 109.52430 * 303.06208 * 6 5 4 32 32 H 1.09009 * 109.52329 * 63.24256 * 6 5 4 33 33 H 1.09001 * 109.48341 * 297.62550 * 7 6 5 34 34 H 1.09001 * 109.48193 * 177.59293 * 7 6 5 35 35 H 1.08998 * 109.48261 * 301.16724 * 9 8 7 36 36 H 1.09000 * 109.48687 * 181.14587 * 9 8 7 37 37 H 1.09000 * 109.51969 * 182.48532 * 10 9 8 38 38 H 1.08998 * 109.52346 * 62.29795 * 10 9 8 39 39 H 1.09000 * 109.46881 * 58.21509 * 11 2 1 40 40 H 1.08998 * 109.46743 * 178.21619 * 11 2 1 41 41 H 0.96997 * 120.00127 * 180.02562 * 16 15 13 42 42 H 1.09002 * 117.49899 * 359.97438 * 21 12 11 43 43 H 1.08994 * 117.49888 * 145.01868 * 21 12 11 44 44 H 1.08999 * 117.49413 * 214.97728 * 22 12 11 45 45 H 1.09002 * 117.50230 * 359.97121 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7884 1.9972 1.3807 5 6 2.2372 3.4596 1.3503 6 6 3.7483 3.5269 1.1091 7 6 4.2006 4.9886 1.1587 8 8 3.8439 5.5536 2.4219 9 6 2.4388 5.5610 2.6818 10 6 1.9158 4.1222 2.6934 11 6 1.9954 -0.7661 -1.1376 12 6 1.5415 -2.2229 -1.0252 13 6 1.9640 -2.9403 0.2309 14 1 1.3035 -3.6619 0.6888 15 6 3.1936 -2.6755 0.7956 16 7 3.4591 -3.0873 2.0161 17 14 4.4825 -1.7319 -0.1728 18 1 4.4218 -0.2938 0.1929 19 1 5.8306 -2.2669 0.1453 20 1 4.2195 -1.8845 -1.6263 21 6 1.4684 -3.0415 -2.3157 22 6 0.1811 -2.5870 -1.6232 23 1 -0.3633 0.4393 -0.9291 24 1 -0.3634 -1.0242 0.0842 25 1 -0.3634 0.5850 0.8448 26 1 3.0598 1.3519 -0.2342 27 1 1.4694 1.9626 -0.7495 28 1 0.7329 1.9465 1.6479 29 1 2.3766 1.4518 2.1187 30 1 1.7152 3.9846 0.5505 31 1 4.2663 2.9589 1.8818 32 1 3.9800 3.1069 0.1302 33 1 3.7129 5.5474 0.3599 34 1 5.2818 5.0392 1.0301 35 1 1.9280 6.1272 1.9031 36 1 2.2506 6.0239 3.6505 37 1 0.8367 4.1282 2.8477 38 1 2.3966 3.5663 3.4983 39 1 1.6202 -0.3393 -2.0677 40 1 3.0846 -0.7234 -1.1315 41 1 4.3240 -2.9007 2.4136 42 1 1.7432 -2.5422 -3.2448 43 1 1.7254 -4.0991 -2.2560 44 1 -0.4081 -3.3457 -1.1082 45 1 -0.3907 -1.7886 -2.0963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602787915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:39 Heat of formation + Delta-G solvation = -36.358818 kcal Electronic energy + Delta-G solvation = -21652.061465 eV Core-core repulsion = 18669.614243 eV Total energy + Delta-G solvation = -2982.447222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51383 -39.66700 -37.35642 -35.40444 -34.20876 -32.06012 -30.74290 -29.08441 -27.52107 -26.37557 -24.51004 -23.74698 -23.04124 -21.75820 -20.99034 -20.82492 -18.23244 -17.54132 -17.14247 -16.97755 -16.52493 -15.98461 -15.73684 -15.58368 -15.39328 -15.02636 -14.82093 -14.58994 -14.04533 -13.75620 -13.52381 -13.20435 -13.04842 -12.92087 -12.80324 -12.56916 -12.37189 -12.26070 -12.11304 -11.95788 -11.75966 -11.50658 -11.33479 -11.22574 -11.15948 -10.95982 -10.46171 -10.38576 -10.23759 -8.95794 -8.22488 -6.14672 1.31962 1.39243 1.46824 2.41663 2.84965 2.98165 3.15487 3.56384 3.70830 3.77743 3.93302 4.06891 4.07521 4.16560 4.20941 4.31421 4.36354 4.44195 4.48213 4.50387 4.58431 4.62481 4.66235 4.70860 4.76931 4.78768 4.86356 4.88999 4.92007 4.95467 5.06364 5.07370 5.15168 5.16478 5.25007 5.30949 5.33611 5.50260 5.51758 5.78532 6.27383 6.29068 6.37680 6.46261 6.81521 7.46679 8.94687 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.005383 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.175191 B = 5200.451073 C = 5673.878709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.545 5.545 3 C 0.054 3.946 4 C -0.099 4.099 5 C -0.081 4.081 6 C -0.156 4.156 7 C 0.063 3.937 8 O -0.407 6.407 9 C 0.059 3.941 10 C -0.149 4.149 11 C 0.088 3.912 12 C -0.011 4.011 13 C -0.466 4.466 14 H 0.025 0.975 15 C 0.042 3.958 16 N -0.943 5.943 17 Si 0.948 3.052 18 H -0.264 1.264 19 H -0.316 1.316 20 H -0.251 1.251 21 C -0.204 4.204 22 C -0.169 4.169 23 H 0.031 0.969 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.049 0.951 41 H 0.261 0.739 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.541 18.536 -5.193 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.268 5.268 3 C -0.073 4.073 4 C -0.137 4.137 5 C -0.100 4.100 6 C -0.193 4.193 7 C -0.013 4.013 8 O -0.326 6.326 9 C -0.017 4.017 10 C -0.186 4.186 11 C -0.038 4.038 12 C -0.012 4.012 13 C -0.503 4.503 14 H 0.044 0.956 15 C -0.156 4.156 16 N -0.583 5.583 17 Si 0.779 3.221 18 H -0.190 1.190 19 H -0.245 1.245 20 H -0.176 1.176 21 C -0.242 4.242 22 C -0.207 4.207 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.141 18.373 -4.485 19.172 hybrid contribution 0.383 -0.258 -0.746 0.878 sum -2.758 18.115 -5.232 19.056 Atomic orbital electron populations 1.22345 0.86611 1.02200 0.99942 1.61637 1.08930 1.12717 1.43565 1.22206 0.99272 0.88243 0.97622 1.21500 1.01511 0.94552 0.96146 1.21153 0.95415 0.95006 0.98406 1.22304 0.96610 0.98122 1.02298 1.22647 1.01252 0.91850 0.85591 1.87890 1.24778 1.81925 1.38050 1.22719 0.80890 0.95495 1.02573 1.22226 1.02428 0.96947 0.97037 1.21863 0.97873 0.93049 0.91061 1.19255 0.98128 0.91663 0.92173 1.20251 1.01158 1.21812 1.07117 0.95645 1.25491 1.00134 0.95561 0.94427 1.70082 1.23407 1.49872 1.14954 0.85983 0.76752 0.79295 0.80115 1.19034 1.24550 1.17640 1.23188 1.03241 1.00397 0.97362 1.22820 0.90435 1.03001 1.04396 0.95029 0.92094 0.91229 0.92735 0.93389 0.91110 0.94237 0.89496 0.93202 0.90794 0.91536 0.88338 0.91655 0.87761 0.89329 0.92719 0.94270 0.93351 0.93039 0.88959 0.90679 0.90934 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 8.62 127.69 1.10 2.34 16 2 N -0.54 -21.38 4.46 -922.46 -4.11 -25.50 16 3 C 0.05 1.74 4.64 86.30 0.40 2.14 16 4 C -0.10 -2.89 4.82 30.59 0.15 -2.75 16 5 C -0.08 -1.83 2.27 -10.68 -0.02 -1.85 16 6 C -0.16 -3.72 5.10 30.68 0.16 -3.56 16 7 C 0.06 1.26 6.84 72.01 0.49 1.76 16 8 O -0.41 -9.45 10.77 -148.98 -1.60 -11.05 16 9 C 0.06 1.07 6.84 72.01 0.49 1.56 16 10 C -0.15 -3.02 5.42 30.68 0.17 -2.86 16 11 C 0.09 3.64 3.66 86.30 0.32 3.95 16 12 C -0.01 -0.50 0.80 -52.93 -0.04 -0.54 16 13 C -0.47 -26.74 9.34 25.60 0.24 -26.50 16 14 H 0.03 1.64 8.06 -2.91 -0.02 1.61 16 15 C 0.04 2.46 5.41 84.65 0.46 2.92 16 16 N -0.94 -60.02 13.96 21.45 0.30 -59.72 16 17 Si 0.95 46.59 24.14 68.60 1.66 48.25 16 18 H -0.26 -12.32 6.24 99.48 0.62 -11.70 16 19 H -0.32 -15.85 7.11 99.48 0.71 -15.15 16 20 H -0.25 -11.42 6.57 99.48 0.65 -10.77 16 21 C -0.20 -8.17 9.95 30.62 0.30 -7.86 16 22 C -0.17 -6.53 7.98 30.62 0.24 -6.29 16 23 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.06 2.32 5.92 -2.39 -0.01 2.31 16 25 H 0.07 2.11 6.53 -2.39 -0.02 2.09 16 26 H 0.05 1.87 5.75 -2.39 -0.01 1.86 16 27 H 0.05 1.30 8.04 -2.39 -0.02 1.28 16 28 H 0.07 1.95 6.59 -2.38 -0.02 1.93 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.74 6.85 -2.38 -0.02 1.73 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.04 1.40 8.11 -2.39 -0.02 1.38 16 40 H 0.05 2.12 2.30 -2.39 -0.01 2.12 16 41 H 0.26 15.74 8.31 -92.71 -0.77 14.96 16 42 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 45 H 0.10 3.21 7.91 -2.39 -0.02 3.19 16 Total: -1.00 -67.58 335.18 1.49 -66.10 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.80 Total: 19.47 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 4.45 Total: -37.54 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -3.81 Total: -85.22 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.60 Total: -11.05 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.66 Total: 48.25 kcal Total: -67.58 1.49 -66.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602787915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.738 kcal (2) G-P(sol) polarization free energy of solvation -67.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds