Wall clock time and date at job start Mon Mar 30 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47476 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47578 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47528 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47528 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47578 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46898 * 55.00135 * 8 7 6 10 10 C 1.52995 * 109.47290 * 174.99638 * 8 7 6 11 11 N 1.46892 * 109.47076 * 295.00151 * 8 7 6 12 12 C 1.46909 * 111.00176 * 154.99909 * 11 8 7 13 13 C 1.52996 * 109.47133 * 174.73177 * 12 11 8 14 14 C 1.50691 * 115.55231 * 39.57251 * 13 12 11 15 15 H 1.08009 * 120.00422 * 265.28040 * 14 13 12 16 16 C 1.37879 * 119.99883 * 85.28746 * 14 13 12 17 17 N 1.31510 * 120.00103 * 353.43204 * 16 14 13 18 18 Si 1.86806 * 119.99790 * 173.43404 * 16 14 13 19 19 H 1.48499 * 109.46992 * 89.99878 * 18 16 14 20 20 H 1.48505 * 109.46960 * 209.99733 * 18 16 14 21 21 H 1.48496 * 109.47389 * 329.99537 * 18 16 14 22 22 C 1.53004 * 117.49456 * 253.86385 * 13 12 11 23 23 C 1.52999 * 60.00043 * 252.51031 * 22 13 12 24 24 H 1.09001 * 109.47124 * 299.99295 * 1 2 3 25 25 H 1.08994 * 109.47746 * 59.99597 * 1 2 3 26 26 H 1.09005 * 109.47400 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47124 * 240.00705 * 2 1 3 28 28 H 1.08994 * 109.47746 * 120.00403 * 2 1 3 29 29 H 1.08999 * 109.46998 * 60.00422 * 3 2 1 30 30 H 1.08997 * 109.47488 * 300.00513 * 3 2 1 31 31 H 1.09001 * 109.47111 * 60.00561 * 4 3 2 32 32 H 1.08997 * 109.47071 * 300.00634 * 4 3 2 33 33 H 1.08999 * 109.47249 * 60.00071 * 5 4 3 34 34 H 1.09005 * 109.46851 * 300.00098 * 5 4 3 35 35 H 1.09001 * 109.47439 * 60.00022 * 6 5 4 36 36 H 1.09005 * 109.46833 * 299.99739 * 6 5 4 37 37 H 1.08999 * 109.47249 * 59.99701 * 7 6 5 38 38 H 1.09005 * 109.46851 * 299.99728 * 7 6 5 39 39 H 1.09003 * 109.47033 * 180.02562 * 10 8 7 40 40 H 1.08998 * 109.47425 * 300.00124 * 10 8 7 41 41 H 1.09003 * 109.47253 * 60.00520 * 10 8 7 42 42 H 1.00895 * 111.00621 * 31.04407 * 11 8 7 43 43 H 1.09001 * 109.46625 * 294.73204 * 12 11 8 44 44 H 1.09001 * 109.47237 * 54.72737 * 12 11 8 45 45 H 0.97001 * 120.00306 * 185.07313 * 17 16 14 46 46 H 1.08994 * 117.50244 * 0.02562 * 22 13 12 47 47 H 1.09005 * 117.49813 * 145.02002 * 22 13 12 48 48 H 1.08995 * 117.50212 * 252.51122 * 23 22 13 49 49 H 1.09009 * 117.51268 * 107.47820 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6099 2.8850 -0.0013 7 6 6.1200 4.3275 -0.0013 8 6 7.6499 4.3275 -0.0019 9 1 8.0129 3.7382 -0.8440 10 6 8.1599 5.7645 -0.1277 11 7 8.1401 3.7420 1.2529 12 6 9.4875 3.1821 1.0817 13 6 10.0157 2.7013 2.4347 14 6 9.0053 2.0222 3.3228 15 1 8.4769 2.5915 4.0734 16 6 8.7555 0.6741 3.1774 17 7 9.3001 0.0079 2.1829 18 14 7.6433 -0.2061 4.3932 19 1 6.2396 -0.1471 3.9122 20 1 8.0662 -1.6245 4.5136 21 1 7.7401 0.4536 5.7200 22 6 11.0972 3.5460 3.1114 23 6 11.4585 2.1952 2.4904 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9329 0.9289 -0.8909 32 1 3.9336 0.9285 0.8890 33 1 3.7170 3.3983 0.8904 34 1 3.7162 3.3993 -0.8896 35 1 5.9726 2.3719 -0.8920 36 1 5.9740 2.3705 0.8881 37 1 5.7574 4.8411 0.8891 38 1 5.7559 4.8415 -0.8909 39 1 9.2499 5.7645 -0.1287 40 1 7.7961 6.1989 -1.0589 41 1 7.7969 6.3539 0.7143 42 1 7.5000 3.0439 1.6006 43 1 9.4463 2.3421 0.3883 44 1 10.1519 3.9492 0.6840 45 1 9.0670 -0.9223 2.0370 46 1 11.4321 4.4443 2.5929 47 1 11.0779 3.6107 4.1993 48 1 11.6769 1.3712 3.1696 49 1 12.0312 2.2043 1.5629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797604087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:54 Heat of formation + Delta-G solvation = -27.045936 kcal Electronic energy + Delta-G solvation = -20994.508170 eV Core-core repulsion = 18148.297879 eV Total energy + Delta-G solvation = -2846.210290 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -37.70603 -36.59992 -35.67189 -33.38402 -31.87623 -30.58400 -29.15562 -26.16901 -25.48533 -24.11680 -22.55485 -21.01933 -20.94784 -20.69937 -19.63267 -18.91286 -16.10026 -15.85722 -15.17490 -14.88530 -14.56616 -14.21337 -14.13633 -13.60432 -13.58325 -13.07256 -12.94251 -12.58015 -12.48762 -11.90654 -11.84957 -11.69274 -11.56151 -11.36121 -11.17844 -11.02992 -10.95399 -10.90336 -10.82394 -10.74959 -10.52761 -10.41275 -10.39043 -10.19502 -10.03260 -9.81974 -9.31104 -8.73391 -8.38301 -8.00058 -7.26106 -5.98098 -4.02181 3.29376 3.37661 3.42044 4.42997 4.64799 4.85328 5.00386 5.02765 5.15543 5.17089 5.29411 5.31610 5.41831 5.52433 5.54184 5.57594 5.69597 5.72209 5.83475 5.84645 5.91465 5.97123 6.01011 6.10467 6.11867 6.18102 6.22030 6.23325 6.28241 6.35320 6.41259 6.46420 6.51936 6.60641 6.65590 6.68956 6.73227 6.87496 6.91330 7.06642 7.20116 7.52705 7.58667 7.93239 8.21839 8.53956 8.62143 9.00770 9.61555 11.09873 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.005177 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.782180 B = 5406.731131 C = 7101.237405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.123 4.123 5 C -0.114 4.114 6 C -0.126 4.126 7 C -0.116 4.116 8 C 0.078 3.922 9 H 0.031 0.969 10 C -0.135 4.135 11 N -0.671 5.671 12 C 0.108 3.892 13 C 0.053 3.947 14 C -0.481 4.481 15 H 0.061 0.939 16 C 0.069 3.931 17 N -0.881 5.881 18 Si 0.883 3.117 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.208 4.208 23 C -0.164 4.164 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.353 0.647 43 H 0.025 0.975 44 H 0.035 0.965 45 H 0.258 0.742 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.472 4.132 -6.656 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.161 4.161 5 C -0.152 4.152 6 C -0.164 4.164 7 C -0.154 4.154 8 C -0.032 4.032 9 H 0.049 0.951 10 C -0.193 4.193 11 N -0.306 5.306 12 C -0.021 4.021 13 C 0.052 3.948 14 C -0.520 4.520 15 H 0.079 0.921 16 C -0.133 4.133 17 N -0.519 5.519 18 Si 0.710 3.290 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.245 4.245 23 C -0.202 4.202 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.176 0.824 43 H 0.043 0.957 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.192 4.511 -6.449 13.682 hybrid contribution -0.648 -1.466 0.053 1.604 sum -11.841 3.045 -6.396 13.798 Atomic orbital electron populations 1.21776 0.96184 1.01357 1.01611 1.21556 0.95535 0.97317 1.02117 1.21616 0.95877 0.96404 1.01702 1.21637 0.94784 0.97315 1.02361 1.21550 0.95790 0.96346 1.01474 1.21671 0.94873 0.97173 1.02677 1.21721 0.95286 0.96634 1.01731 1.21480 0.93509 0.95552 0.92699 0.95137 1.21765 1.00859 0.96483 1.00215 1.60497 1.04718 1.40076 1.25342 1.21376 0.89027 0.94562 0.97134 1.18780 0.87655 0.95641 0.92709 1.20404 1.21910 0.92359 1.17295 0.92117 1.24979 0.95734 0.97255 0.95356 1.69998 1.42598 1.09988 1.29296 0.86739 0.80843 0.79044 0.82334 1.20649 1.21405 1.19850 1.22980 1.09341 0.93393 0.98797 1.22519 1.01977 0.95556 1.00179 0.92835 0.92939 0.92986 0.92146 0.91968 0.92150 0.92350 0.92194 0.91718 0.92114 0.92600 0.92461 0.90932 0.91364 0.92399 0.93152 0.93799 0.92386 0.82378 0.95668 0.94627 0.93239 0.91964 0.90836 0.90324 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.15 0.37 -0.95 16 2 C -0.13 -1.29 5.93 -26.74 -0.16 -1.45 16 3 C -0.12 -1.25 5.21 -26.73 -0.14 -1.39 16 4 C -0.12 -1.53 5.21 -26.73 -0.14 -1.67 16 5 C -0.11 -1.43 5.21 -26.73 -0.14 -1.57 16 6 C -0.13 -1.88 5.04 -26.73 -0.13 -2.02 16 7 C -0.12 -1.68 4.81 -26.73 -0.13 -1.81 16 8 C 0.08 1.32 2.64 -67.72 -0.18 1.14 16 9 H 0.03 0.54 7.86 -51.93 -0.41 0.14 16 10 C -0.14 -2.05 9.41 37.16 0.35 -1.70 16 11 N -0.67 -13.82 6.07 -106.73 -0.65 -14.47 16 12 C 0.11 2.46 5.58 -3.82 -0.02 2.44 16 13 C 0.05 1.31 1.76 -155.66 -0.27 1.03 16 14 C -0.48 -12.85 7.47 -34.44 -0.26 -13.11 16 15 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 16 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 17 N -0.88 -24.53 12.92 55.43 0.72 -23.81 16 18 Si 0.88 20.85 29.55 -169.99 -5.02 15.83 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.21 -4.72 9.88 -26.73 -0.26 -4.99 16 23 C -0.16 -3.96 9.45 -26.73 -0.25 -4.21 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.28 6.43 -51.93 -0.33 0.94 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.80 7.39 -51.93 -0.38 0.41 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.35 7.79 5.45 -39.29 -0.21 7.58 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.04 0.77 7.13 -51.93 -0.37 0.39 16 45 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 46 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 47 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 48 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 49 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -26.82 384.09 -10.76 -37.58 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -10.13 Total: 7.58 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -1.47 Total: -28.50 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.07 Total: -38.28 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -26.82 -10.76 -37.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797604087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.537 kcal (2) G-P(sol) polarization free energy of solvation -26.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds