Wall clock time and date at job start Mon Mar 30 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47476 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47578 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47528 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47528 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47578 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46898 * 55.00135 * 8 7 6 10 10 C 1.52995 * 109.47290 * 174.99638 * 8 7 6 11 11 N 1.46892 * 109.47076 * 295.00151 * 8 7 6 12 12 C 1.46909 * 111.00176 * 154.99909 * 11 8 7 13 13 C 1.52996 * 109.47133 * 174.73177 * 12 11 8 14 14 C 1.50691 * 115.55231 * 39.57251 * 13 12 11 15 15 H 1.08009 * 120.00422 * 265.28040 * 14 13 12 16 16 C 1.37879 * 119.99883 * 85.28746 * 14 13 12 17 17 N 1.31510 * 120.00103 * 353.43204 * 16 14 13 18 18 Si 1.86806 * 119.99790 * 173.43404 * 16 14 13 19 19 H 1.48499 * 109.46992 * 89.99878 * 18 16 14 20 20 H 1.48505 * 109.46960 * 209.99733 * 18 16 14 21 21 H 1.48496 * 109.47389 * 329.99537 * 18 16 14 22 22 C 1.53004 * 117.49456 * 253.86385 * 13 12 11 23 23 C 1.52999 * 60.00043 * 252.51031 * 22 13 12 24 24 H 1.09001 * 109.47124 * 299.99295 * 1 2 3 25 25 H 1.08994 * 109.47746 * 59.99597 * 1 2 3 26 26 H 1.09005 * 109.47400 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47124 * 240.00705 * 2 1 3 28 28 H 1.08994 * 109.47746 * 120.00403 * 2 1 3 29 29 H 1.08999 * 109.46998 * 60.00422 * 3 2 1 30 30 H 1.08997 * 109.47488 * 300.00513 * 3 2 1 31 31 H 1.09001 * 109.47111 * 60.00561 * 4 3 2 32 32 H 1.08997 * 109.47071 * 300.00634 * 4 3 2 33 33 H 1.08999 * 109.47249 * 60.00071 * 5 4 3 34 34 H 1.09005 * 109.46851 * 300.00098 * 5 4 3 35 35 H 1.09001 * 109.47439 * 60.00022 * 6 5 4 36 36 H 1.09005 * 109.46833 * 299.99739 * 6 5 4 37 37 H 1.08999 * 109.47249 * 59.99701 * 7 6 5 38 38 H 1.09005 * 109.46851 * 299.99728 * 7 6 5 39 39 H 1.09003 * 109.47033 * 180.02562 * 10 8 7 40 40 H 1.08998 * 109.47425 * 300.00124 * 10 8 7 41 41 H 1.09003 * 109.47253 * 60.00520 * 10 8 7 42 42 H 1.00895 * 111.00621 * 31.04407 * 11 8 7 43 43 H 1.09001 * 109.46625 * 294.73204 * 12 11 8 44 44 H 1.09001 * 109.47237 * 54.72737 * 12 11 8 45 45 H 0.97001 * 120.00306 * 185.07313 * 17 16 14 46 46 H 1.08994 * 117.50244 * 0.02562 * 22 13 12 47 47 H 1.09005 * 117.49813 * 145.02002 * 22 13 12 48 48 H 1.08995 * 117.50212 * 252.51122 * 23 22 13 49 49 H 1.09009 * 117.51268 * 107.47820 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6099 2.8850 -0.0013 7 6 6.1200 4.3275 -0.0013 8 6 7.6499 4.3275 -0.0019 9 1 8.0129 3.7382 -0.8440 10 6 8.1599 5.7645 -0.1277 11 7 8.1401 3.7420 1.2529 12 6 9.4875 3.1821 1.0817 13 6 10.0157 2.7013 2.4347 14 6 9.0053 2.0222 3.3228 15 1 8.4769 2.5915 4.0734 16 6 8.7555 0.6741 3.1774 17 7 9.3001 0.0079 2.1829 18 14 7.6433 -0.2061 4.3932 19 1 6.2396 -0.1471 3.9122 20 1 8.0662 -1.6245 4.5136 21 1 7.7401 0.4536 5.7200 22 6 11.0972 3.5460 3.1114 23 6 11.4585 2.1952 2.4904 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9329 0.9289 -0.8909 32 1 3.9336 0.9285 0.8890 33 1 3.7170 3.3983 0.8904 34 1 3.7162 3.3993 -0.8896 35 1 5.9726 2.3719 -0.8920 36 1 5.9740 2.3705 0.8881 37 1 5.7574 4.8411 0.8891 38 1 5.7559 4.8415 -0.8909 39 1 9.2499 5.7645 -0.1287 40 1 7.7961 6.1989 -1.0589 41 1 7.7969 6.3539 0.7143 42 1 7.5000 3.0439 1.6006 43 1 9.4463 2.3421 0.3883 44 1 10.1519 3.9492 0.6840 45 1 9.0670 -0.9223 2.0370 46 1 11.4321 4.4443 2.5929 47 1 11.0779 3.6107 4.1993 48 1 11.6769 1.3712 3.1696 49 1 12.0312 2.2043 1.5629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797604087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:53 Heat of formation + Delta-G solvation = -38.372582 kcal Electronic energy + Delta-G solvation = -20994.999330 eV Core-core repulsion = 18148.297879 eV Total energy + Delta-G solvation = -2846.701451 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.23324 -37.99741 -36.93754 -34.49706 -33.94674 -31.91963 -30.31137 -27.55095 -27.19352 -25.74440 -23.63040 -22.86214 -21.92076 -21.74348 -21.14526 -20.69345 -17.92239 -17.01726 -16.63762 -16.54555 -16.22684 -15.64210 -15.17709 -15.13508 -14.73968 -14.52636 -14.02512 -13.96240 -13.77266 -13.39703 -13.23300 -12.95696 -12.88511 -12.84240 -12.73041 -12.55889 -12.38187 -12.30407 -12.01310 -11.97814 -11.93337 -11.77845 -11.66665 -11.44314 -11.34439 -11.17421 -10.95997 -10.73132 -10.37939 -9.90525 -8.95461 -8.05858 -6.14649 1.39242 1.42637 1.51002 2.43767 3.21659 3.42458 3.66868 3.72822 3.96130 4.06033 4.13927 4.16566 4.22831 4.39299 4.40235 4.52359 4.52999 4.61871 4.66284 4.76104 4.81785 4.84246 4.85629 4.86680 4.90544 5.00324 5.02541 5.03316 5.06471 5.10792 5.13049 5.16780 5.21179 5.25992 5.29401 5.33309 5.36932 5.44446 5.50486 5.51851 5.55892 5.65839 5.67082 5.81781 6.44719 6.63582 6.82861 6.93860 7.51580 9.01542 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.005177 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.782180 B = 5406.731131 C = 7101.237405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.113 4.113 4 C -0.124 4.124 5 C -0.107 4.107 6 C -0.123 4.123 7 C -0.107 4.107 8 C 0.073 3.927 9 H 0.020 0.980 10 C -0.129 4.129 11 N -0.675 5.675 12 C 0.123 3.877 13 C 0.026 3.974 14 C -0.488 4.488 15 H 0.050 0.950 16 C 0.031 3.969 17 N -0.908 5.908 18 Si 0.937 3.063 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.272 1.272 22 C -0.186 4.186 23 C -0.169 4.169 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.342 0.658 43 H -0.006 1.006 44 H 0.048 0.952 45 H 0.257 0.743 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.901 5.568 -7.266 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.150 4.150 4 C -0.161 4.161 5 C -0.144 4.144 6 C -0.161 4.161 7 C -0.145 4.145 8 C -0.037 4.037 9 H 0.038 0.962 10 C -0.187 4.187 11 N -0.308 5.308 12 C -0.007 4.007 13 C 0.026 3.974 14 C -0.526 4.526 15 H 0.068 0.932 16 C -0.169 4.169 17 N -0.546 5.546 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.196 1.196 22 C -0.223 4.223 23 C -0.207 4.207 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.163 0.837 43 H 0.013 0.987 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.623 5.968 -7.056 15.644 hybrid contribution -0.169 -1.896 0.231 1.917 sum -12.792 4.072 -6.825 15.060 Atomic orbital electron populations 1.21756 0.94847 1.01941 1.02137 1.21572 0.96740 0.96919 1.01563 1.21574 0.94191 0.96880 1.02402 1.21625 0.96338 0.97065 1.01100 1.21499 0.93784 0.96575 1.02552 1.21612 0.96703 0.97164 1.00598 1.21670 0.93348 0.96400 1.03034 1.21662 0.95296 0.96222 0.90541 0.96180 1.21716 1.00224 0.94979 1.01756 1.60534 1.03647 1.39134 1.27507 1.21150 0.90500 0.93774 0.95294 1.18969 0.87721 0.96956 0.93783 1.20537 1.22198 0.92669 1.17232 0.93218 1.25535 0.96987 0.97833 0.96564 1.70099 1.43837 1.10043 1.30645 0.85874 0.79594 0.77736 0.80443 1.19934 1.21522 1.19645 1.22975 1.07116 0.93416 0.98842 1.22427 1.01990 0.95882 1.00420 0.92639 0.92063 0.92440 0.92168 0.93151 0.91999 0.90979 0.92444 0.94068 0.91877 0.90483 0.93169 0.94406 0.91370 0.89542 0.94116 0.90905 0.92381 0.83677 0.98740 0.93352 0.93432 0.89568 0.90903 0.92531 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.13 -2.51 5.93 30.59 0.18 -2.32 16 3 C -0.11 -2.23 5.21 30.59 0.16 -2.07 16 4 C -0.12 -3.01 5.21 30.59 0.16 -2.85 16 5 C -0.11 -2.53 5.21 30.59 0.16 -2.37 16 6 C -0.12 -3.63 5.04 30.59 0.15 -3.48 16 7 C -0.11 -2.93 4.81 30.59 0.15 -2.78 16 8 C 0.07 2.39 2.64 44.91 0.12 2.51 16 9 H 0.02 0.71 7.86 -2.38 -0.02 0.69 16 10 C -0.13 -3.61 9.41 71.98 0.68 -2.93 16 11 N -0.67 -27.85 6.07 -491.58 -2.98 -30.83 16 12 C 0.12 5.61 5.58 86.30 0.48 6.09 16 13 C 0.03 1.31 1.76 -52.93 -0.09 1.22 16 14 C -0.49 -26.42 7.47 25.60 0.19 -26.23 16 15 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 16 C 0.03 1.67 5.39 84.66 0.46 2.13 16 17 N -0.91 -51.68 12.92 21.45 0.28 -51.40 16 18 Si 0.94 43.46 29.55 68.60 2.03 45.48 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 C -0.19 -8.28 9.88 30.60 0.30 -7.98 16 23 C -0.17 -8.18 9.45 30.59 0.29 -7.89 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.37 6.43 -2.38 -0.02 1.36 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.04 1.20 7.39 -2.39 -0.02 1.19 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.34 15.46 5.45 -89.70 -0.49 14.97 16 43 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.05 2.05 7.13 -2.39 -0.02 2.04 16 45 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 46 H 0.09 3.40 8.08 -2.39 -0.02 3.38 16 47 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 48 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 49 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 Total: -1.00 -57.49 384.09 3.78 -53.70 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.36 Total: 33.64 kcal Atomic # 6 Polarization: -54.69 SS G_CDS: 4.10 Total: -50.59 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.71 Total: -82.23 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -57.49 3.78 -53.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797604087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.332 kcal (2) G-P(sol) polarization free energy of solvation -57.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds