Wall clock time and date at job start Mon Mar 30 2020 00:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47352 * 2 1 4 4 C 1.46505 * 119.99829 * 86.15203 * 3 2 1 5 5 C 1.50703 * 109.46637 * 87.07443 * 4 3 2 6 6 H 1.07994 * 120.00506 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99719 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99999 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00281 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47274 * 119.99826 * 9 7 5 12 12 H 1.48499 * 109.47187 * 240.00365 * 9 7 5 13 13 C 1.34774 * 120.00172 * 266.15378 * 3 2 1 14 14 O 1.21279 * 119.99775 * 355.64812 * 13 3 2 15 15 C 1.50704 * 119.99940 * 175.64637 * 13 3 2 16 16 C 1.52996 * 115.54854 * 63.90086 * 15 13 3 17 17 C 1.52999 * 117.49608 * 278.22964 * 15 13 3 18 18 C 1.52997 * 117.50164 * 359.97438 * 17 15 13 19 19 C 1.53003 * 117.49703 * 145.02381 * 17 15 13 20 20 C 1.53001 * 117.49663 * 209.57103 * 15 13 3 21 21 C 1.53001 * 117.49643 * 214.98237 * 20 15 13 22 22 C 1.52997 * 117.49944 * 359.97438 * 20 15 13 23 23 H 1.08996 * 109.46809 * 304.90540 * 1 2 3 24 24 H 1.09005 * 109.46917 * 64.90090 * 1 2 3 25 25 H 1.08993 * 109.47248 * 184.90501 * 1 2 3 26 26 H 1.09001 * 109.47303 * 240.00077 * 2 1 3 27 27 H 1.08995 * 109.46711 * 120.00254 * 2 1 3 28 28 H 1.08995 * 109.47490 * 207.07487 * 4 3 2 29 29 H 1.08997 * 109.47014 * 327.07528 * 4 3 2 30 30 H 0.97005 * 119.99784 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47197 * 58.52480 * 16 15 13 32 32 H 1.09003 * 109.46635 * 178.52242 * 16 15 13 33 33 H 1.09003 * 109.47134 * 298.52202 * 16 15 13 34 34 H 1.08998 * 109.46809 * 69.24638 * 18 17 15 35 35 H 1.09003 * 109.46859 * 189.24382 * 18 17 15 36 36 H 1.09000 * 109.47153 * 309.24294 * 18 17 15 37 37 H 1.08999 * 109.46850 * 67.94582 * 19 17 15 38 38 H 1.09004 * 109.46953 * 187.94556 * 19 17 15 39 39 H 1.08999 * 109.47114 * 307.94753 * 19 17 15 40 40 H 1.08997 * 109.47324 * 68.51646 * 21 20 15 41 41 H 1.08998 * 109.46819 * 188.52522 * 21 20 15 42 42 H 1.09001 * 109.46817 * 308.51848 * 21 20 15 43 43 H 1.09003 * 109.47456 * 60.39466 * 22 20 15 44 44 H 1.09000 * 109.47190 * 180.39127 * 22 20 15 45 45 H 1.09004 * 109.47126 * 300.38821 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1823 2.1002 1.2659 5 6 3.5501 1.8162 1.8313 6 1 4.2295 1.1657 1.3006 7 6 3.9346 2.3878 3.0256 8 7 3.1075 3.1804 3.6717 9 14 5.6302 2.0365 3.7262 10 1 6.3628 1.1217 2.8142 11 1 6.3838 3.3091 3.8602 12 1 5.4923 1.4000 5.0607 13 6 2.3169 1.9904 -1.1645 14 8 2.2569 1.3712 -2.2056 15 6 2.7251 3.4411 -1.1730 16 6 4.0304 3.7635 -0.4429 17 6 1.6111 4.4887 -1.1245 18 6 0.1680 3.9834 -1.0717 19 6 1.8879 5.7789 -0.3501 20 6 2.3924 4.2613 -2.4210 21 6 3.3904 5.3415 -2.8431 22 6 1.6713 3.5458 -3.5651 23 1 -0.3633 0.5880 0.8428 24 1 -0.3633 0.4359 -0.9307 25 1 -0.3633 -1.0238 0.0879 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.0761 3.1709 1.0921 29 1 1.4212 1.7696 1.9727 30 1 3.3781 3.5828 4.5118 31 1 4.8455 3.1914 -0.8862 32 1 4.2434 4.8288 -0.5328 33 1 3.9324 3.5001 0.6102 34 1 -0.0177 3.5146 -0.1054 35 1 -0.5156 4.8218 -1.2061 36 1 0.0091 3.2541 -1.8660 37 1 2.6502 6.3587 -0.8707 38 1 0.9711 6.3643 -0.2798 39 1 2.2397 5.5330 0.6518 40 1 4.3088 4.8707 -3.1937 41 1 2.9597 5.9404 -3.6456 42 1 3.6135 5.9830 -1.9906 43 1 0.7119 3.1689 -3.2106 44 1 1.5065 4.2453 -4.3846 45 1 2.2819 2.7134 -3.9152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:06 Heat of formation + Delta-G solvation = -20.142308 kcal Electronic energy + Delta-G solvation = -22917.423366 eV Core-core repulsion = 19935.679344 eV Total energy + Delta-G solvation = -2981.744021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41540 -37.60377 -35.17295 -32.83635 -30.96917 -30.59782 -29.48737 -28.38039 -27.12426 -25.68108 -24.92873 -23.23458 -22.93374 -20.04773 -17.49389 -17.38569 -16.37945 -15.67443 -15.57673 -14.92332 -14.45369 -14.37971 -13.62926 -13.56512 -13.35149 -12.93437 -12.62071 -12.34000 -12.21512 -12.03456 -11.85203 -11.79864 -11.62996 -11.52165 -11.37565 -11.29814 -11.25404 -11.09190 -10.95468 -10.85535 -10.49985 -10.43431 -10.08307 -10.04010 -9.68647 -9.20562 -8.86052 -8.54259 -8.41219 -7.62517 -6.18472 -4.22973 3.20370 3.29653 3.33351 3.44784 3.91167 4.19173 4.34687 5.01310 5.08851 5.12836 5.17267 5.43003 5.49451 5.57395 5.77782 5.84585 5.88669 5.92253 5.93424 6.04776 6.09177 6.11217 6.23446 6.27717 6.30521 6.34673 6.36517 6.44162 6.46751 6.52702 6.58955 6.66548 6.68952 6.71228 6.79129 6.87916 7.00819 7.23910 7.46064 7.65546 7.77893 8.09265 8.44876 8.82537 9.14821 9.41697 10.87142 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016928 B = 0.008441 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.709067 B = 3316.443767 C = 4048.755017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.591 5.591 4 C 0.235 3.765 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.556 3.444 14 O -0.573 6.573 15 C -0.116 4.116 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.104 4.104 21 C -0.117 4.117 22 C -0.114 4.114 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.473 3.161 -7.357 8.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.011 4.011 3 N -0.321 5.321 4 C 0.115 3.885 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.344 3.656 14 O -0.454 6.454 15 C -0.119 4.119 16 C -0.193 4.193 17 C -0.100 4.100 18 C -0.180 4.180 19 C -0.179 4.179 20 C -0.104 4.104 21 C -0.174 4.174 22 C -0.170 4.170 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.530 2.936 -7.688 8.955 hybrid contribution 0.965 -0.207 0.702 1.211 sum -2.564 2.730 -6.987 7.927 Atomic orbital electron populations 1.22106 0.97032 1.01143 1.01746 1.21215 0.93234 0.84239 1.02409 1.48156 1.62724 1.13153 1.08035 1.19522 0.96663 0.93165 0.79160 1.21502 1.00080 1.29260 1.05953 0.92082 1.24915 0.97412 0.94959 0.96475 1.69939 1.35459 1.30886 1.16289 0.86554 0.84264 0.78334 0.79084 1.19640 1.20776 1.20898 1.19440 0.75789 0.87280 0.83089 1.90538 1.55717 1.66705 1.32434 1.21503 0.98568 0.90261 1.01540 1.21848 0.92488 0.99887 1.05036 1.21699 0.92549 0.96539 0.99178 1.21506 0.93392 1.00718 1.02431 1.21510 1.01252 0.94577 1.00605 1.21767 1.00075 0.98946 0.89640 1.21433 0.97937 0.97038 1.01001 1.21469 1.00508 0.99503 0.95558 0.92500 0.93141 0.92530 0.91036 0.90727 0.93184 0.95294 0.92613 0.93479 0.93141 0.85930 0.91810 0.92551 0.91864 0.91861 0.92746 0.90939 0.92388 0.92688 0.91430 0.92141 0.93863 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.11 2.13 6.22 -4.04 -0.03 2.10 16 3 N -0.59 -12.55 2.46 -175.06 -0.43 -12.98 16 4 C 0.23 5.47 4.69 -5.19 -0.02 5.44 16 5 C -0.53 -13.34 6.83 -34.44 -0.24 -13.58 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.07 1.68 5.36 -17.82 -0.10 1.58 16 8 N -0.89 -23.57 13.29 55.43 0.74 -22.84 16 9 Si 0.89 20.18 29.54 -169.99 -5.02 15.15 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.56 11.84 5.62 -10.98 -0.06 11.78 16 14 O -0.57 -13.02 13.58 5.56 0.08 -12.94 16 15 C -0.12 -2.22 1.39 -155.66 -0.22 -2.43 16 16 C -0.14 -2.68 8.02 37.16 0.30 -2.38 16 17 C -0.10 -1.67 2.07 -154.47 -0.32 -1.99 16 18 C -0.12 -2.01 8.63 37.16 0.32 -1.69 16 19 C -0.12 -1.90 8.50 37.16 0.32 -1.58 16 20 C -0.10 -1.72 2.70 -154.47 -0.42 -2.14 16 21 C -0.12 -1.65 8.51 37.16 0.32 -1.33 16 22 C -0.11 -1.86 8.07 37.16 0.30 -1.56 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.37 7.26 -51.93 -0.38 0.99 16 27 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 28 H 0.05 1.20 5.46 -51.93 -0.28 0.92 16 29 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.87 5.52 -51.93 -0.29 0.59 16 33 H 0.12 2.78 3.80 -51.93 -0.20 2.58 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 36 H 0.06 1.06 5.02 -51.93 -0.26 0.80 16 37 H 0.06 0.88 4.95 -51.93 -0.26 0.63 16 38 H 0.05 0.75 7.94 -51.93 -0.41 0.33 16 39 H 0.07 1.27 7.92 -51.93 -0.41 0.86 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 42 H 0.07 0.91 4.28 -51.93 -0.22 0.69 16 43 H 0.06 1.02 5.06 -51.93 -0.26 0.76 16 44 H 0.04 0.60 8.02 -51.93 -0.42 0.18 16 45 H 0.07 1.36 6.76 -51.93 -0.35 1.01 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -27.13 336.28 -6.53 -33.66 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.50 Total: 4.89 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 0.54 Total: -10.01 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.31 Total: -35.82 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.13 -6.53 -33.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.519 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds