Wall clock time and date at job start Mon Mar 30 2020 00:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99949 * 2 1 4 4 O 1.42896 * 109.46738 * 134.99925 * 3 2 1 5 5 C 1.42908 * 113.99578 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47056 * 149.99927 * 5 4 3 7 7 C 1.53005 * 109.47135 * 59.99797 * 6 5 4 8 8 C 1.53003 * 109.46478 * 60.00183 * 7 6 5 9 9 N 1.46904 * 109.46949 * 180.02562 * 8 7 6 10 10 C 1.46903 * 111.00251 * 58.94653 * 9 8 7 11 11 C 1.52996 * 109.47075 * 164.97534 * 10 9 8 12 12 C 1.46906 * 110.99697 * 295.00119 * 9 8 7 13 13 C 1.50703 * 109.46935 * 284.48879 * 12 9 8 14 14 H 1.07999 * 119.99972 * 3.57361 * 13 12 9 15 15 C 1.37877 * 120.00068 * 183.57675 * 13 12 9 16 16 N 1.31510 * 120.00143 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99833 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47182 * 89.99902 * 17 15 13 19 19 H 1.48500 * 109.46928 * 209.99442 * 17 15 13 20 20 H 1.48494 * 109.47132 * 329.99953 * 17 15 13 21 21 C 1.52997 * 109.47288 * 299.99723 * 8 7 6 22 22 C 1.52993 * 109.47189 * 60.00366 * 21 8 7 23 23 H 1.07996 * 120.00262 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.00285 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99788 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46832 * 14.99793 * 3 2 1 27 27 H 1.08997 * 109.46767 * 254.99898 * 3 2 1 28 28 H 1.08999 * 109.47171 * 30.00383 * 5 4 3 29 29 H 1.09003 * 109.47122 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47416 * 300.00347 * 6 5 4 31 31 H 1.08999 * 109.47537 * 179.97438 * 7 6 5 32 32 H 1.08992 * 109.47469 * 300.00514 * 7 6 5 33 33 H 1.08993 * 109.47521 * 59.99981 * 8 7 6 34 34 H 1.08991 * 109.47617 * 284.98200 * 10 9 8 35 35 H 1.09001 * 109.46728 * 44.98071 * 10 9 8 36 36 H 1.09002 * 109.47154 * 302.95648 * 11 10 9 37 37 H 1.09005 * 109.47203 * 62.95642 * 11 10 9 38 38 H 1.08996 * 109.47110 * 182.95488 * 11 10 9 39 39 H 1.09001 * 109.47277 * 44.48439 * 12 9 8 40 40 H 1.08996 * 109.47062 * 164.49072 * 12 9 8 41 41 H 0.96999 * 120.00184 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.47122 * 300.00546 * 21 8 7 43 43 H 1.09001 * 109.47004 * 180.02562 * 21 8 7 44 44 H 1.08999 * 109.47591 * 180.02562 * 22 21 8 45 45 H 1.09002 * 109.47151 * 59.99561 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2412 0.9527 5 6 3.9084 2.4349 1.0320 6 6 4.4589 2.5906 2.4510 7 6 5.3346 1.3836 2.7936 8 6 6.4968 1.2991 1.8020 9 7 7.3374 0.1399 2.1305 10 6 6.5592 -1.1052 2.0829 11 6 7.5123 -2.3016 2.0556 12 6 7.9793 0.3096 3.4409 13 6 9.1157 1.2919 3.3202 14 1 9.3026 1.7884 2.3795 15 6 9.9169 1.5567 4.4106 16 7 9.6890 0.9525 5.5562 17 14 11.3251 2.7750 4.2611 18 1 10.8396 4.1369 4.5999 19 1 12.4133 2.3907 5.1956 20 1 11.8417 2.7658 2.8689 21 6 5.9463 1.1434 0.3831 22 6 5.0706 2.3503 0.0405 23 1 -0.5400 0.9352 -0.0004 24 1 -0.5401 -0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3854 2.1161 0.2660 27 1 2.4755 1.4867 -0.9926 28 1 3.2845 3.2947 0.7881 29 1 5.0555 3.5008 2.5115 30 1 3.6310 2.6508 3.1574 31 1 5.7272 1.4946 3.8043 32 1 4.7385 0.4732 2.7330 33 1 7.0930 2.2094 1.8626 34 1 5.9211 -1.1688 2.9642 35 1 5.9407 -1.1129 1.1853 36 1 8.1853 -2.2107 1.2030 37 1 8.0942 -2.3237 2.9771 38 1 6.9366 -3.2229 1.9674 39 1 7.2488 0.6854 4.1574 40 1 8.3641 -0.6508 3.7841 41 1 10.2524 1.1391 6.3235 42 1 5.3500 0.2330 0.3225 43 1 6.7743 1.0828 -0.3233 44 1 4.6780 2.2392 -0.9702 45 1 5.6668 3.2607 0.1012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173320698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:50 Heat of formation + Delta-G solvation = -53.406028 kcal Electronic energy + Delta-G solvation = -21603.771985 eV Core-core repulsion = 18620.585540 eV Total energy + Delta-G solvation = -2983.186444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79338 -38.79143 -36.22745 -34.73827 -34.18580 -31.86734 -31.55275 -29.96872 -27.64725 -26.73071 -24.66669 -23.71184 -23.33315 -21.45956 -20.79886 -19.90230 -18.42678 -17.44005 -16.97033 -16.74268 -16.69695 -16.24433 -15.48542 -15.29776 -15.10550 -14.81548 -14.47893 -14.01464 -13.96257 -13.64625 -13.47550 -13.20283 -12.99833 -12.87554 -12.80391 -12.56959 -12.41831 -12.37148 -12.26427 -11.96945 -11.80925 -11.70048 -11.48332 -11.30741 -11.05613 -10.85017 -10.61046 -10.54377 -10.08606 -8.81642 -8.15161 -6.24383 1.28902 1.40373 1.42007 1.53651 2.42376 2.92220 3.15480 3.37641 3.81495 3.90631 4.00038 4.16651 4.21471 4.25386 4.28180 4.36433 4.47602 4.50950 4.58808 4.63785 4.66282 4.67965 4.75128 4.78191 4.92082 4.96396 5.03243 5.04205 5.12428 5.17085 5.25315 5.27563 5.33086 5.35989 5.41909 5.55676 5.61422 5.69845 5.73661 5.77952 6.16163 6.42516 6.54574 6.75883 6.92030 7.44352 8.95014 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.004689 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.786800 B = 5969.512896 C = 6462.873407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.171 4.171 3 C 0.083 3.917 4 O -0.392 6.392 5 C 0.096 3.904 6 C -0.107 4.107 7 C -0.136 4.136 8 C 0.095 3.905 9 N -0.538 5.538 10 C 0.050 3.950 11 C -0.138 4.138 12 C 0.204 3.796 13 C -0.514 4.514 14 H 0.058 0.942 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.965 3.035 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.266 1.266 21 C -0.096 4.096 22 C -0.133 4.133 23 H 0.108 0.892 24 H 0.113 0.887 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.009 0.991 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.029 0.971 38 H 0.076 0.924 39 H -0.031 1.031 40 H 0.004 0.996 41 H 0.262 0.738 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.574 1.864 -12.834 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.189 4.189 3 C 0.007 3.993 4 O -0.312 6.312 5 C 0.039 3.961 6 C -0.145 4.145 7 C -0.175 4.175 8 C -0.014 4.014 9 N -0.261 5.261 10 C -0.078 4.078 11 C -0.195 4.195 12 C 0.078 3.922 13 C -0.552 4.552 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.578 5.578 17 Si 0.790 3.210 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.190 1.190 21 C -0.133 4.133 22 C -0.171 4.171 23 H 0.127 0.873 24 H 0.131 0.869 25 H 0.125 0.875 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.095 0.905 39 H -0.013 1.013 40 H 0.022 0.978 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.083 1.639 -12.909 20.689 hybrid contribution 0.385 0.526 1.185 1.353 sum -15.698 2.165 -11.724 19.712 Atomic orbital electron populations 1.24013 0.95105 1.03242 0.98634 1.22821 0.96264 0.98135 1.01654 1.21697 0.88652 0.96040 0.92871 1.87985 1.44710 1.37839 1.60627 1.22084 0.91766 0.87517 0.94725 1.21562 0.98832 0.97948 0.96196 1.21945 0.97412 0.99371 0.98736 1.21579 0.91272 0.93589 0.94919 1.62330 1.30429 1.01897 1.31440 1.22092 0.95202 0.90701 0.99757 1.21718 0.99481 0.97198 1.01132 1.19444 0.92501 0.95234 0.85069 1.21464 1.13541 1.23757 0.96487 0.92427 1.25874 1.00543 0.98436 0.94858 1.70092 1.40957 1.44622 1.02089 0.85442 0.78489 0.78877 0.78171 1.19809 1.20878 1.19001 1.21413 0.98390 0.99025 0.94517 1.21995 0.96855 0.98754 0.99528 0.87329 0.86856 0.87538 0.91886 0.91606 0.89880 0.90374 0.91451 0.95172 0.92371 0.92454 0.97246 0.89637 0.92387 0.95211 0.90531 1.01304 0.97809 0.92898 0.91659 0.92251 0.89995 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 14.31 67.78 0.97 -1.51 16 2 C -0.17 -3.13 9.89 25.65 0.25 -2.88 16 3 C 0.08 1.55 6.16 71.24 0.44 1.99 16 4 O -0.39 -9.89 8.62 -148.98 -1.28 -11.18 16 5 C 0.10 2.26 2.92 30.59 0.09 2.35 16 6 C -0.11 -3.08 5.66 30.59 0.17 -2.91 16 7 C -0.14 -5.06 4.43 30.60 0.14 -4.92 16 8 C 0.10 3.71 2.14 44.91 0.10 3.81 16 9 N -0.54 -24.21 4.38 -875.51 -3.83 -28.04 16 10 C 0.05 1.95 4.62 86.30 0.40 2.35 16 11 C -0.14 -4.99 9.92 71.98 0.71 -4.28 16 12 C 0.20 11.24 4.47 85.56 0.38 11.63 16 13 C -0.51 -30.06 8.66 25.60 0.22 -29.84 16 14 H 0.06 3.33 7.64 -2.91 -0.02 3.31 16 15 C 0.00 0.01 5.46 84.66 0.46 0.47 16 16 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 17 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 C -0.10 -2.94 4.90 30.59 0.15 -2.79 16 22 C -0.13 -3.14 5.63 30.59 0.17 -2.97 16 23 H 0.11 1.26 7.90 -2.91 -0.02 1.24 16 24 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 25 H 0.11 2.11 8.06 -2.91 -0.02 2.08 16 26 H 0.06 0.99 7.81 -2.38 -0.02 0.97 16 27 H 0.07 1.07 7.87 -2.39 -0.02 1.06 16 28 H 0.08 1.50 7.79 -2.39 -0.02 1.49 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.03 1.33 6.25 -2.39 -0.01 1.32 16 32 H 0.06 2.20 6.28 -2.39 -0.02 2.19 16 33 H 0.06 2.51 7.39 -2.39 -0.02 2.49 16 34 H 0.01 0.38 7.10 -2.39 -0.02 0.36 16 35 H 0.09 2.91 5.70 -2.39 -0.01 2.90 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.03 1.22 6.58 -2.38 -0.02 1.21 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H -0.03 -1.82 5.89 -2.39 -0.01 -1.84 16 40 H 0.00 0.23 6.23 -2.39 -0.01 0.22 16 41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.06 2.01 5.67 -2.39 -0.01 2.00 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 1.58 7.87 -2.39 -0.02 1.56 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -66.80 343.54 2.78 -64.02 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.93 Total: 14.84 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 4.66 Total: -29.49 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -3.55 Total: -85.63 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -1.28 Total: -11.18 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -66.80 2.78 -64.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173320698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.614 kcal (2) G-P(sol) polarization free energy of solvation -66.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds