Wall clock time and date at job start Mon Mar 30 2020 01:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99903 * 2 1 4 4 H 1.09001 * 109.50332 * 329.91578 * 3 2 1 5 5 C 1.53113 * 109.50625 * 89.99998 * 3 2 1 6 6 C 1.53117 * 109.16178 * 177.63501 * 5 3 2 7 7 C 1.53030 * 109.27759 * 302.34166 * 6 5 3 8 8 N 1.46848 * 109.52534 * 59.18003 * 7 6 5 9 9 C 1.46901 * 111.00516 * 174.15922 * 8 7 6 10 10 C 1.53000 * 109.46769 * 56.04415 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47127 * 300.00449 * 11 10 9 13 13 C 1.50699 * 109.46866 * 299.99792 * 12 11 10 14 14 H 1.08000 * 119.99792 * 120.00094 * 13 12 11 15 15 C 1.37886 * 119.99979 * 300.00171 * 13 12 11 16 16 N 1.31512 * 119.99683 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99766 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47430 * 59.99987 * 17 15 13 19 19 H 1.48505 * 109.47183 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47216 * 299.99769 * 17 15 13 21 21 C 1.52997 * 109.47164 * 59.99836 * 12 11 10 22 22 C 1.52996 * 109.47195 * 176.04496 * 9 8 7 23 23 C 1.46845 * 111.19631 * 298.25941 * 8 7 6 24 24 H 1.09001 * 109.46942 * 60.00515 * 1 2 3 25 25 H 1.09004 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47243 * 300.00330 * 1 2 3 27 27 H 1.08999 * 109.52706 * 57.72738 * 5 3 2 28 28 H 1.09004 * 109.57494 * 297.56775 * 5 3 2 29 29 H 1.09000 * 109.50601 * 182.40233 * 6 5 3 30 30 H 1.08998 * 109.50719 * 62.28505 * 6 5 3 31 31 H 1.09000 * 109.46536 * 299.16494 * 7 6 5 32 32 H 1.09005 * 109.46237 * 179.19485 * 7 6 5 33 33 H 1.09001 * 109.46874 * 296.04695 * 9 8 7 34 34 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 35 35 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47050 * 179.97438 * 12 11 10 39 39 H 0.97005 * 119.99280 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.47045 * 180.02562 * 21 12 11 41 41 H 1.09001 * 109.47375 * 59.99966 * 21 12 11 42 42 H 1.08992 * 109.47554 * 299.99900 * 22 9 8 43 43 H 1.09004 * 109.47108 * 60.00150 * 22 9 8 44 44 H 1.08997 * 109.46305 * 181.75590 * 23 8 7 45 45 H 1.09000 * 109.45966 * 301.72146 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3460 1.9995 -0.5150 5 6 2.2181 1.7725 1.4432 6 6 2.8949 3.1460 1.4345 7 6 4.2205 3.0512 0.6757 8 7 3.9679 2.6013 -0.6992 9 6 5.2005 2.6312 -1.4978 10 6 6.2743 1.7856 -0.8101 11 6 7.5583 1.8172 -1.6415 12 6 7.2777 1.2508 -3.0349 13 6 6.7944 -0.1712 -2.9111 14 1 5.8189 -0.4444 -3.2854 15 6 7.5976 -1.1234 -2.3199 16 7 8.7857 -0.7906 -1.8646 17 14 6.9987 -2.8861 -2.1671 18 1 6.7269 -3.4356 -3.5197 19 1 8.0411 -3.7070 -1.5001 20 1 5.7522 -2.9172 -1.3605 21 6 6.2040 2.0964 -3.7225 22 6 4.9195 2.0643 -2.8908 23 6 3.3615 1.2640 -0.7172 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 2.8508 1.0581 1.9698 28 1 1.2538 1.8449 1.9462 29 1 3.0843 3.4650 2.4594 30 1 2.2447 3.8690 0.9421 31 1 4.8755 2.3383 1.1765 32 1 4.6982 4.0308 0.6553 33 1 5.5503 3.6596 -1.5877 34 1 6.4745 2.1894 0.1823 35 1 5.9246 0.7571 -0.7202 36 1 7.9079 2.8457 -1.7312 37 1 8.3232 1.2145 -1.1520 38 1 8.1924 1.2738 -3.6274 39 1 9.3505 -1.4604 -1.4484 40 1 6.0038 1.6926 -4.7150 41 1 6.5535 3.1250 -3.8120 42 1 4.5698 1.0360 -2.8009 43 1 4.1545 2.6668 -3.3807 44 1 3.2152 0.9455 -1.7493 45 1 4.0205 0.5595 -0.2099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:10 Heat of formation + Delta-G solvation = -61.147352 kcal Electronic energy + Delta-G solvation = -22348.072946 eV Core-core repulsion = 19364.550813 eV Total energy + Delta-G solvation = -2983.522133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.71342 -37.87830 -36.07821 -33.14549 -31.58971 -30.32039 -29.34649 -28.05367 -26.45394 -24.83834 -23.76429 -22.70356 -21.36370 -20.50381 -19.41373 -18.32143 -16.62515 -15.93660 -15.68371 -15.09921 -14.90826 -14.60574 -14.28739 -13.92876 -13.60082 -13.34635 -13.13964 -12.96466 -12.57913 -12.53619 -11.90483 -11.66267 -11.41932 -11.19896 -11.01216 -10.90776 -10.79952 -10.76116 -10.64963 -10.54808 -10.36235 -10.11675 -9.91078 -9.68325 -9.38100 -9.10825 -8.88322 -8.60454 -8.24742 -7.69286 -5.91926 -3.96020 3.35842 3.40035 3.44196 3.65847 4.48711 4.51234 4.88779 4.95925 5.09936 5.20222 5.33103 5.38571 5.41989 5.48126 5.60966 5.64696 5.68616 5.79343 5.80186 5.91923 6.00588 6.07526 6.11105 6.19085 6.30567 6.36352 6.42360 6.49467 6.57258 6.59415 6.76235 6.80962 6.90303 7.12441 7.18599 7.27671 7.45494 7.54122 7.56605 7.66410 7.80215 7.99730 8.20928 8.54189 9.06251 9.67173 11.13789 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017135 B = 0.007001 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.684733 B = 3998.609841 C = 4804.558409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.093 3.907 4 H 0.065 0.935 5 C -0.141 4.141 6 C -0.112 4.112 7 C 0.049 3.951 8 N -0.532 5.532 9 C 0.093 3.907 10 C -0.130 4.130 11 C -0.104 4.104 12 C 0.043 3.957 13 C -0.499 4.499 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.106 4.106 22 C -0.102 4.102 23 C 0.053 3.947 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.013 0.987 37 H 0.089 0.911 38 H 0.023 0.977 39 H 0.258 0.742 40 H 0.047 0.953 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.787 6.837 5.374 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.035 3.965 4 H 0.083 0.917 5 C -0.179 4.179 6 C -0.150 4.150 7 C -0.079 4.079 8 N -0.256 5.256 9 C -0.014 4.014 10 C -0.169 4.169 11 C -0.142 4.142 12 C 0.025 3.975 13 C -0.538 4.538 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.202 1.202 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.075 4.075 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.031 0.969 37 H 0.107 0.893 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.106 0.894 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.869 6.910 5.256 15.524 hybrid contribution 0.094 -1.401 0.618 1.534 sum -12.775 5.509 5.875 15.102 Atomic orbital electron populations 1.22738 0.81561 1.02381 0.99640 1.87919 1.19202 1.28150 1.95010 1.22132 0.95476 0.83822 0.95098 0.91700 1.22078 1.00745 0.97636 0.97460 1.21524 0.97062 0.96635 0.99750 1.22101 0.96152 1.00382 0.89261 1.62190 1.27566 1.24478 1.11395 1.21723 0.87301 0.98988 0.93408 1.21998 0.97300 1.00635 0.96951 1.21449 0.96778 0.96871 0.99118 1.18692 0.93323 0.93492 0.92016 1.21106 1.01821 0.93195 1.37641 0.92823 1.24920 0.94925 0.98241 0.95792 1.69862 1.09241 1.33576 1.40444 0.86836 0.78516 0.85485 0.78308 1.20384 1.21470 1.20178 1.21552 0.96370 0.98283 0.98195 1.21565 0.97558 1.01046 0.93803 1.22063 0.93236 0.90657 1.01503 0.94121 0.89919 0.94454 0.91389 0.92286 0.91590 0.91401 0.94124 0.90972 0.91205 0.94900 0.90916 0.96856 0.89270 0.95855 0.93188 0.93458 0.94797 0.90864 0.93822 0.89380 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 101.05 1.09 1.46 16 2 O -0.38 -5.84 10.35 -35.23 -0.36 -6.21 16 3 C 0.09 1.34 2.77 -26.65 -0.07 1.26 16 4 H 0.06 0.88 7.79 -51.93 -0.40 0.48 16 5 C -0.14 -1.80 5.62 -26.61 -0.15 -1.95 16 6 C -0.11 -1.33 6.09 -26.66 -0.16 -1.50 16 7 C 0.05 0.71 4.77 -3.84 -0.02 0.69 16 8 N -0.53 -8.65 4.71 -226.69 -1.07 -9.72 16 9 C 0.09 1.70 2.36 -67.71 -0.16 1.54 16 10 C -0.13 -2.71 4.26 -26.73 -0.11 -2.83 16 11 C -0.10 -2.42 5.24 -26.73 -0.14 -2.56 16 12 C 0.04 1.06 2.59 -91.77 -0.24 0.82 16 13 C -0.50 -13.30 6.61 -34.44 -0.23 -13.53 16 14 H 0.05 1.43 6.71 -52.49 -0.35 1.08 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 17 Si 0.88 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.11 -2.19 5.41 -26.71 -0.14 -2.34 16 22 C -0.10 -1.95 4.48 -26.71 -0.12 -2.07 16 23 C 0.05 0.91 4.32 -3.83 -0.02 0.89 16 24 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.35 7.94 -51.93 -0.41 -0.06 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.66 7.94 -51.93 -0.41 0.24 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.64 6.59 -51.93 -0.34 0.30 16 32 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.03 0.64 6.48 -51.93 -0.34 0.31 16 35 H 0.07 1.72 5.83 -51.93 -0.30 1.42 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.52 4.67 -51.93 -0.24 1.28 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 1.59 5.84 -51.93 -0.30 1.28 16 45 H 0.05 0.94 6.81 -51.93 -0.35 0.59 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -27.94 326.48 -9.45 -37.39 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.98 Total: 0.39 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -0.56 Total: -18.50 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.44 Total: -34.50 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.36 Total: -6.21 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.94 -9.45 -37.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.756 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds