Wall clock time and date at job start Mon Mar 30 2020 01:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99903 * 2 1 4 4 H 1.09001 * 109.50332 * 329.91578 * 3 2 1 5 5 C 1.53113 * 109.50625 * 89.99998 * 3 2 1 6 6 C 1.53117 * 109.16178 * 177.63501 * 5 3 2 7 7 C 1.53030 * 109.27759 * 302.34166 * 6 5 3 8 8 N 1.46848 * 109.52534 * 59.18003 * 7 6 5 9 9 C 1.46901 * 111.00516 * 174.15922 * 8 7 6 10 10 C 1.53000 * 109.46769 * 56.04415 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47127 * 300.00449 * 11 10 9 13 13 C 1.50699 * 109.46866 * 299.99792 * 12 11 10 14 14 H 1.08000 * 119.99792 * 120.00094 * 13 12 11 15 15 C 1.37886 * 119.99979 * 300.00171 * 13 12 11 16 16 N 1.31512 * 119.99683 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99766 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47430 * 59.99987 * 17 15 13 19 19 H 1.48505 * 109.47183 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47216 * 299.99769 * 17 15 13 21 21 C 1.52997 * 109.47164 * 59.99836 * 12 11 10 22 22 C 1.52996 * 109.47195 * 176.04496 * 9 8 7 23 23 C 1.46845 * 111.19631 * 298.25941 * 8 7 6 24 24 H 1.09001 * 109.46942 * 60.00515 * 1 2 3 25 25 H 1.09004 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47243 * 300.00330 * 1 2 3 27 27 H 1.08999 * 109.52706 * 57.72738 * 5 3 2 28 28 H 1.09004 * 109.57494 * 297.56775 * 5 3 2 29 29 H 1.09000 * 109.50601 * 182.40233 * 6 5 3 30 30 H 1.08998 * 109.50719 * 62.28505 * 6 5 3 31 31 H 1.09000 * 109.46536 * 299.16494 * 7 6 5 32 32 H 1.09005 * 109.46237 * 179.19485 * 7 6 5 33 33 H 1.09001 * 109.46874 * 296.04695 * 9 8 7 34 34 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 35 35 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47050 * 179.97438 * 12 11 10 39 39 H 0.97005 * 119.99280 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.47045 * 180.02562 * 21 12 11 41 41 H 1.09001 * 109.47375 * 59.99966 * 21 12 11 42 42 H 1.08992 * 109.47554 * 299.99900 * 22 9 8 43 43 H 1.09004 * 109.47108 * 60.00150 * 22 9 8 44 44 H 1.08997 * 109.46305 * 181.75590 * 23 8 7 45 45 H 1.09000 * 109.45966 * 301.72146 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3460 1.9995 -0.5150 5 6 2.2181 1.7725 1.4432 6 6 2.8949 3.1460 1.4345 7 6 4.2205 3.0512 0.6757 8 7 3.9679 2.6013 -0.6992 9 6 5.2005 2.6312 -1.4978 10 6 6.2743 1.7856 -0.8101 11 6 7.5583 1.8172 -1.6415 12 6 7.2777 1.2508 -3.0349 13 6 6.7944 -0.1712 -2.9111 14 1 5.8189 -0.4444 -3.2854 15 6 7.5976 -1.1234 -2.3199 16 7 8.7857 -0.7906 -1.8646 17 14 6.9987 -2.8861 -2.1671 18 1 6.7269 -3.4356 -3.5197 19 1 8.0411 -3.7070 -1.5001 20 1 5.7522 -2.9172 -1.3605 21 6 6.2040 2.0964 -3.7225 22 6 4.9195 2.0643 -2.8908 23 6 3.3615 1.2640 -0.7172 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 2.8508 1.0581 1.9698 28 1 1.2538 1.8449 1.9462 29 1 3.0843 3.4650 2.4594 30 1 2.2447 3.8690 0.9421 31 1 4.8755 2.3383 1.1765 32 1 4.6982 4.0308 0.6553 33 1 5.5503 3.6596 -1.5877 34 1 6.4745 2.1894 0.1823 35 1 5.9246 0.7571 -0.7202 36 1 7.9079 2.8457 -1.7312 37 1 8.3232 1.2145 -1.1520 38 1 8.1924 1.2738 -3.6274 39 1 9.3505 -1.4604 -1.4484 40 1 6.0038 1.6926 -4.7150 41 1 6.5535 3.1250 -3.8120 42 1 4.5698 1.0360 -2.8009 43 1 4.1545 2.6668 -3.3807 44 1 3.2152 0.9455 -1.7493 45 1 4.0205 0.5595 -0.2099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173332616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:09 Heat of formation + Delta-G solvation = -77.790542 kcal Electronic energy + Delta-G solvation = -22348.794649 eV Core-core repulsion = 19364.550813 eV Total energy + Delta-G solvation = -2984.243836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05040 -39.21446 -37.46520 -34.77805 -33.28545 -31.69494 -30.85653 -29.68883 -27.37776 -26.77539 -25.14510 -23.99509 -22.89884 -21.98094 -20.87871 -19.95798 -17.78822 -17.75654 -17.00336 -16.72699 -16.17419 -16.02293 -15.69644 -15.24359 -14.98296 -14.97827 -14.67231 -14.31611 -14.03330 -13.70810 -13.49292 -13.14058 -12.90042 -12.82774 -12.71510 -12.54429 -12.49895 -12.11953 -12.01948 -11.97800 -11.68403 -11.56667 -11.46543 -11.42043 -10.96647 -10.71459 -10.52243 -10.40528 -10.31093 -9.13567 -8.05030 -6.13953 1.36500 1.38181 1.44156 2.42533 2.55641 3.23183 3.31191 3.80255 3.85852 4.02576 4.06912 4.18935 4.25021 4.35142 4.44198 4.50982 4.54121 4.59215 4.66119 4.70728 4.75816 4.81276 4.84785 4.88414 4.90284 4.99557 5.00647 5.01313 5.06344 5.07840 5.18520 5.24503 5.39008 5.43885 5.53057 5.63395 5.67993 5.72601 5.92150 6.14706 6.21276 6.23232 6.38103 6.45995 6.95884 7.51408 8.99289 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017135 B = 0.007001 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.684733 B = 3998.609841 C = 4804.558409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.097 3.903 4 H 0.080 0.920 5 C -0.138 4.138 6 C -0.103 4.103 7 C 0.044 3.956 8 N -0.520 5.520 9 C 0.100 3.900 10 C -0.117 4.117 11 C -0.099 4.099 12 C 0.037 3.963 13 C -0.502 4.502 14 H 0.049 0.951 15 C 0.016 3.984 16 N -0.918 5.918 17 Si 0.932 3.068 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.100 4.100 22 C -0.095 4.095 23 C 0.057 3.943 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.021 0.979 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.037 0.963 36 H 0.030 0.970 37 H 0.053 0.947 38 H -0.010 1.010 39 H 0.256 0.744 40 H 0.046 0.954 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.134 8.424 5.965 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C 0.039 3.961 4 H 0.098 0.902 5 C -0.176 4.176 6 C -0.141 4.141 7 C -0.084 4.084 8 N -0.244 5.244 9 C -0.008 4.008 10 C -0.156 4.156 11 C -0.138 4.138 12 C 0.019 3.981 13 C -0.540 4.540 14 H 0.067 0.933 15 C -0.182 4.182 16 N -0.558 5.558 17 Si 0.759 3.241 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.204 1.204 21 C -0.138 4.138 22 C -0.133 4.133 23 C -0.072 4.072 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.039 0.961 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.008 0.992 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -15.232 8.497 5.843 18.395 hybrid contribution 0.830 -1.907 0.420 2.122 sum -14.403 6.590 6.263 17.032 Atomic orbital electron populations 1.22964 0.79334 1.03613 1.00989 1.87880 1.21727 1.28726 1.95242 1.22081 0.93942 0.84057 0.95990 0.90236 1.22061 1.01726 0.97625 0.96190 1.21507 0.95480 0.96338 1.00761 1.22261 0.97762 1.00345 0.88054 1.62260 1.25980 1.23615 1.12538 1.21615 0.87319 0.98877 0.92966 1.21830 0.96932 0.99384 0.97464 1.21305 0.97103 0.96930 0.98424 1.18701 0.93179 0.93559 0.92665 1.21357 1.01371 0.94515 1.36758 0.93289 1.25555 0.95179 1.01524 0.95950 1.69998 1.10138 1.34340 1.41368 0.86003 0.77850 0.81848 0.78375 1.19659 1.21217 1.20371 1.21456 0.95851 0.98564 0.97940 1.21472 0.97139 1.00325 0.94328 1.22000 0.94436 0.90183 1.00564 0.93113 0.88910 0.92659 0.93246 0.89895 0.89330 0.89964 0.96079 0.89484 0.89555 0.93858 0.94385 0.95103 0.92872 0.99199 0.93460 0.93491 0.92648 0.93115 0.91301 0.90931 0.96937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.82 113.37 1.23 1.75 16 2 O -0.42 -12.23 10.35 -148.98 -1.54 -13.77 16 3 C 0.10 2.64 2.77 30.65 0.08 2.73 16 4 H 0.08 1.93 7.79 -2.39 -0.02 1.91 16 5 C -0.14 -3.19 5.62 30.67 0.17 -3.02 16 6 C -0.10 -2.11 6.09 30.64 0.19 -1.92 16 7 C 0.04 1.16 4.77 86.32 0.41 1.57 16 8 N -0.52 -16.06 4.71 -871.12 -4.10 -20.16 16 9 C 0.10 3.52 2.36 44.91 0.11 3.63 16 10 C -0.12 -4.93 4.26 30.59 0.13 -4.80 16 11 C -0.10 -4.70 5.24 30.60 0.16 -4.54 16 12 C 0.04 1.87 2.59 -11.54 -0.03 1.84 16 13 C -0.50 -27.49 6.61 25.60 0.17 -27.32 16 14 H 0.05 2.68 6.71 -2.91 -0.02 2.66 16 15 C 0.02 0.89 5.30 84.66 0.45 1.33 16 16 N -0.92 -54.12 11.32 21.45 0.24 -53.88 16 17 Si 0.93 45.30 29.54 68.60 2.03 47.33 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 21 C -0.10 -4.06 5.41 30.61 0.17 -3.89 16 22 C -0.10 -3.52 4.48 30.61 0.14 -3.38 16 23 C 0.06 1.91 4.32 86.33 0.37 2.29 16 24 H 0.05 0.88 8.09 -2.39 -0.02 0.86 16 25 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.05 0.87 7.94 -2.39 -0.02 0.85 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.54 7.94 -2.39 -0.02 1.52 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.02 0.65 6.59 -2.39 -0.02 0.63 16 32 H 0.09 2.08 8.12 -2.38 -0.02 2.06 16 33 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.04 1.70 6.48 -2.39 -0.02 1.68 16 35 H 0.04 1.86 5.83 -2.39 -0.01 1.85 16 36 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 2.92 6.07 -2.39 -0.01 2.90 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 42 H 0.05 2.12 4.67 -2.39 -0.01 2.11 16 43 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.07 2.64 5.84 -2.39 -0.01 2.63 16 45 H 0.01 0.50 6.81 -2.39 -0.02 0.49 16 Total: -1.00 -62.11 326.48 1.31 -60.80 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.94 Total: 13.43 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.74 Total: -33.75 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -3.86 Total: -74.04 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.54 Total: -13.77 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -62.11 1.31 -60.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.992 kcal (2) G-P(sol) polarization free energy of solvation -62.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds