Wall clock time and date at job start Mon Mar 30 2020 01:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47282 * 2 1 4 4 H 1.09002 * 109.47575 * 305.00287 * 3 2 1 5 5 C 1.50693 * 109.47352 * 185.00231 * 3 2 1 6 6 H 1.08006 * 120.00493 * 240.00058 * 5 3 2 7 7 C 1.37882 * 120.00084 * 60.00058 * 5 3 2 8 8 N 1.31507 * 119.99568 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00164 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46692 * 60.00330 * 9 7 5 11 11 H 1.48490 * 109.47000 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47320 * 300.00331 * 9 7 5 13 13 N 1.46905 * 109.47051 * 65.00009 * 3 2 1 14 14 C 1.46331 * 110.99744 * 64.67616 * 13 3 2 15 15 C 1.53480 * 107.60450 * 186.49631 * 14 13 3 16 16 N 1.46346 * 107.54435 * 296.86646 * 15 14 13 17 17 C 1.46958 * 113.33514 * 60.86759 * 16 15 14 18 18 H 1.09002 * 110.23241 * 71.61729 * 17 16 15 19 19 C 1.54107 * 105.54688 * 190.68660 * 17 16 15 20 20 C 1.52502 * 111.08826 * 216.70787 * 19 17 16 21 21 N 1.47474 * 109.73964 * 329.73168 * 20 19 17 22 22 C 1.48195 * 108.24685 * 302.58046 * 21 20 19 23 23 C 1.53256 * 107.41458 * 107.53195 * 22 21 20 24 24 C 1.46973 * 111.00359 * 191.78164 * 13 3 2 25 25 H 1.09008 * 110.23132 * 305.05432 * 24 13 3 26 26 H 1.09005 * 109.47138 * 299.99858 * 1 2 3 27 27 H 1.08990 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47375 * 59.99370 * 1 2 3 29 29 H 1.08993 * 109.47704 * 120.00312 * 2 1 3 30 30 H 1.09005 * 109.46894 * 240.00886 * 2 1 3 31 31 H 0.97004 * 119.99788 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.82806 * 306.02105 * 14 13 3 33 33 H 1.08993 * 109.83129 * 66.89927 * 14 13 3 34 34 H 1.09003 * 109.84848 * 56.37471 * 15 14 13 35 35 H 1.09005 * 109.84229 * 177.29169 * 15 14 13 36 36 H 1.00903 * 111.00327 * 295.16539 * 16 15 14 37 37 H 1.09002 * 109.15447 * 337.11797 * 19 17 16 38 38 H 1.09000 * 109.15782 * 96.34989 * 19 17 16 39 39 H 1.08996 * 109.42184 * 89.81329 * 20 19 17 40 40 H 1.09001 * 109.42640 * 209.64650 * 20 19 17 41 41 H 1.00907 * 111.00100 * 180.53161 * 21 20 19 42 42 H 1.08999 * 109.87354 * 227.00638 * 22 21 20 43 43 H 1.08998 * 109.86948 * 348.05806 * 22 21 20 44 44 H 1.08998 * 109.38066 * 43.02272 * 23 22 21 45 45 H 1.08994 * 109.38399 * 162.81361 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8813 -1.3820 10 1 6.5975 0.1472 -0.2351 11 1 6.3976 0.2179 -2.6511 12 1 6.4994 2.2815 -1.3823 13 7 1.6514 2.0993 1.2553 14 6 2.3066 1.4686 2.4017 15 6 1.7254 2.1005 3.6739 16 7 2.0741 3.5217 3.6596 17 6 1.5231 4.2447 2.5048 18 1 0.4443 4.3592 2.6116 19 6 2.2101 5.6241 2.5149 20 6 1.2456 6.7207 2.0759 21 7 0.2620 6.1681 1.1262 22 6 0.9998 5.5847 -0.0190 23 6 0.8994 4.0600 0.0995 24 6 1.8732 3.5503 1.1812 25 1 2.9074 3.7601 0.9079 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 3.8291 -0.0602 -2.9504 32 1 2.1083 0.3968 2.3973 33 1 3.3811 1.6459 2.3571 34 1 0.6415 1.9856 3.6823 35 1 2.1549 1.6220 4.5542 36 1 3.0730 3.6497 3.7231 37 1 2.5628 5.8406 3.5233 38 1 3.0616 5.6045 1.8347 39 1 0.7249 7.1159 2.9481 40 1 1.8040 7.5230 1.5937 41 1 -0.3815 6.8810 0.8162 42 1 0.5502 5.9137 -0.9558 43 1 2.0452 5.8910 0.0190 44 1 -0.1196 3.7847 0.3714 45 1 1.1539 3.6052 -0.8577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246612572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:51 Heat of formation + Delta-G solvation = 17.161098 kcal Electronic energy + Delta-G solvation = -22849.643572 eV Core-core repulsion = 19901.809899 eV Total energy + Delta-G solvation = -2947.833673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.53229 -36.79687 -35.05062 -32.56073 -31.62564 -31.10057 -30.09808 -26.89717 -26.05297 -24.07823 -23.86842 -22.37299 -20.80296 -20.13987 -19.63542 -18.77019 -16.50339 -16.22872 -15.32751 -14.86187 -14.62431 -14.39498 -14.17550 -14.01356 -13.61133 -13.10575 -12.81147 -12.58293 -12.24047 -11.93834 -11.77910 -11.38267 -11.22884 -11.15489 -11.10569 -10.85165 -10.77502 -10.59624 -10.56224 -10.41353 -10.28023 -10.07377 -9.79695 -9.59924 -9.32145 -9.03303 -8.33397 -8.30314 -7.71293 -6.99126 -5.98174 -4.11672 3.24785 3.30592 3.32861 4.37686 4.38608 4.70769 4.92671 5.10067 5.24397 5.28501 5.44844 5.58251 5.65723 5.75487 5.84932 5.86707 5.94050 6.05264 6.13300 6.15190 6.22522 6.31655 6.35073 6.39881 6.49747 6.59527 6.70086 6.73526 6.82554 6.89677 6.98092 7.15718 7.21293 7.23887 7.42062 7.50684 7.64026 7.64581 7.79024 7.86684 8.03655 8.20205 8.38705 8.56941 8.98845 9.55230 10.99861 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.007371 C = 0.006928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.293445 B = 3797.646387 C = 4040.481105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.044 0.956 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.280 1.280 13 N -0.536 5.536 14 C 0.031 3.969 15 C 0.062 3.938 16 N -0.700 5.700 17 C 0.114 3.886 18 H 0.103 0.897 19 C -0.124 4.124 20 C 0.056 3.944 21 N -0.673 5.673 22 C 0.045 3.955 23 C -0.099 4.099 24 C 0.075 3.925 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.031 0.969 30 H 0.090 0.910 31 H 0.261 0.739 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.329 0.671 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.026 0.974 41 H 0.332 0.668 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 8.745 6.786 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.062 0.938 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.261 5.261 14 C -0.099 4.099 15 C -0.067 4.067 16 N -0.328 5.328 17 C 0.005 3.995 18 H 0.121 0.879 19 C -0.163 4.163 20 C -0.074 4.074 21 N -0.302 5.302 22 C -0.084 4.084 23 C -0.138 4.138 24 C -0.035 4.035 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.147 0.853 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.380 8.124 7.418 12.246 hybrid contribution 3.060 0.508 -1.565 3.474 sum -2.320 8.632 5.853 10.684 Atomic orbital electron populations 1.21691 0.98841 0.98295 1.00564 1.21603 0.92258 0.99368 1.01716 1.19322 0.92695 0.90998 0.86200 0.93791 1.21689 0.93077 1.37907 1.05203 0.93118 1.24888 0.97556 0.95170 0.95762 1.69858 1.34731 1.38355 1.09390 0.86791 0.86542 0.78100 0.77343 1.20430 1.21220 1.20538 1.61728 1.58379 1.01308 1.04656 1.22566 0.96375 0.99491 0.91497 1.22059 1.01094 0.87284 0.96298 1.60230 1.16978 1.12729 1.42891 1.21901 1.00395 0.90168 0.87081 0.87945 1.22078 0.97731 0.95214 1.01254 1.22030 0.93806 0.95310 0.96245 1.62123 1.17304 1.35793 1.15019 1.22489 0.97055 0.96985 0.91905 1.21935 1.00277 0.92366 0.99184 1.22428 0.96860 0.89223 0.94996 0.94153 0.93308 0.95754 0.94347 0.95069 0.89152 0.92892 0.90999 0.95022 0.90784 0.91786 0.85367 0.90938 0.92649 0.91236 0.95589 0.85271 0.92656 0.93075 0.90973 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.80 37.16 0.36 -2.43 16 2 C -0.11 -2.62 5.14 -26.73 -0.14 -2.76 16 3 C 0.21 5.12 1.52 -68.87 -0.10 5.01 16 4 H 0.04 1.16 5.70 -51.93 -0.30 0.87 16 5 C -0.54 -14.21 7.14 -34.44 -0.25 -14.46 16 6 H 0.05 1.37 6.11 -52.48 -0.32 1.04 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.62 11.29 55.43 0.63 -24.00 16 9 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.54 -11.01 3.58 -219.14 -0.78 -11.79 16 14 C 0.03 0.60 4.99 -3.88 -0.02 0.58 16 15 C 0.06 1.02 6.82 -3.88 -0.03 0.99 16 16 N -0.70 -11.03 6.21 -105.93 -0.66 -11.69 16 17 C 0.11 1.84 2.52 -66.84 -0.17 1.67 16 18 H 0.10 1.80 7.04 -51.93 -0.37 1.43 16 19 C -0.12 -1.70 4.81 -26.41 -0.13 -1.83 16 20 C 0.06 0.67 6.28 -3.76 -0.02 0.65 16 21 N -0.67 -8.51 5.66 -112.49 -0.64 -9.14 16 22 C 0.05 0.65 6.15 -2.98 -0.02 0.63 16 23 C -0.10 -1.75 4.74 -25.96 -0.12 -1.88 16 24 C 0.08 1.41 1.87 -66.77 -0.12 1.29 16 25 H 0.04 0.88 6.57 -51.92 -0.34 0.54 16 26 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.73 6.18 -51.93 -0.32 0.41 16 30 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.07 1.46 6.09 -51.93 -0.32 1.14 16 33 H 0.03 0.68 6.48 -51.93 -0.34 0.34 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.33 5.07 8.41 -39.29 -0.33 4.74 16 37 H 0.07 0.93 7.77 -51.93 -0.40 0.53 16 38 H 0.05 0.81 6.65 -51.93 -0.35 0.47 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.29 8.13 -51.93 -0.42 -0.13 16 41 H 0.33 3.47 8.91 -39.29 -0.35 3.12 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.76 6.52 -51.93 -0.34 0.42 16 44 H 0.07 1.33 8.12 -51.93 -0.42 0.90 16 45 H 0.07 1.40 6.06 -51.93 -0.31 1.08 16 LS Contribution 320.28 15.07 4.83 4.83 Total: -1.00 -26.73 320.28 -10.10 -36.83 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -7.61 Total: 9.66 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.85 Total: -10.78 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -1.45 Total: -56.62 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.73 -10.10 -36.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246612572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.991 kcal (2) G-P(sol) polarization free energy of solvation -26.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds