Wall clock time and date at job start Mon Mar 30 2020 01:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47282 * 2 1 4 4 H 1.09002 * 109.47575 * 305.00287 * 3 2 1 5 5 C 1.50693 * 109.47352 * 185.00231 * 3 2 1 6 6 H 1.08006 * 120.00493 * 240.00058 * 5 3 2 7 7 C 1.37882 * 120.00084 * 60.00058 * 5 3 2 8 8 N 1.31507 * 119.99568 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00164 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46692 * 60.00330 * 9 7 5 11 11 H 1.48490 * 109.47000 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47320 * 300.00331 * 9 7 5 13 13 N 1.46905 * 109.47051 * 65.00009 * 3 2 1 14 14 C 1.46331 * 110.99744 * 64.67616 * 13 3 2 15 15 C 1.53480 * 107.60450 * 186.49631 * 14 13 3 16 16 N 1.46346 * 107.54435 * 296.86646 * 15 14 13 17 17 C 1.46958 * 113.33514 * 60.86759 * 16 15 14 18 18 H 1.09002 * 110.23241 * 71.61729 * 17 16 15 19 19 C 1.54107 * 105.54688 * 190.68660 * 17 16 15 20 20 C 1.52502 * 111.08826 * 216.70787 * 19 17 16 21 21 N 1.47474 * 109.73964 * 329.73168 * 20 19 17 22 22 C 1.48195 * 108.24685 * 302.58046 * 21 20 19 23 23 C 1.53256 * 107.41458 * 107.53195 * 22 21 20 24 24 C 1.46973 * 111.00359 * 191.78164 * 13 3 2 25 25 H 1.09008 * 110.23132 * 305.05432 * 24 13 3 26 26 H 1.09005 * 109.47138 * 299.99858 * 1 2 3 27 27 H 1.08990 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47375 * 59.99370 * 1 2 3 29 29 H 1.08993 * 109.47704 * 120.00312 * 2 1 3 30 30 H 1.09005 * 109.46894 * 240.00886 * 2 1 3 31 31 H 0.97004 * 119.99788 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.82806 * 306.02105 * 14 13 3 33 33 H 1.08993 * 109.83129 * 66.89927 * 14 13 3 34 34 H 1.09003 * 109.84848 * 56.37471 * 15 14 13 35 35 H 1.09005 * 109.84229 * 177.29169 * 15 14 13 36 36 H 1.00903 * 111.00327 * 295.16539 * 16 15 14 37 37 H 1.09002 * 109.15447 * 337.11797 * 19 17 16 38 38 H 1.09000 * 109.15782 * 96.34989 * 19 17 16 39 39 H 1.08996 * 109.42184 * 89.81329 * 20 19 17 40 40 H 1.09001 * 109.42640 * 209.64650 * 20 19 17 41 41 H 1.00907 * 111.00100 * 180.53161 * 21 20 19 42 42 H 1.08999 * 109.87354 * 227.00638 * 22 21 20 43 43 H 1.08998 * 109.86948 * 348.05806 * 22 21 20 44 44 H 1.08998 * 109.38066 * 43.02272 * 23 22 21 45 45 H 1.08994 * 109.38399 * 162.81361 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8889 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8813 -1.3820 10 1 6.5975 0.1472 -0.2351 11 1 6.3976 0.2179 -2.6511 12 1 6.4994 2.2815 -1.3823 13 7 1.6514 2.0993 1.2553 14 6 2.3066 1.4686 2.4017 15 6 1.7254 2.1005 3.6739 16 7 2.0741 3.5217 3.6596 17 6 1.5231 4.2447 2.5048 18 1 0.4443 4.3592 2.6116 19 6 2.2101 5.6241 2.5149 20 6 1.2456 6.7207 2.0759 21 7 0.2620 6.1681 1.1262 22 6 0.9998 5.5847 -0.0190 23 6 0.8994 4.0600 0.0995 24 6 1.8732 3.5503 1.1812 25 1 2.9074 3.7601 0.9079 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 3.8291 -0.0602 -2.9504 32 1 2.1083 0.3968 2.3973 33 1 3.3811 1.6459 2.3571 34 1 0.6415 1.9856 3.6823 35 1 2.1549 1.6220 4.5542 36 1 3.0730 3.6497 3.7231 37 1 2.5628 5.8406 3.5233 38 1 3.0616 5.6045 1.8347 39 1 0.7249 7.1159 2.9481 40 1 1.8040 7.5230 1.5937 41 1 -0.3815 6.8810 0.8162 42 1 0.5502 5.9137 -0.9558 43 1 2.0452 5.8910 0.0190 44 1 -0.1196 3.7847 0.3714 45 1 1.1539 3.6052 -0.8577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246612572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:50 Heat of formation + Delta-G solvation = -2.012971 kcal Electronic energy + Delta-G solvation = -22850.475022 eV Core-core repulsion = 19901.809899 eV Total energy + Delta-G solvation = -2948.665123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97671 -38.19027 -36.58917 -34.34798 -33.27587 -32.52363 -31.53594 -28.69195 -27.51247 -25.62413 -25.32256 -24.03051 -22.20973 -21.59238 -21.00413 -20.51430 -18.23685 -17.65955 -17.02735 -16.30016 -16.16026 -15.83360 -15.57891 -15.55302 -14.94654 -14.74550 -14.43958 -14.21035 -13.64222 -13.51418 -13.21805 -13.12542 -12.97049 -12.78473 -12.58355 -12.54047 -12.32422 -12.11041 -11.94912 -11.86509 -11.77596 -11.59220 -11.53725 -11.35671 -11.05037 -10.94590 -10.36968 -9.34826 -9.15906 -8.77912 -8.02441 -6.25837 1.31862 1.33289 1.40068 2.36190 3.12789 3.26965 3.30762 3.59323 3.94345 4.09552 4.22335 4.33994 4.38971 4.44677 4.50978 4.51423 4.58951 4.62821 4.72077 4.75569 4.83448 4.86751 4.90969 4.96434 5.00237 5.05384 5.17435 5.29237 5.30686 5.33976 5.42731 5.44107 5.51574 5.55091 5.66002 5.83131 6.02488 6.08213 6.24421 6.28065 6.40735 6.54926 6.64994 6.83292 6.97088 7.44124 8.89935 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.007371 C = 0.006928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.293445 B = 3797.646387 C = 4040.481105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 C 0.222 3.778 4 H 0.016 0.984 5 C -0.546 4.546 6 H 0.039 0.961 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.940 3.060 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.278 1.278 13 N -0.533 5.533 14 C 0.033 3.967 15 C 0.074 3.926 16 N -0.692 5.692 17 C 0.124 3.876 18 H 0.097 0.903 19 C -0.119 4.119 20 C 0.059 3.941 21 N -0.676 5.676 22 C 0.055 3.945 23 C -0.091 4.091 24 C 0.078 3.922 25 H 0.007 0.993 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.060 0.940 31 H 0.261 0.739 32 H 0.062 0.938 33 H 0.008 0.992 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.334 0.666 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.349 0.651 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.725 10.169 8.394 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C 0.115 3.885 4 H 0.033 0.967 5 C -0.585 4.585 6 H 0.057 0.943 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.257 5.257 14 C -0.097 4.097 15 C -0.056 4.056 16 N -0.320 5.320 17 C 0.014 3.986 18 H 0.115 0.885 19 C -0.158 4.158 20 C -0.070 4.070 21 N -0.307 5.307 22 C -0.075 4.075 23 C -0.130 4.130 24 C -0.032 4.032 25 H 0.025 0.975 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.151 0.849 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.167 0.833 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.828 9.570 9.042 14.398 hybrid contribution 3.187 0.059 -2.055 3.792 sum -2.641 9.628 6.987 12.186 Atomic orbital electron populations 1.21531 0.96292 0.99615 1.00548 1.21457 0.94486 0.98608 0.99976 1.19063 0.91213 0.91199 0.87005 0.96656 1.21903 0.94436 1.37375 1.04824 0.94261 1.25548 1.01347 0.95144 0.95666 1.69982 1.36073 1.39009 1.09715 0.85898 0.82050 0.78027 0.77354 1.20173 1.20707 1.20321 1.61729 1.58011 1.02336 1.03593 1.22603 0.95089 0.99248 0.92793 1.22013 1.00971 0.87399 0.95211 1.60266 1.17310 1.12193 1.42214 1.21767 1.00237 0.91292 0.85328 0.88483 1.22035 0.97580 0.94282 1.01902 1.22043 0.93523 0.94718 0.96763 1.61980 1.17553 1.36911 1.14278 1.22288 0.97226 0.94426 0.93550 1.21820 0.99320 0.94982 0.96913 1.22489 0.95226 0.88258 0.97266 0.97513 0.92563 0.93742 0.94976 0.95364 0.92178 0.92985 0.91991 0.97375 0.90751 0.89286 0.84891 0.89438 0.94056 0.89326 0.94176 0.83312 0.91156 0.93676 0.91523 0.94833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.80 71.98 0.71 -4.30 16 2 C -0.11 -5.17 5.14 30.59 0.16 -5.01 16 3 C 0.22 11.05 1.52 44.17 0.07 11.12 16 4 H 0.02 0.87 5.70 -2.39 -0.01 0.85 16 5 C -0.55 -29.80 7.14 25.60 0.18 -29.62 16 6 H 0.04 2.19 6.11 -2.91 -0.02 2.17 16 7 C 0.02 1.26 5.29 84.66 0.45 1.71 16 8 N -0.91 -52.10 11.29 21.45 0.24 -51.86 16 9 Si 0.94 44.10 29.54 68.60 2.03 46.13 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 N -0.53 -22.32 3.58 -847.21 -3.03 -25.35 16 14 C 0.03 1.28 4.99 86.57 0.43 1.71 16 15 C 0.07 2.29 6.82 86.57 0.59 2.88 16 16 N -0.69 -20.50 6.21 -489.04 -3.04 -23.54 16 17 C 0.12 3.82 2.52 45.45 0.11 3.94 16 18 H 0.10 3.20 7.04 -2.39 -0.02 3.18 16 19 C -0.12 -3.03 4.81 30.80 0.15 -2.88 16 20 C 0.06 1.23 6.28 86.03 0.54 1.77 16 21 N -0.68 -15.43 5.66 -509.81 -2.89 -18.32 16 22 C 0.06 1.53 6.15 86.14 0.53 2.06 16 23 C -0.09 -3.31 4.74 31.09 0.15 -3.16 16 24 C 0.08 2.97 1.87 45.49 0.08 3.06 16 25 H 0.01 0.31 6.57 -2.38 -0.02 0.30 16 26 H 0.06 2.19 7.75 -2.38 -0.02 2.18 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.03 1.34 6.18 -2.39 -0.01 1.33 16 30 H 0.06 3.29 5.95 -2.38 -0.01 3.28 16 31 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.06 2.53 6.09 -2.39 -0.01 2.51 16 33 H 0.01 0.35 6.48 -2.39 -0.02 0.34 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.33 9.69 8.41 -89.69 -0.75 8.93 16 37 H 0.09 1.98 7.77 -2.39 -0.02 1.96 16 38 H 0.04 1.17 6.65 -2.39 -0.02 1.15 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.04 0.75 8.13 -2.39 -0.02 0.73 16 41 H 0.35 6.20 8.91 -89.69 -0.80 5.40 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.31 6.52 -2.39 -0.02 1.30 16 44 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16 45 H 0.03 1.43 6.06 -2.39 -0.01 1.42 16 Total: -1.00 -59.10 320.28 -3.10 -62.20 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.56 Total: 27.47 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 4.15 Total: -16.73 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -8.71 Total: -119.06 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.10 -3.10 -62.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246612572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.188 kcal (2) G-P(sol) polarization free energy of solvation -59.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds