Wall clock time and date at job start Mon Mar 30 2020 01:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47136 * 2 1 4 4 H 1.08998 * 109.47472 * 52.90690 * 3 2 1 5 5 C 1.50698 * 109.47305 * 172.90839 * 3 2 1 6 6 H 1.08001 * 120.00185 * 119.99653 * 5 3 2 7 7 C 1.37885 * 119.99845 * 300.00213 * 5 3 2 8 8 N 1.31510 * 120.00029 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99905 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47274 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47379 * 119.99841 * 9 7 5 12 12 H 1.48503 * 109.46934 * 239.99598 * 9 7 5 13 13 N 1.46902 * 109.47140 * 292.90514 * 3 2 1 14 14 C 1.46899 * 111.00119 * 131.26942 * 13 3 2 15 15 C 1.53002 * 109.57514 * 293.35683 * 14 13 3 16 16 N 1.46898 * 109.47045 * 293.84738 * 15 14 13 17 17 C 1.53138 * 109.58156 * 173.09425 * 14 13 3 18 18 N 1.47185 * 109.22487 * 240.23050 * 17 14 13 19 19 C 1.46939 * 111.01549 * 297.89633 * 18 17 14 20 20 C 1.53127 * 109.35630 * 62.02799 * 19 18 17 21 21 C 1.53382 * 109.58145 * 53.61542 * 14 13 3 22 22 C 1.53395 * 108.59448 * 60.05235 * 21 14 13 23 23 C 1.46939 * 111.13059 * 61.91530 * 18 17 14 24 24 H 1.09004 * 109.47639 * 303.01440 * 1 2 3 25 25 H 1.09006 * 109.46806 * 63.01051 * 1 2 3 26 26 H 1.08996 * 109.47277 * 183.00947 * 1 2 3 27 27 H 1.09000 * 109.47181 * 239.99482 * 2 1 3 28 28 H 1.09000 * 109.46551 * 119.99686 * 2 1 3 29 29 H 0.96994 * 119.99985 * 180.02562 * 8 7 5 30 30 H 1.00895 * 111.00001 * 7.31713 * 13 3 2 31 31 H 1.09004 * 109.47531 * 53.85140 * 15 14 13 32 32 H 1.09000 * 109.46926 * 173.84861 * 15 14 13 33 33 H 1.00904 * 110.99790 * 174.00245 * 16 15 14 34 34 H 1.00898 * 111.00054 * 297.95528 * 16 15 14 35 35 H 1.09004 * 109.48429 * 0.15356 * 17 14 13 36 36 H 1.09004 * 109.49017 * 120.21316 * 17 14 13 37 37 H 1.09002 * 109.49194 * 302.06407 * 19 18 17 38 38 H 1.08999 * 109.50899 * 182.00711 * 19 18 17 39 39 H 1.08996 * 109.57984 * 240.24520 * 20 19 18 40 40 H 1.09002 * 109.68159 * 119.92464 * 20 19 18 41 41 H 1.09001 * 110.11323 * 299.41711 * 21 14 13 42 42 H 1.09003 * 109.57037 * 178.81424 * 22 21 14 43 43 H 1.08999 * 109.57828 * 299.19552 * 22 21 14 44 44 H 1.09006 * 109.49179 * 58.00509 * 23 18 17 45 45 H 1.08999 * 109.49231 * 178.05621 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5768 1.9916 0.8197 5 6 3.5367 1.4461 0.1754 6 1 4.1685 1.8813 -0.5848 7 6 4.0996 0.8937 1.3064 8 7 3.3303 0.3642 2.2323 9 14 5.9549 0.8976 1.5235 10 1 6.5895 1.5474 0.3486 11 1 6.3076 1.6482 2.7553 12 1 6.4427 -0.5002 1.6390 13 7 1.6950 2.0838 -1.2758 14 6 1.0711 3.3951 -1.0541 15 6 -0.2885 3.2081 -0.3776 16 7 -1.2035 2.5213 -1.2990 17 6 0.8826 4.1074 -2.3966 18 7 1.6340 5.3729 -2.3834 19 6 1.1278 6.2755 -1.3402 20 6 1.3196 5.6233 0.0319 21 6 1.9768 4.2507 -0.1595 22 6 3.3288 4.4302 -0.8615 23 6 3.0740 5.1323 -2.2172 24 1 -0.3634 0.5599 0.8617 25 1 -0.3633 0.4664 -0.9158 26 1 -0.3633 -1.0262 0.0540 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.7263 -0.0240 3.0281 30 1 1.0980 1.4884 -1.8300 31 1 -0.1658 2.6103 0.5256 32 1 -0.7007 4.1824 -0.1152 33 1 -2.0758 2.2987 -0.8432 34 1 -1.3599 3.0714 -2.1302 35 1 1.2536 3.4718 -3.2006 36 1 -0.1763 4.3125 -2.5539 37 1 0.0677 6.4661 -1.5072 38 1 1.6765 7.2166 -1.3755 39 1 0.3511 5.5001 0.5164 40 1 1.9601 6.2518 0.6508 41 1 2.1174 3.7645 0.8058 42 1 3.9787 5.0544 -0.2482 43 1 3.7932 3.4561 -1.0144 44 1 3.4309 4.4906 -3.0229 45 1 3.6072 6.0826 -2.2457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:05 Heat of formation + Delta-G solvation = 18.314895 kcal Electronic energy + Delta-G solvation = -23341.361696 eV Core-core repulsion = 20393.578055 eV Total energy + Delta-G solvation = -2947.783641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.66245 -36.46291 -34.12846 -32.00867 -31.59366 -30.91246 -30.18530 -27.99693 -26.03861 -24.56755 -22.92683 -22.59360 -22.14409 -20.30158 -19.30344 -16.70983 -16.39004 -16.16868 -15.94336 -15.52187 -14.67727 -14.50543 -14.06978 -13.60758 -13.38313 -13.11377 -12.56527 -12.46620 -12.28807 -11.92635 -11.72460 -11.62862 -11.56151 -11.29243 -11.12501 -11.00299 -10.77931 -10.60625 -10.49538 -10.41140 -9.88971 -9.70792 -9.56855 -9.44395 -9.41265 -8.98147 -8.34326 -8.21558 -7.74931 -6.99771 -5.90074 -3.92558 3.33045 3.41842 3.45976 4.40373 4.48643 4.73002 4.99674 5.21708 5.37222 5.42770 5.47957 5.53660 5.60401 5.68549 5.72001 5.80382 5.87050 5.99829 6.06525 6.17557 6.24782 6.30394 6.36648 6.39492 6.44317 6.51468 6.66429 6.70588 6.79139 6.97698 7.11430 7.17091 7.24169 7.31732 7.38889 7.45628 7.53457 7.61727 7.66016 7.90759 8.05464 8.45463 8.63556 8.87924 9.15371 9.71613 11.14459 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.009085 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.157759 B = 3081.427428 C = 4078.315283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.134 4.134 3 C 0.220 3.780 4 H 0.015 0.985 5 C -0.481 4.481 6 H 0.065 0.935 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.664 5.664 14 C 0.104 3.896 15 C 0.030 3.970 16 N -0.841 5.841 17 C 0.068 3.932 18 N -0.531 5.531 19 C 0.055 3.945 20 C -0.155 4.155 21 C -0.069 4.069 22 C -0.143 4.143 23 C 0.056 3.944 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.023 0.977 27 H 0.033 0.967 28 H 0.093 0.907 29 H 0.256 0.744 30 H 0.331 0.669 31 H 0.079 0.921 32 H 0.018 0.982 33 H 0.335 0.665 34 H 0.332 0.668 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 8.346 -5.910 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.113 3.887 4 H 0.033 0.967 5 C -0.520 4.520 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.295 5.295 14 C 0.010 3.990 15 C -0.103 4.103 16 N -0.371 5.371 17 C -0.061 4.061 18 N -0.251 5.251 19 C -0.074 4.074 20 C -0.195 4.195 21 C -0.089 4.089 22 C -0.181 4.181 23 C -0.072 4.072 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.149 0.851 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.727 8.194 -6.363 11.850 hybrid contribution -0.466 0.052 1.826 1.885 sum -6.193 8.246 -4.537 11.266 Atomic orbital electron populations 1.22036 0.99026 0.98757 1.01397 1.21928 0.91979 1.01043 1.02378 1.19146 0.94947 0.89348 0.85305 0.96745 1.21382 0.91725 1.35581 1.03271 0.91657 1.24950 0.97429 0.96013 0.96310 1.69888 1.34131 1.40366 1.09359 0.86623 0.86568 0.77471 0.77833 1.19775 1.21488 1.21386 1.61011 1.45056 1.02733 1.20673 1.21423 0.90261 0.92895 0.94440 1.22745 0.94771 0.95990 0.96787 1.58695 1.17642 1.50945 1.09778 1.22298 0.96759 0.89774 0.97222 1.62686 1.04096 1.13426 1.44924 1.22115 0.99715 0.95902 0.89655 1.22397 1.00752 0.98107 0.98218 1.21076 0.94794 0.92948 1.00042 1.22596 0.96660 1.03532 0.95317 1.22433 0.87606 0.99226 0.97944 0.94857 0.91307 0.95755 0.94818 0.88860 0.93404 0.85078 0.90241 0.96388 0.85305 0.85386 0.89926 0.92236 0.91841 0.91435 0.92346 0.92210 0.89321 0.93778 0.87016 0.91013 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.70 37.16 0.32 -2.72 16 2 C -0.13 -3.13 5.14 -26.73 -0.14 -3.26 16 3 C 0.22 5.10 0.96 -68.87 -0.07 5.03 16 4 H 0.01 0.38 4.86 -51.93 -0.25 0.13 16 5 C -0.48 -12.46 7.33 -34.44 -0.25 -12.71 16 6 H 0.07 1.73 5.79 -52.49 -0.30 1.42 16 7 C 0.05 1.42 5.28 -17.82 -0.09 1.32 16 8 N -0.90 -25.11 11.29 55.43 0.63 -24.48 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.66 -13.03 5.08 -93.98 -0.48 -13.51 16 14 C 0.10 1.75 0.21 -131.33 -0.03 1.72 16 15 C 0.03 0.46 4.86 -3.82 -0.02 0.44 16 16 N -0.84 -10.97 6.97 -10.37 -0.07 -11.04 16 17 C 0.07 1.03 5.16 -3.60 -0.02 1.01 16 18 N -0.53 -7.92 5.22 -232.97 -1.22 -9.13 16 19 C 0.05 0.75 6.09 -3.74 -0.02 0.72 16 20 C -0.16 -2.33 5.43 -26.47 -0.14 -2.47 16 21 C -0.07 -1.24 1.86 -90.02 -0.17 -1.40 16 22 C -0.14 -2.59 5.53 -25.59 -0.14 -2.73 16 23 C 0.06 0.88 6.14 -2.87 -0.02 0.87 16 24 H 0.03 0.67 7.21 -51.93 -0.37 0.29 16 25 H 0.07 1.24 4.86 -51.93 -0.25 0.99 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.09 2.48 5.91 -51.93 -0.31 2.18 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.33 6.43 6.44 -39.29 -0.25 6.18 16 31 H 0.08 1.49 5.01 -51.93 -0.26 1.23 16 32 H 0.02 0.27 6.10 -51.93 -0.32 -0.05 16 33 H 0.34 3.90 9.08 -39.29 -0.36 3.54 16 34 H 0.33 3.86 6.95 -39.29 -0.27 3.58 16 35 H 0.08 1.33 7.86 -51.93 -0.41 0.92 16 36 H 0.06 0.81 5.96 -51.93 -0.31 0.50 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.85 6.30 -51.93 -0.33 0.52 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.94 6.27 -51.93 -0.33 1.62 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.11 2.38 4.39 -51.93 -0.23 2.16 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -26.28 308.57 -9.36 -35.64 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -7.07 Total: 15.81 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.79 Total: -14.18 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -1.14 Total: -58.16 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.28 -9.36 -35.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.957 kcal (2) G-P(sol) polarization free energy of solvation -26.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds