Wall clock time and date at job start Mon Mar 30 2020 01:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47136 * 2 1 4 4 H 1.08998 * 109.47472 * 52.90690 * 3 2 1 5 5 C 1.50698 * 109.47305 * 172.90839 * 3 2 1 6 6 H 1.08001 * 120.00185 * 119.99653 * 5 3 2 7 7 C 1.37885 * 119.99845 * 300.00213 * 5 3 2 8 8 N 1.31510 * 120.00029 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99905 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47274 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47379 * 119.99841 * 9 7 5 12 12 H 1.48503 * 109.46934 * 239.99598 * 9 7 5 13 13 N 1.46902 * 109.47140 * 292.90514 * 3 2 1 14 14 C 1.46899 * 111.00119 * 131.26942 * 13 3 2 15 15 C 1.53002 * 109.57514 * 293.35683 * 14 13 3 16 16 N 1.46898 * 109.47045 * 293.84738 * 15 14 13 17 17 C 1.53138 * 109.58156 * 173.09425 * 14 13 3 18 18 N 1.47185 * 109.22487 * 240.23050 * 17 14 13 19 19 C 1.46939 * 111.01549 * 297.89633 * 18 17 14 20 20 C 1.53127 * 109.35630 * 62.02799 * 19 18 17 21 21 C 1.53382 * 109.58145 * 53.61542 * 14 13 3 22 22 C 1.53395 * 108.59448 * 60.05235 * 21 14 13 23 23 C 1.46939 * 111.13059 * 61.91530 * 18 17 14 24 24 H 1.09004 * 109.47639 * 303.01440 * 1 2 3 25 25 H 1.09006 * 109.46806 * 63.01051 * 1 2 3 26 26 H 1.08996 * 109.47277 * 183.00947 * 1 2 3 27 27 H 1.09000 * 109.47181 * 239.99482 * 2 1 3 28 28 H 1.09000 * 109.46551 * 119.99686 * 2 1 3 29 29 H 0.96994 * 119.99985 * 180.02562 * 8 7 5 30 30 H 1.00895 * 111.00001 * 7.31713 * 13 3 2 31 31 H 1.09004 * 109.47531 * 53.85140 * 15 14 13 32 32 H 1.09000 * 109.46926 * 173.84861 * 15 14 13 33 33 H 1.00904 * 110.99790 * 174.00245 * 16 15 14 34 34 H 1.00898 * 111.00054 * 297.95528 * 16 15 14 35 35 H 1.09004 * 109.48429 * 0.15356 * 17 14 13 36 36 H 1.09004 * 109.49017 * 120.21316 * 17 14 13 37 37 H 1.09002 * 109.49194 * 302.06407 * 19 18 17 38 38 H 1.08999 * 109.50899 * 182.00711 * 19 18 17 39 39 H 1.08996 * 109.57984 * 240.24520 * 20 19 18 40 40 H 1.09002 * 109.68159 * 119.92464 * 20 19 18 41 41 H 1.09001 * 110.11323 * 299.41711 * 21 14 13 42 42 H 1.09003 * 109.57037 * 178.81424 * 22 21 14 43 43 H 1.08999 * 109.57828 * 299.19552 * 22 21 14 44 44 H 1.09006 * 109.49179 * 58.00509 * 23 18 17 45 45 H 1.08999 * 109.49231 * 178.05621 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5768 1.9916 0.8197 5 6 3.5367 1.4461 0.1754 6 1 4.1685 1.8813 -0.5848 7 6 4.0996 0.8937 1.3064 8 7 3.3303 0.3642 2.2323 9 14 5.9549 0.8976 1.5235 10 1 6.5895 1.5474 0.3486 11 1 6.3076 1.6482 2.7553 12 1 6.4427 -0.5002 1.6390 13 7 1.6950 2.0838 -1.2758 14 6 1.0711 3.3951 -1.0541 15 6 -0.2885 3.2081 -0.3776 16 7 -1.2035 2.5213 -1.2990 17 6 0.8826 4.1074 -2.3966 18 7 1.6340 5.3729 -2.3834 19 6 1.1278 6.2755 -1.3402 20 6 1.3196 5.6233 0.0319 21 6 1.9768 4.2507 -0.1595 22 6 3.3288 4.4302 -0.8615 23 6 3.0740 5.1323 -2.2172 24 1 -0.3634 0.5599 0.8617 25 1 -0.3633 0.4664 -0.9158 26 1 -0.3633 -1.0262 0.0540 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.7263 -0.0240 3.0281 30 1 1.0980 1.4884 -1.8300 31 1 -0.1658 2.6103 0.5256 32 1 -0.7007 4.1824 -0.1152 33 1 -2.0758 2.2987 -0.8432 34 1 -1.3599 3.0714 -2.1302 35 1 1.2536 3.4718 -3.2006 36 1 -0.1763 4.3125 -2.5539 37 1 0.0677 6.4661 -1.5072 38 1 1.6765 7.2166 -1.3755 39 1 0.3511 5.5001 0.5164 40 1 1.9601 6.2518 0.6508 41 1 2.1174 3.7645 0.8058 42 1 3.9787 5.0544 -0.2482 43 1 3.7932 3.4561 -1.0144 44 1 3.4309 4.4906 -3.0229 45 1 3.6072 6.0826 -2.2457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:05 Heat of formation + Delta-G solvation = -1.526124 kcal Electronic energy + Delta-G solvation = -23342.222067 eV Core-core repulsion = 20393.578055 eV Total energy + Delta-G solvation = -2948.644012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.00490 -38.02261 -35.66051 -33.75198 -33.08873 -32.35406 -31.50251 -29.54217 -27.87019 -25.84131 -24.65912 -23.93653 -23.52323 -21.78326 -20.99078 -18.40727 -17.83479 -17.65221 -17.32389 -16.89891 -16.48098 -15.87328 -15.36987 -15.09158 -15.03059 -14.70686 -14.13109 -13.83520 -13.68876 -13.46013 -13.29852 -13.09689 -12.91771 -12.81669 -12.74304 -12.58070 -12.48222 -12.29054 -12.09173 -11.76672 -11.66261 -11.35799 -11.23180 -11.11583 -10.99095 -10.68287 -10.31506 -9.48699 -9.06993 -8.62911 -7.96827 -6.05168 1.37430 1.41342 1.51083 2.46900 3.19429 3.27713 3.48946 3.74877 3.93561 4.10244 4.17439 4.26571 4.33225 4.40433 4.47226 4.50699 4.59053 4.61867 4.66148 4.74561 4.81829 4.90031 4.98353 5.01694 5.05278 5.11413 5.15369 5.27047 5.35370 5.38578 5.45393 5.50347 5.55175 5.69251 5.79645 5.92127 6.07105 6.18627 6.25341 6.33738 6.50998 6.68947 6.85247 7.11138 7.19912 7.62854 9.04828 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.009085 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.157759 B = 3081.427428 C = 4078.315283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.236 3.764 4 H -0.013 1.013 5 C -0.481 4.481 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.924 5.924 9 Si 0.939 3.061 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.664 5.664 14 C 0.104 3.896 15 C 0.042 3.958 16 N -0.840 5.840 17 C 0.076 3.924 18 N -0.526 5.526 19 C 0.058 3.942 20 C -0.149 4.149 21 C -0.070 4.070 22 C -0.142 4.142 23 C 0.064 3.936 24 H 0.023 0.977 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.027 0.973 28 H 0.057 0.943 29 H 0.253 0.747 30 H 0.333 0.667 31 H 0.044 0.956 32 H 0.033 0.967 33 H 0.347 0.653 34 H 0.346 0.654 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 10.063 -7.682 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.128 3.872 4 H 0.004 0.996 5 C -0.520 4.520 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.295 5.295 14 C 0.011 3.989 15 C -0.091 4.091 16 N -0.372 5.372 17 C -0.054 4.054 18 N -0.246 5.246 19 C -0.071 4.071 20 C -0.188 4.188 21 C -0.090 4.090 22 C -0.181 4.181 23 C -0.064 4.064 24 H 0.042 0.958 25 H 0.107 0.893 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.152 0.848 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.023 9.925 -8.158 14.642 hybrid contribution -0.065 -0.464 2.377 2.423 sum -7.088 9.461 -5.780 13.159 Atomic orbital electron populations 1.21861 0.96052 0.99584 1.01946 1.21800 0.94620 1.00455 1.00227 1.18775 0.93194 0.89227 0.86019 0.99567 1.21669 0.93357 1.34313 1.02680 0.92512 1.25582 1.00825 0.96294 0.96439 1.70023 1.35352 1.41501 1.09713 0.85785 0.82654 0.77221 0.77642 1.19283 1.21531 1.21367 1.60891 1.46099 1.03727 1.18756 1.21495 0.90498 0.91222 0.95725 1.22433 0.94665 0.96225 0.95734 1.58556 1.17995 1.50832 1.09838 1.22262 0.98260 0.89587 0.95244 1.62716 1.03369 1.13199 1.45275 1.22223 1.01325 0.95828 0.87684 1.22345 1.00659 0.96082 0.99715 1.20969 0.95523 0.94800 0.97720 1.22493 0.96550 1.01867 0.97171 1.22368 0.88645 0.99706 0.95705 0.95768 0.89315 0.94578 0.95404 0.92424 0.93766 0.84788 0.93765 0.94924 0.83956 0.83829 0.90672 0.89664 0.89658 0.89787 0.91745 0.92065 0.94347 0.94188 0.90598 0.91517 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.70 71.98 0.63 -4.73 16 2 C -0.13 -6.30 5.14 30.59 0.16 -6.14 16 3 C 0.24 11.34 0.96 44.17 0.04 11.39 16 4 H -0.01 -0.71 4.86 -2.39 -0.01 -0.72 16 5 C -0.48 -25.91 7.33 25.60 0.19 -25.72 16 6 H 0.06 3.12 5.79 -2.91 -0.02 3.10 16 7 C 0.01 0.29 5.28 84.66 0.45 0.74 16 8 N -0.92 -53.88 11.29 21.45 0.24 -53.64 16 9 Si 0.94 44.94 29.54 68.60 2.03 46.96 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 13 N -0.66 -26.18 5.08 -451.25 -2.29 -28.48 16 14 C 0.10 3.42 0.21 3.70 0.00 3.42 16 15 C 0.04 1.27 4.86 86.30 0.42 1.68 16 16 N -0.84 -19.67 6.97 -186.71 -1.30 -20.97 16 17 C 0.08 2.07 5.16 86.29 0.45 2.51 16 18 N -0.53 -13.97 5.22 -890.99 -4.65 -18.62 16 19 C 0.06 1.35 6.09 86.34 0.53 1.87 16 20 C -0.15 -4.18 5.43 30.77 0.17 -4.01 16 21 C -0.07 -2.53 1.86 -10.40 -0.02 -2.55 16 22 C -0.14 -5.19 5.53 31.33 0.17 -5.02 16 23 C 0.06 1.90 6.14 86.90 0.53 2.43 16 24 H 0.02 0.96 7.21 -2.39 -0.02 0.95 16 25 H 0.09 3.08 4.86 -2.38 -0.01 3.07 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 3.19 5.91 -2.39 -0.01 3.18 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.33 12.69 6.44 -89.70 -0.58 12.11 16 31 H 0.04 1.67 5.01 -2.38 -0.01 1.66 16 32 H 0.03 0.89 6.10 -2.39 -0.01 0.88 16 33 H 0.35 7.08 9.08 -89.69 -0.81 6.26 16 34 H 0.35 6.69 6.95 -89.70 -0.62 6.06 16 35 H 0.07 2.22 7.86 -2.38 -0.02 2.20 16 36 H 0.09 1.93 5.96 -2.38 -0.01 1.92 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.73 6.30 -2.39 -0.02 1.71 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.04 1.77 6.27 -2.39 -0.01 1.75 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 3.34 4.39 -2.39 -0.01 3.33 16 44 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -59.27 308.57 -3.26 -62.53 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -0.99 Total: 36.33 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 3.71 Total: -24.12 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -8.00 Total: -121.70 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -59.27 -3.26 -62.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.005 kcal (2) G-P(sol) polarization free energy of solvation -59.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds