Wall clock time and date at job start Mon Mar 30 2020 01:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 5 5 C 1.52997 * 109.47254 * 66.04707 * 4 2 1 6 6 N 1.46894 * 109.47515 * 179.97438 * 5 4 2 7 7 C 1.47660 * 111.00083 * 91.52484 * 6 5 4 8 8 C 1.53672 * 88.18048 * 137.79579 * 7 6 5 9 9 C 1.46579 * 111.00456 * 187.16684 * 6 5 4 10 10 C 1.53124 * 121.15498 * 95.73400 * 9 6 5 11 11 N 1.48126 * 85.89234 * 211.59583 * 10 9 6 12 12 C 1.46907 * 110.99787 * 137.03169 * 11 10 9 13 13 C 1.52997 * 109.47132 * 90.41564 * 12 11 10 14 14 C 1.50709 * 109.46781 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00017 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99654 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00170 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99940 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46828 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47359 * 119.99948 * 18 16 14 21 21 H 1.48503 * 109.47284 * 240.00381 * 18 16 14 22 22 C 1.48118 * 90.95361 * 24.05679 * 11 10 9 23 23 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 24 24 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 25 25 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 26 26 H 1.08998 * 109.47200 * 183.95269 * 3 2 1 27 27 H 1.08998 * 109.47707 * 303.95146 * 3 2 1 28 28 H 1.09001 * 109.47500 * 63.95378 * 3 2 1 29 29 H 1.09002 * 109.47043 * 186.04778 * 4 2 1 30 30 H 1.09001 * 109.47354 * 306.04839 * 4 2 1 31 31 H 1.09002 * 109.47153 * 300.00004 * 5 4 2 32 32 H 1.08998 * 109.47533 * 59.99633 * 5 4 2 33 33 H 1.08997 * 113.43997 * 252.62760 * 7 6 5 34 34 H 1.09005 * 113.43247 * 22.91237 * 7 6 5 35 35 H 1.08999 * 114.21341 * 88.31905 * 8 7 6 36 36 H 1.08992 * 114.21595 * 220.98046 * 8 7 6 37 37 H 1.09000 * 113.80293 * 325.83921 * 10 9 6 38 38 H 1.09000 * 113.80396 * 97.35322 * 10 9 6 39 39 H 1.08999 * 109.46757 * 210.42125 * 12 11 10 40 40 H 1.09000 * 109.46668 * 330.41889 * 12 11 10 41 41 H 1.08997 * 109.47331 * 299.99637 * 13 12 11 42 42 H 1.09000 * 109.47079 * 60.00576 * 13 12 11 43 43 H 0.97001 * 119.99824 * 180.02562 * 17 16 14 44 44 H 1.09001 * 113.80320 * 221.70036 * 22 11 10 45 45 H 1.08999 * 113.80629 * 90.19011 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 7 2.1584 -3.0087 2.1076 7 6 1.1588 -3.1035 3.1903 8 6 1.5569 -4.5778 3.3622 9 6 1.9776 -4.4484 1.9001 10 6 3.1016 -5.3127 1.3219 11 7 2.0207 -6.1317 0.7260 12 6 2.3396 -6.4955 -0.6611 13 6 3.0939 -7.8264 -0.6787 14 6 3.4205 -8.1999 -2.1018 15 1 3.1204 -7.5524 -2.9125 16 6 4.1024 -9.3681 -2.3688 17 7 4.4674 -10.1568 -1.3816 18 14 4.5066 -9.8314 -4.1327 19 1 3.9896 -8.7845 -5.0503 20 1 5.9789 -9.9437 -4.2901 21 1 3.8730 -11.1340 -4.4600 22 6 1.0894 -4.9808 0.7723 23 1 -0.3634 0.4512 0.9232 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0828 1.3433 -0.0708 27 1 1.5899 1.9164 -0.8524 28 1 1.7044 1.8724 0.9233 29 1 3.0797 -0.6611 1.1757 30 1 1.5611 -0.3872 2.0628 31 1 0.5472 -2.3475 0.9323 32 1 2.0658 -2.6214 0.0452 33 1 1.3977 -2.4862 4.0563 34 1 0.1333 -2.9677 2.8467 35 1 2.3845 -4.7398 4.0528 36 1 0.7166 -5.2511 3.5309 37 1 3.7191 -4.7970 0.5865 38 1 3.6859 -5.8378 2.0775 39 1 1.4165 -6.5933 -1.2324 40 1 2.9619 -5.7192 -1.1063 41 1 4.0170 -7.7285 -0.1075 42 1 2.4716 -8.6027 -0.2335 43 1 4.9474 -10.9785 -1.5695 44 1 0.0812 -5.2433 1.0929 45 1 1.1049 -4.3658 -0.1275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277944859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:43 Heat of formation + Delta-G solvation = 53.499383 kcal Electronic energy + Delta-G solvation = -20833.386895 eV Core-core repulsion = 17887.128968 eV Total energy + Delta-G solvation = -2946.257927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.43011 -38.91971 -37.98565 -35.38788 -32.84860 -32.21187 -28.52761 -28.32885 -28.09824 -27.29008 -25.37731 -24.21745 -23.18291 -21.89313 -21.74239 -19.00735 -18.59547 -17.46131 -17.03323 -16.82837 -16.55435 -16.23756 -15.96580 -15.87420 -15.25966 -14.95769 -14.64601 -14.20475 -14.09238 -13.72537 -13.56026 -13.28360 -13.08907 -12.89453 -12.81620 -12.68705 -12.61653 -12.47796 -12.43496 -12.32353 -12.00958 -11.73677 -11.51421 -11.49548 -11.36629 -10.88247 -10.58019 -9.90495 -9.67910 -9.34109 -8.21500 -6.33931 1.38991 1.39838 1.53243 2.38831 2.58041 3.03629 3.11407 3.21510 3.32536 3.52986 3.84824 4.00147 4.08769 4.12595 4.22536 4.25824 4.31362 4.39770 4.45241 4.49686 4.53657 4.58402 4.63182 4.64020 4.74843 4.77347 4.83514 4.89528 4.94807 4.98943 5.00961 5.02793 5.05153 5.20220 5.33773 5.36692 5.44679 5.72073 5.76947 5.97809 6.05581 6.06622 6.15323 6.26042 6.83076 7.35527 8.90954 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.021656 B = 0.003747 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.663014 B = 7470.677098 C = 8380.380198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.568 5.568 3 C 0.027 3.973 4 C 0.074 3.926 5 C 0.030 3.970 6 N -0.471 5.471 7 C 0.008 3.992 8 C -0.110 4.110 9 C 0.039 3.961 10 C 0.022 3.978 11 N -0.491 5.491 12 C 0.050 3.950 13 C 0.043 3.957 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.276 1.276 22 C 0.005 3.995 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.028 0.972 41 H -0.014 1.014 42 H -0.008 1.008 43 H 0.264 0.736 44 H 0.101 0.899 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 22.011 8.118 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.293 5.293 3 C -0.121 4.121 4 C -0.054 4.054 5 C -0.098 4.098 6 N -0.193 5.193 7 C -0.120 4.120 8 C -0.147 4.147 9 C -0.052 4.052 10 C -0.107 4.107 11 N -0.214 5.214 12 C -0.079 4.079 13 C 0.005 3.995 14 C -0.585 4.585 15 H 0.078 0.922 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.793 3.207 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.125 4.125 23 H 0.050 0.950 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.004 0.996 42 H 0.010 0.990 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.592 21.341 8.100 24.390 hybrid contribution -0.197 0.096 -0.980 1.004 sum -8.789 21.437 7.120 24.238 Atomic orbital electron populations 1.22465 0.86588 1.02460 1.01131 1.61895 1.08996 1.14954 1.43451 1.22390 1.00882 0.87740 1.01124 1.21827 1.00231 0.92184 0.91206 1.22530 0.98484 0.94267 0.94554 1.68575 1.39899 1.03765 1.07042 1.23851 0.95148 0.96711 0.96262 1.22884 1.02218 0.96968 0.92665 1.23826 0.95136 0.89361 0.96914 1.23800 0.94736 0.93475 0.98708 1.68480 1.07898 1.27794 1.17183 1.22474 0.98784 0.97573 0.89049 1.18776 0.93535 0.91981 0.95210 1.21660 1.36593 1.06561 0.93667 0.92229 1.26007 0.95439 0.96233 1.02103 1.70128 1.40114 1.13332 1.33590 0.85347 0.78005 0.78354 0.79013 1.18555 1.20238 1.20129 1.24157 0.98689 0.91915 0.97729 0.94962 0.90544 0.91537 0.91408 0.90404 0.95037 0.91083 0.94212 0.92602 0.92377 0.88290 0.90175 0.88284 0.89281 0.92404 0.89926 0.92080 0.95336 0.99559 0.98986 0.92684 0.88102 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.32 127.69 1.19 1.52 16 2 N -0.57 -10.61 5.02 -948.84 -4.76 -15.37 16 3 C 0.03 0.39 9.57 127.69 1.22 1.61 16 4 C 0.07 1.43 5.27 86.30 0.46 1.89 16 5 C 0.03 0.66 3.71 86.30 0.32 0.98 16 6 N -0.47 -10.78 6.35 -903.50 -5.74 -16.52 16 7 C 0.01 0.15 7.71 82.56 0.64 0.78 16 8 C -0.11 -2.27 8.22 30.72 0.25 -2.02 16 9 C 0.04 1.03 1.32 1.22 0.00 1.04 16 10 C 0.02 0.77 7.84 86.11 0.68 1.44 16 11 N -0.49 -18.62 6.16 -923.04 -5.68 -24.30 16 12 C 0.05 2.22 4.73 86.30 0.41 2.63 16 13 C 0.04 2.39 5.28 29.85 0.16 2.55 16 14 C -0.55 -32.37 9.11 25.60 0.23 -32.14 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 16 C 0.00 0.01 5.46 84.65 0.46 0.47 16 17 N -0.93 -58.47 13.29 21.45 0.28 -58.19 16 18 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 C 0.01 0.15 6.77 86.11 0.58 0.73 16 23 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.08 1.01 8.12 -2.38 -0.02 0.99 16 25 H 0.07 1.04 6.47 -2.39 -0.02 1.02 16 26 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 27 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 28 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 30 H 0.04 0.71 8.12 -2.39 -0.02 0.69 16 31 H 0.06 1.09 5.55 -2.39 -0.01 1.08 16 32 H 0.06 1.54 7.21 -2.39 -0.02 1.53 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.20 7.44 -2.38 -0.02 1.19 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 37 H 0.06 2.11 7.48 -2.39 -0.02 2.09 16 38 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.06 2.65 8.08 -2.39 -0.02 2.63 16 40 H 0.03 1.26 7.38 -2.39 -0.02 1.25 16 41 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 42 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.07 2.07 6.38 -2.39 -0.02 2.06 16 Total: -1.00 -67.85 351.84 -6.35 -74.20 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.92 Total: 11.37 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 6.60 Total: -18.53 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -15.90 Total: -114.38 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -67.85 -6.35 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277944859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.703 kcal (2) G-P(sol) polarization free energy of solvation -67.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds