Wall clock time and date at job start Mon Mar 30 2020 01:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99873 * 2 1 4 4 C 1.46898 * 111.00488 * 123.94883 * 2 1 3 5 5 C 1.52996 * 109.47317 * 169.99743 * 4 2 1 6 6 N 1.46900 * 109.46933 * 179.97438 * 5 4 2 7 7 C 1.47368 * 110.99867 * 170.00180 * 6 5 4 8 8 C 1.54004 * 108.19193 * 170.63778 * 7 6 5 9 9 H 1.09000 * 114.74352 * 154.38040 * 8 7 6 10 10 C 1.54267 * 110.80983 * 288.20644 * 8 7 6 11 11 C 1.54263 * 84.60793 * 79.43833 * 10 8 7 12 12 H 1.09000 * 116.04881 * 146.68048 * 11 10 8 13 13 C 1.48966 * 110.77416 * 293.23071 * 6 5 4 14 14 N 1.48570 * 84.68626 * 30.19272 * 11 10 8 15 15 C 1.46909 * 111.00088 * 216.64412 * 14 11 10 16 16 C 1.53002 * 109.46812 * 245.69172 * 15 14 11 17 17 C 1.50698 * 109.46832 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00261 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99624 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00130 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47263 * 59.99892 * 21 19 17 23 23 H 1.48498 * 109.46958 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46797 * 299.99967 * 21 19 17 25 25 H 1.09002 * 109.47038 * 296.04392 * 1 2 3 26 26 H 1.09000 * 109.47397 * 56.05115 * 1 2 3 27 27 H 1.09005 * 109.46601 * 176.04923 * 1 2 3 28 28 H 1.09005 * 109.47037 * 183.95697 * 3 2 1 29 29 H 1.09009 * 109.46691 * 303.95189 * 3 2 1 30 30 H 1.08995 * 109.47394 * 63.95422 * 3 2 1 31 31 H 1.09005 * 109.46465 * 50.00178 * 4 2 1 32 32 H 1.08992 * 109.47227 * 290.00556 * 4 2 1 33 33 H 1.09005 * 109.46998 * 60.00761 * 5 4 2 34 34 H 1.08992 * 109.47636 * 300.00562 * 5 4 2 35 35 H 1.09003 * 109.71614 * 50.96754 * 7 6 5 36 36 H 1.08999 * 109.71995 * 290.31456 * 7 6 5 37 37 H 1.09008 * 114.00528 * 193.35247 * 10 8 7 38 38 H 1.08997 * 114.01151 * 325.36652 * 10 8 7 39 39 H 1.09002 * 109.67446 * 69.99329 * 13 6 5 40 40 H 1.08992 * 110.57424 * 308.82290 * 13 6 5 41 41 H 1.08997 * 109.46571 * 5.68726 * 15 14 11 42 42 H 1.08996 * 109.47239 * 125.68550 * 15 14 11 43 43 H 1.09005 * 109.46632 * 299.99824 * 16 15 14 44 44 H 1.09002 * 109.47340 * 59.99594 * 16 15 14 45 45 H 0.97005 * 119.99631 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7658 1.1376 5 6 3.5045 -0.9552 0.9703 6 7 4.0310 -1.7206 2.1082 7 6 5.4273 -2.1275 1.8702 8 6 5.9881 -2.7110 3.1804 9 1 6.8041 -3.4219 3.0508 10 6 6.2193 -1.5967 4.2219 11 6 4.6982 -1.7011 4.4566 12 1 4.3573 -1.5170 5.4754 13 6 3.9229 -0.9345 3.3690 14 7 4.8767 -3.1258 4.0749 15 6 3.7282 -3.6105 3.2975 16 6 2.9889 -4.6858 4.0964 17 6 1.8105 -5.1825 3.2992 18 1 1.6092 -4.7726 2.3205 19 6 0.9899 -6.1610 3.8189 20 7 1.2359 -6.6613 5.0100 21 14 -0.4705 -6.7773 2.8304 22 1 0.0075 -7.3537 1.5480 23 1 -1.1881 -7.8209 3.6058 24 1 -1.3922 -5.6467 2.5519 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0828 1.3433 -0.0709 29 1 1.5897 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.5090 -1.7406 1.1756 32 1 1.7976 -0.2247 2.0627 33 1 3.9910 0.0195 0.9322 34 1 3.7024 -1.4964 0.0452 35 1 6.0170 -1.2609 1.5714 36 1 5.4612 -2.8842 1.0864 37 1 6.8221 -1.9059 5.0758 38 1 6.5401 -0.6477 3.7923 39 1 2.8755 -0.8459 3.6575 40 1 4.3547 0.0579 3.2399 41 1 3.0519 -2.7806 3.0929 42 1 4.0791 -4.0338 2.3564 43 1 3.6654 -5.5156 4.3011 44 1 2.6380 -4.2624 5.0375 45 1 0.6583 -7.3495 5.3757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277944959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:57 Heat of formation + Delta-G solvation = 97.089417 kcal Electronic energy + Delta-G solvation = -21892.890588 eV Core-core repulsion = 18948.522867 eV Total energy + Delta-G solvation = -2944.367721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46436 -37.75926 -34.96166 -33.30030 -30.96749 -29.99209 -29.20384 -27.67454 -27.13595 -24.94128 -23.45060 -22.58378 -22.29454 -20.67683 -19.93147 -17.99288 -16.66891 -16.02048 -15.71597 -15.50100 -15.09275 -14.86687 -14.47702 -14.32321 -14.13906 -13.51585 -13.24781 -12.94825 -12.47042 -12.26544 -12.08953 -12.02708 -11.80002 -11.71863 -11.56741 -11.29050 -11.20506 -10.93606 -10.81337 -10.76580 -10.52749 -10.23402 -10.00975 -9.45190 -9.17385 -8.85746 -8.62786 -8.39678 -8.16032 -7.23154 -5.83111 -3.83674 3.41144 3.45329 3.47818 3.57673 4.15071 4.47782 4.60838 4.61317 4.84775 4.93283 5.00854 5.07032 5.22178 5.27877 5.36463 5.43232 5.48087 5.51284 5.52172 5.53043 5.59830 5.68232 5.73424 5.74484 5.85727 5.90872 5.98412 6.03497 6.09667 6.21602 6.29056 6.33725 6.86473 6.91659 6.97316 7.06056 7.21015 7.25789 7.57575 7.69256 7.98159 8.18770 8.33720 8.67765 9.25761 9.78537 11.28549 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.007265 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.022620 B = 3853.286090 C = 5731.980706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.022 3.978 4 C 0.057 3.943 5 C 0.053 3.947 6 N -0.510 5.510 7 C 0.042 3.958 8 C 0.016 3.984 9 H 0.105 0.895 10 C -0.137 4.137 11 C 0.018 3.982 12 H 0.105 0.895 13 C 0.036 3.964 14 N -0.454 5.454 15 C 0.028 3.972 16 C 0.028 3.972 17 C -0.509 4.509 18 H 0.052 0.948 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.279 1.279 25 H 0.025 0.975 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.028 0.972 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.010 0.990 44 H 0.008 0.992 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 16.705 -7.444 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.127 4.127 4 C -0.071 4.071 5 C -0.075 4.075 6 N -0.235 5.235 7 C -0.087 4.087 8 C -0.094 4.094 9 H 0.123 0.877 10 C -0.174 4.174 11 C -0.092 4.092 12 H 0.123 0.877 13 C -0.092 4.092 14 N -0.175 5.175 15 C -0.100 4.100 16 C -0.010 4.010 17 C -0.548 4.548 18 H 0.070 0.930 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.715 3.285 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.205 1.205 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.907 15.366 -7.208 17.971 hybrid contribution -0.899 1.214 -0.526 1.600 sum 5.009 16.580 -7.735 18.969 Atomic orbital electron populations 1.22369 0.86951 1.02758 1.00180 1.61900 1.08130 1.13417 1.43723 1.22432 1.00819 0.89237 1.00184 1.22129 0.95185 0.99271 0.90537 1.22168 0.94654 0.95854 0.94815 1.64645 1.18461 1.38291 1.02073 1.22739 0.88032 0.99293 0.98643 1.23952 0.97419 0.96817 0.91252 0.87674 1.23692 0.96500 0.97650 0.99586 1.23944 0.94557 0.92044 0.98670 0.87725 1.22994 1.01651 0.94451 0.90154 1.69607 1.07121 1.13009 1.27784 1.23287 0.91968 0.99820 0.94875 1.19097 0.93842 0.93024 0.94994 1.21215 1.10813 1.20092 1.02660 0.92951 1.25003 0.97772 0.96769 0.94975 1.69984 1.38677 1.28492 1.16534 0.86750 0.83085 0.78454 0.80192 1.20384 1.21473 1.20458 0.95651 0.91589 0.90862 0.91446 0.91650 0.95862 0.88948 0.94762 0.95354 0.89986 0.94391 0.89774 0.89087 0.92333 0.89660 0.93958 0.88729 0.93408 0.97188 0.97325 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.57 60.06 0.57 0.86 16 2 N -0.55 -6.65 5.02 -251.26 -1.26 -7.92 16 3 C 0.02 0.22 9.32 60.07 0.56 0.78 16 4 C 0.06 0.77 4.91 -3.83 -0.02 0.75 16 5 C 0.05 0.69 4.85 -3.83 -0.02 0.67 16 6 N -0.51 -7.50 1.59 -231.14 -0.37 -7.87 16 7 C 0.04 0.57 4.66 -3.04 -0.01 0.56 16 8 C 0.02 0.23 5.33 -66.52 -0.35 -0.12 16 9 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 10 C -0.14 -1.77 7.54 -25.65 -0.19 -1.96 16 11 C 0.02 0.28 5.38 -66.52 -0.36 -0.08 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 13 C 0.04 0.50 4.22 -2.15 -0.01 0.50 16 14 N -0.45 -8.59 6.21 -232.11 -1.44 -10.03 16 15 C 0.03 0.61 3.68 -3.82 -0.01 0.60 16 16 C 0.03 0.78 5.30 -27.88 -0.15 0.64 16 17 C -0.51 -14.96 9.11 -34.44 -0.31 -15.27 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -28.15 13.29 55.43 0.74 -27.41 16 21 Si 0.89 22.38 29.54 -169.99 -5.02 17.35 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 28 H 0.07 0.64 6.47 -51.93 -0.34 0.31 16 29 H 0.06 0.56 8.12 -51.92 -0.42 0.14 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 32 H 0.03 0.47 6.77 -51.93 -0.35 0.11 16 33 H 0.03 0.34 6.47 -51.93 -0.34 0.00 16 34 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 35 H 0.04 0.45 8.04 -51.93 -0.42 0.03 16 36 H 0.08 1.17 7.96 -51.93 -0.41 0.76 16 37 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.06 0.66 8.01 -51.93 -0.42 0.24 16 39 H 0.09 1.26 6.81 -51.93 -0.35 0.91 16 40 H 0.04 0.52 8.00 -51.93 -0.42 0.10 16 41 H 0.10 2.02 4.41 -59.38 -0.26 1.76 16 42 H 0.05 1.08 6.79 -51.93 -0.35 0.73 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -32.03 339.58 -10.90 -42.93 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.26 Total: -1.61 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.40 Total: -10.56 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -2.33 Total: -53.23 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.03 -10.90 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277944959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.015 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds