Wall clock time and date at job start Mon Mar 30 2020 01:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99873 * 2 1 4 4 C 1.46898 * 111.00488 * 123.94883 * 2 1 3 5 5 C 1.52996 * 109.47317 * 169.99743 * 4 2 1 6 6 N 1.46900 * 109.46933 * 179.97438 * 5 4 2 7 7 C 1.47368 * 110.99867 * 170.00180 * 6 5 4 8 8 C 1.54004 * 108.19193 * 170.63778 * 7 6 5 9 9 H 1.09000 * 114.74352 * 154.38040 * 8 7 6 10 10 C 1.54267 * 110.80983 * 288.20644 * 8 7 6 11 11 C 1.54263 * 84.60793 * 79.43833 * 10 8 7 12 12 H 1.09000 * 116.04881 * 146.68048 * 11 10 8 13 13 C 1.48966 * 110.77416 * 293.23071 * 6 5 4 14 14 N 1.48570 * 84.68626 * 30.19272 * 11 10 8 15 15 C 1.46909 * 111.00088 * 216.64412 * 14 11 10 16 16 C 1.53002 * 109.46812 * 245.69172 * 15 14 11 17 17 C 1.50698 * 109.46832 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00261 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99624 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00130 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47263 * 59.99892 * 21 19 17 23 23 H 1.48498 * 109.46958 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46797 * 299.99967 * 21 19 17 25 25 H 1.09002 * 109.47038 * 296.04392 * 1 2 3 26 26 H 1.09000 * 109.47397 * 56.05115 * 1 2 3 27 27 H 1.09005 * 109.46601 * 176.04923 * 1 2 3 28 28 H 1.09005 * 109.47037 * 183.95697 * 3 2 1 29 29 H 1.09009 * 109.46691 * 303.95189 * 3 2 1 30 30 H 1.08995 * 109.47394 * 63.95422 * 3 2 1 31 31 H 1.09005 * 109.46465 * 50.00178 * 4 2 1 32 32 H 1.08992 * 109.47227 * 290.00556 * 4 2 1 33 33 H 1.09005 * 109.46998 * 60.00761 * 5 4 2 34 34 H 1.08992 * 109.47636 * 300.00562 * 5 4 2 35 35 H 1.09003 * 109.71614 * 50.96754 * 7 6 5 36 36 H 1.08999 * 109.71995 * 290.31456 * 7 6 5 37 37 H 1.09008 * 114.00528 * 193.35247 * 10 8 7 38 38 H 1.08997 * 114.01151 * 325.36652 * 10 8 7 39 39 H 1.09002 * 109.67446 * 69.99329 * 13 6 5 40 40 H 1.08992 * 110.57424 * 308.82290 * 13 6 5 41 41 H 1.08997 * 109.46571 * 5.68726 * 15 14 11 42 42 H 1.08996 * 109.47239 * 125.68550 * 15 14 11 43 43 H 1.09005 * 109.46632 * 299.99824 * 16 15 14 44 44 H 1.09002 * 109.47340 * 59.99594 * 16 15 14 45 45 H 0.97005 * 119.99631 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7658 1.1376 5 6 3.5045 -0.9552 0.9703 6 7 4.0310 -1.7206 2.1082 7 6 5.4273 -2.1275 1.8702 8 6 5.9881 -2.7110 3.1804 9 1 6.8041 -3.4219 3.0508 10 6 6.2193 -1.5967 4.2219 11 6 4.6982 -1.7011 4.4566 12 1 4.3573 -1.5170 5.4754 13 6 3.9229 -0.9345 3.3690 14 7 4.8767 -3.1258 4.0749 15 6 3.7282 -3.6105 3.2975 16 6 2.9889 -4.6858 4.0964 17 6 1.8105 -5.1825 3.2992 18 1 1.6092 -4.7726 2.3205 19 6 0.9899 -6.1610 3.8189 20 7 1.2359 -6.6613 5.0100 21 14 -0.4705 -6.7773 2.8304 22 1 0.0075 -7.3537 1.5480 23 1 -1.1881 -7.8209 3.6058 24 1 -1.3922 -5.6467 2.5519 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0828 1.3433 -0.0709 29 1 1.5897 1.9163 -0.8525 30 1 1.7044 1.8724 0.9232 31 1 1.5090 -1.7406 1.1756 32 1 1.7976 -0.2247 2.0627 33 1 3.9910 0.0195 0.9322 34 1 3.7024 -1.4964 0.0452 35 1 6.0170 -1.2609 1.5714 36 1 5.4612 -2.8842 1.0864 37 1 6.8221 -1.9059 5.0758 38 1 6.5401 -0.6477 3.7923 39 1 2.8755 -0.8459 3.6575 40 1 4.3547 0.0579 3.2399 41 1 3.0519 -2.7806 3.0929 42 1 4.0791 -4.0338 2.3564 43 1 3.6654 -5.5156 4.3011 44 1 2.6380 -4.2624 5.0375 45 1 0.6583 -7.3495 5.3757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277944959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:56 Heat of formation + Delta-G solvation = 73.801221 kcal Electronic energy + Delta-G solvation = -21893.900439 eV Core-core repulsion = 18948.522867 eV Total energy + Delta-G solvation = -2945.377573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.69931 -38.72623 -36.06504 -35.48019 -32.92067 -31.10635 -30.25474 -28.98359 -28.48409 -26.00181 -25.42579 -23.67768 -23.35518 -22.10036 -21.38809 -19.29249 -18.29102 -17.70465 -16.93616 -16.63895 -16.42713 -16.16223 -15.78882 -15.68623 -15.40610 -14.61309 -14.40480 -14.18174 -14.04558 -13.81647 -13.29171 -13.18403 -13.17225 -13.04004 -12.70378 -12.65686 -12.61077 -12.45843 -12.27498 -12.11730 -11.94777 -11.72735 -11.40698 -11.30849 -11.05838 -10.82149 -10.48438 -9.85648 -9.34368 -8.56806 -8.14114 -6.24774 1.38050 1.42370 1.50117 2.42272 2.54815 3.11391 3.17827 3.37199 3.49276 3.73077 3.85360 3.99853 4.14250 4.25547 4.26794 4.30887 4.45214 4.50400 4.51445 4.53920 4.59071 4.66793 4.69696 4.81571 4.90264 4.91552 4.96240 4.98320 4.99581 5.02123 5.06704 5.16035 5.31108 5.40527 5.51835 5.63568 5.85616 5.93228 5.95957 6.05122 6.13057 6.16440 6.28574 6.50958 6.94357 7.43688 8.98225 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.007265 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.022620 B = 3853.286090 C = 5731.980706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.022 3.978 4 C 0.063 3.937 5 C 0.065 3.935 6 N -0.539 5.539 7 C 0.048 3.952 8 C 0.013 3.987 9 H 0.109 0.891 10 C -0.112 4.112 11 C 0.009 3.991 12 H 0.099 0.901 13 C 0.044 3.956 14 N -0.494 5.494 15 C 0.056 3.944 16 C 0.035 3.965 17 C -0.529 4.529 18 H 0.058 0.942 19 C -0.004 4.004 20 N -0.937 5.937 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.283 1.283 24 H -0.265 1.265 25 H 0.024 0.976 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.036 0.964 43 H -0.032 1.032 44 H -0.026 1.026 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 18.870 -9.221 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.282 5.282 3 C -0.125 4.125 4 C -0.065 4.065 5 C -0.063 4.063 6 N -0.265 5.265 7 C -0.080 4.080 8 C -0.097 4.097 9 H 0.127 0.873 10 C -0.149 4.149 11 C -0.101 4.101 12 H 0.117 0.883 13 C -0.084 4.084 14 N -0.216 5.216 15 C -0.072 4.072 16 C -0.002 4.002 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.200 4.200 20 N -0.578 5.578 21 Si 0.788 3.212 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.190 1.190 25 H 0.043 0.957 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.055 0.945 43 H -0.013 1.013 44 H -0.008 1.008 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.303 17.555 -8.997 20.709 hybrid contribution -0.980 0.549 0.070 1.126 sum 5.323 18.104 -8.927 20.875 Atomic orbital electron populations 1.22398 0.86573 1.02321 1.01040 1.61918 1.08662 1.14810 1.42824 1.22490 1.01237 0.87871 1.00949 1.21970 0.95572 0.97833 0.91133 1.22047 0.94034 0.96506 0.93709 1.64317 1.19535 1.39703 1.02916 1.22677 0.87710 1.00145 0.97512 1.24121 0.95876 0.97645 0.92068 0.87272 1.23547 0.94297 0.98188 0.98873 1.24097 0.97053 0.89936 0.98966 0.88335 1.22895 1.00782 0.95418 0.89276 1.69476 1.07070 1.16039 1.29049 1.22901 0.93103 0.97922 0.93273 1.19026 0.93506 0.93376 0.94332 1.21587 1.11555 1.20542 1.03039 0.92397 1.26004 1.01132 0.96814 0.96086 1.70144 1.40132 1.29077 1.18469 0.85537 0.78932 0.78167 0.78609 1.19249 1.20836 1.18997 0.95691 0.89609 0.92191 0.90753 0.90157 0.95676 0.92317 0.95086 0.93135 0.90494 0.91351 0.90482 0.88746 0.89130 0.91155 0.90974 0.87991 0.94499 1.01326 1.00771 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.57 127.69 1.22 1.74 16 2 N -0.56 -12.67 5.02 -948.83 -4.76 -17.44 16 3 C 0.02 0.38 9.32 127.69 1.19 1.57 16 4 C 0.06 1.67 4.91 86.30 0.42 2.09 16 5 C 0.06 1.55 4.85 86.30 0.42 1.97 16 6 N -0.54 -15.10 1.59 -885.20 -1.41 -16.50 16 7 C 0.05 1.20 4.66 86.55 0.40 1.61 16 8 C 0.01 0.35 5.33 44.76 0.24 0.59 16 9 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 10 C -0.11 -2.57 7.54 31.54 0.24 -2.34 16 11 C 0.01 0.28 5.38 44.76 0.24 0.52 16 12 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 13 C 0.04 1.17 4.22 86.24 0.36 1.53 16 14 N -0.49 -18.94 6.21 -888.26 -5.52 -24.46 16 15 C 0.06 2.55 3.68 86.30 0.32 2.86 16 16 C 0.04 2.08 5.30 29.85 0.16 2.24 16 17 C -0.53 -32.17 9.11 25.60 0.23 -31.93 16 18 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 19 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 20 N -0.94 -60.77 13.29 21.45 0.28 -60.49 16 21 Si 0.96 46.52 29.54 68.60 2.03 48.54 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 27 H 0.06 1.39 8.12 -2.38 -0.02 1.37 16 28 H 0.07 1.16 6.47 -2.38 -0.02 1.14 16 29 H 0.08 1.13 8.12 -2.38 -0.02 1.11 16 30 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 1.92 8.06 -2.38 -0.02 1.90 16 32 H 0.03 0.82 6.77 -2.39 -0.02 0.81 16 33 H 0.05 1.00 6.47 -2.38 -0.02 0.99 16 34 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 35 H 0.07 1.32 8.04 -2.39 -0.02 1.31 16 36 H 0.08 2.03 7.96 -2.39 -0.02 2.01 16 37 H 0.09 2.13 8.14 -2.38 -0.02 2.12 16 38 H 0.09 1.58 8.01 -2.39 -0.02 1.56 16 39 H 0.07 2.05 6.81 -2.39 -0.02 2.03 16 40 H 0.07 1.48 8.00 -2.39 -0.02 1.46 16 41 H 0.10 4.48 4.41 -17.10 -0.08 4.40 16 42 H 0.04 1.71 6.79 -2.39 -0.02 1.69 16 43 H -0.03 -2.08 8.14 -2.38 -0.02 -2.10 16 44 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 45 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 Total: -1.00 -72.14 339.58 -2.60 -74.73 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.86 Total: 12.90 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 5.91 Total: -17.29 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -11.40 Total: -118.88 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -72.14 -2.60 -74.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277944959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.534 kcal (2) G-P(sol) polarization free energy of solvation -72.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds