Wall clock time and date at job start Mon Mar 30 2020 01:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47004 * 2 1 4 4 C 1.53001 * 109.47004 * 179.97438 * 3 2 1 5 5 C 1.53116 * 109.52134 * 175.00035 * 4 3 2 6 6 C 1.53038 * 109.27745 * 177.62139 * 5 4 3 7 7 N 1.46846 * 109.52445 * 300.82190 * 6 5 4 8 8 C 1.46904 * 111.00155 * 185.84333 * 7 6 5 9 9 C 1.53000 * 109.47548 * 86.77464 * 8 7 6 10 10 C 1.53001 * 109.46799 * 54.59172 * 9 8 7 11 11 C 1.52997 * 109.47168 * 294.59334 * 9 8 7 12 12 C 1.52996 * 109.47116 * 174.58732 * 9 8 7 13 13 C 1.50700 * 109.47003 * 180.02562 * 12 9 8 14 14 H 1.07997 * 120.00312 * 359.97438 * 13 12 9 15 15 C 1.37879 * 119.99989 * 180.02562 * 13 12 9 16 16 N 1.31515 * 119.99978 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99951 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47250 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47240 * 120.00095 * 17 15 13 20 20 H 1.48507 * 109.47423 * 240.00065 * 17 15 13 21 21 C 1.46846 * 111.19945 * 61.74066 * 7 6 5 22 22 C 1.53038 * 109.52175 * 298.25718 * 21 7 6 23 23 H 1.09000 * 109.46797 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47177 * 300.00502 * 1 2 3 25 25 H 1.09000 * 109.46802 * 59.99863 * 1 2 3 26 26 H 1.08996 * 109.47375 * 240.00014 * 2 1 3 27 27 H 1.09002 * 109.47379 * 119.99658 * 2 1 3 28 28 H 1.08996 * 109.47043 * 59.99811 * 3 2 1 29 29 H 1.08994 * 109.47029 * 299.99839 * 3 2 1 30 30 H 1.08998 * 109.52268 * 54.87106 * 4 3 2 31 31 H 1.08998 * 109.50609 * 57.68176 * 5 4 3 32 32 H 1.09000 * 109.50304 * 297.56262 * 5 4 3 33 33 H 1.08998 * 109.46498 * 180.80422 * 6 5 4 34 34 H 1.09007 * 109.45420 * 60.82959 * 6 5 4 35 35 H 1.08996 * 109.46819 * 326.77279 * 8 7 6 36 36 H 1.09003 * 109.46799 * 206.77763 * 8 7 6 37 37 H 1.08998 * 109.46864 * 185.51781 * 10 9 8 38 38 H 1.09003 * 109.47013 * 305.51317 * 10 9 8 39 39 H 1.08997 * 109.47353 * 65.51408 * 10 9 8 40 40 H 1.09002 * 109.47276 * 313.21416 * 11 9 8 41 41 H 1.09000 * 109.47701 * 73.21208 * 11 9 8 42 42 H 1.08996 * 109.47112 * 193.21377 * 11 9 8 43 43 H 1.08999 * 109.46553 * 60.00293 * 12 9 8 44 44 H 1.08992 * 109.47391 * 300.00613 * 12 9 8 45 45 H 0.97000 * 120.00083 * 180.02562 * 16 15 13 46 46 H 1.08994 * 109.46086 * 58.27835 * 21 7 6 47 47 H 1.09003 * 109.46105 * 178.24803 * 21 7 6 48 48 H 1.08996 * 109.50291 * 299.24025 * 22 21 7 49 49 H 1.08996 * 109.49914 * 179.11845 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0817 2.8802 -0.1251 6 6 5.6109 2.8794 -0.0642 7 7 6.0510 2.2937 1.2084 8 6 7.5080 2.4024 1.3620 9 6 7.8555 3.7547 1.9877 10 6 7.0816 3.9248 3.2966 11 6 7.4745 4.8772 1.0204 12 6 9.3576 3.8142 2.2720 13 6 9.6997 5.1459 2.8888 14 1 8.9235 5.8769 3.0605 15 6 11.0040 5.4315 3.2331 16 7 11.9495 4.5420 3.0226 17 14 11.4281 7.0825 3.9970 18 1 10.1948 7.8993 4.1270 19 1 12.0231 6.8680 5.3406 20 1 12.4037 7.7926 3.1313 21 6 5.6116 0.8979 1.3308 22 6 4.0824 0.8396 1.3116 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9564 -0.8900 30 1 3.9346 0.8513 -0.8393 31 1 3.6853 3.4806 0.6937 32 1 3.7556 3.3006 -1.0764 33 1 5.9779 3.9030 -0.1391 34 1 6.0068 2.2901 -0.8914 35 1 7.9834 2.3214 0.3846 36 1 7.8660 1.6005 2.0078 37 1 7.2527 4.9260 3.6922 38 1 6.0169 3.7850 3.1100 39 1 7.4240 3.1849 4.0200 40 1 7.8348 4.6334 0.0210 41 1 6.3902 4.9861 0.9991 42 1 7.9271 5.8117 1.3519 43 1 9.9088 3.6929 1.3395 44 1 9.6290 3.0145 2.9611 45 1 12.8670 4.7427 3.2651 46 1 6.0077 0.3181 0.4972 47 1 5.9791 0.4824 2.2691 48 1 3.6860 1.4079 2.1530 49 1 3.7569 -0.1979 1.3867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319947824.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:41 Heat of formation + Delta-G solvation = -38.290796 kcal Electronic energy + Delta-G solvation = -21565.310341 eV Core-core repulsion = 18718.612437 eV Total energy + Delta-G solvation = -2846.697904 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.39577 -37.01076 -34.95483 -32.61217 -31.73427 -30.72235 -27.79686 -26.84813 -26.28948 -25.06481 -23.13296 -22.86554 -21.87117 -20.73774 -19.58326 -17.81901 -16.16357 -15.71671 -15.31855 -14.86751 -14.54720 -14.42218 -14.24599 -13.74314 -13.53146 -13.25725 -12.84467 -12.68479 -12.44267 -12.34098 -11.98662 -11.93733 -11.69091 -11.44860 -11.38681 -11.08165 -10.92784 -10.85004 -10.72886 -10.67002 -10.56108 -10.41001 -10.23227 -10.17752 -10.10889 -9.75052 -9.55032 -8.88170 -8.78053 -8.28016 -7.83761 -5.92566 -3.92047 3.34779 3.42554 3.46394 4.24437 4.52775 4.57367 4.68364 4.79751 4.96416 5.09364 5.18417 5.33702 5.43221 5.43329 5.50926 5.54650 5.62874 5.65849 5.69266 5.72942 5.74277 5.83213 5.92962 5.96089 6.01809 6.06155 6.10422 6.15526 6.15980 6.24722 6.25307 6.34751 6.43428 6.49429 6.63487 6.79446 6.88352 6.94309 7.30914 7.33747 7.35945 7.52590 7.58938 7.76486 7.92318 8.08591 8.53901 9.13808 9.70445 11.19229 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.047971 B = 0.003402 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.545555 B = 8228.015223 C = 8358.006744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.088 4.088 5 C -0.110 4.110 6 C 0.040 3.960 7 N -0.529 5.529 8 C 0.065 3.935 9 C -0.051 4.051 10 C -0.113 4.113 11 C -0.132 4.132 12 C 0.032 3.968 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.053 3.947 16 N -0.899 5.899 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.055 3.945 22 C -0.109 4.109 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.023 0.977 35 H 0.031 0.969 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.034 0.966 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.011 0.989 44 H 0.013 0.987 45 H 0.257 0.743 46 H 0.024 0.976 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.278 -7.953 -6.638 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.107 4.107 5 C -0.148 4.148 6 C -0.088 4.088 7 N -0.253 5.253 8 C -0.062 4.062 9 C -0.051 4.051 10 C -0.171 4.171 11 C -0.189 4.189 12 C -0.006 4.006 13 C -0.541 4.541 14 H 0.078 0.922 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.212 1.212 21 C -0.074 4.074 22 C -0.147 4.147 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.030 0.970 44 H 0.032 0.968 45 H 0.067 0.933 46 H 0.042 0.958 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.314 -7.719 -6.243 21.716 hybrid contribution 0.895 0.316 -0.275 0.988 sum -18.419 -7.403 -6.518 20.894 Atomic orbital electron populations 1.21781 0.96200 1.01333 1.01686 1.21582 0.95491 0.97313 1.01987 1.21643 0.95091 0.96444 1.01872 1.21219 0.94658 0.96860 0.97951 1.21628 0.95460 0.96195 1.01496 1.22508 0.94997 1.01535 0.89745 1.61912 1.13845 1.16342 1.33188 1.22320 0.85266 0.99561 0.99027 1.20544 0.98407 0.91530 0.94649 1.21565 0.98455 1.00796 0.96267 1.21969 0.98806 1.00247 0.97836 1.19149 0.88001 0.97024 0.96384 1.21284 0.92851 1.00670 1.39321 0.92221 1.25024 0.96755 0.96672 0.96262 1.69981 1.00767 1.34369 1.48756 0.86617 0.78370 0.84555 0.78951 1.19765 1.21201 1.21232 1.22107 0.95306 0.89612 1.00332 1.21658 0.95071 1.00213 0.97739 0.93026 0.92787 0.92953 0.92341 0.91779 0.91925 0.92294 0.91934 0.91182 0.92206 0.88753 0.95920 0.95051 0.91924 0.93219 0.93398 0.94505 0.94656 0.93881 0.91654 0.97038 0.96822 0.93287 0.95774 0.91051 0.91190 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -1.00 5.70 -26.73 -0.15 -1.15 16 3 C -0.11 -0.98 4.69 -26.73 -0.13 -1.11 16 4 C -0.09 -0.90 2.25 -90.50 -0.20 -1.10 16 5 C -0.11 -1.25 5.38 -26.65 -0.14 -1.39 16 6 C 0.04 0.55 4.93 -3.83 -0.02 0.53 16 7 N -0.53 -7.94 3.40 -234.67 -0.80 -8.74 16 8 C 0.07 1.17 4.24 -3.82 -0.02 1.15 16 9 C -0.05 -1.03 0.61 -154.51 -0.09 -1.13 16 10 C -0.11 -2.25 7.95 37.16 0.30 -1.96 16 11 C -0.13 -2.52 6.87 37.16 0.26 -2.27 16 12 C 0.03 0.82 4.04 -27.88 -0.11 0.70 16 13 C -0.50 -13.91 7.53 -34.44 -0.26 -14.17 16 14 H 0.06 1.62 5.78 -52.49 -0.30 1.31 16 15 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 16 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C 0.05 0.71 5.36 -3.83 -0.02 0.69 16 22 C -0.11 -1.18 5.08 -26.65 -0.14 -1.32 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.51 6.64 -51.93 -0.34 0.17 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.38 4.16 -51.93 -0.22 1.16 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.03 0.57 7.77 -51.93 -0.40 0.17 16 36 H 0.06 1.13 7.62 -51.93 -0.40 0.74 16 37 H 0.05 1.04 6.81 -51.93 -0.35 0.69 16 38 H 0.05 0.87 7.27 -51.93 -0.38 0.49 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.65 7.68 -51.93 -0.40 0.25 16 41 H 0.04 0.73 6.29 -51.93 -0.33 0.41 16 42 H 0.06 1.38 6.30 -51.93 -0.33 1.05 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.59 6.71 -51.93 -0.35 0.24 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -28.84 358.88 -9.81 -38.65 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -9.68 Total: -3.89 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -0.46 Total: -21.81 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.06 Total: -35.15 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.84 -9.81 -38.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319947824.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.362 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds