Wall clock time and date at job start Mon Mar 30 2020 01:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47245 * 2 1 4 4 C 1.52998 * 109.52759 * 298.11941 * 3 2 1 5 5 C 1.53001 * 109.46751 * 304.54170 * 4 3 2 6 6 C 1.53120 * 109.52441 * 58.24795 * 3 2 1 7 7 C 1.53033 * 109.28128 * 177.55937 * 6 3 2 8 8 N 1.46843 * 109.52022 * 300.81654 * 7 6 3 9 9 C 1.46906 * 111.00114 * 185.83823 * 8 7 6 10 10 C 1.52998 * 109.46947 * 75.36941 * 9 8 7 11 11 H 1.08998 * 109.47099 * 305.76353 * 10 9 8 12 12 C 1.53000 * 109.47020 * 65.76243 * 10 9 8 13 13 C 1.53002 * 109.47442 * 185.76304 * 10 9 8 14 14 C 1.50694 * 109.47512 * 174.99875 * 13 10 9 15 15 H 1.08003 * 119.99702 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00059 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00058 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99972 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46880 * 90.00262 * 18 16 14 20 20 H 1.48501 * 109.47348 * 210.00368 * 18 16 14 21 21 H 1.48502 * 109.47011 * 330.00344 * 18 16 14 22 22 C 1.46846 * 111.19911 * 61.74579 * 8 7 6 23 23 C 1.53043 * 109.52148 * 298.25453 * 22 8 7 24 24 H 1.08997 * 109.47145 * 183.53271 * 1 2 3 25 25 H 1.09006 * 109.47060 * 303.52763 * 1 2 3 26 26 H 1.08999 * 109.47286 * 63.53004 * 1 2 3 27 27 H 1.09000 * 109.47029 * 239.99714 * 2 1 3 28 28 H 1.08999 * 109.46760 * 120.00382 * 2 1 3 29 29 H 1.08999 * 109.47030 * 64.53182 * 4 3 2 30 30 H 1.08992 * 109.47427 * 184.53475 * 4 3 2 31 31 H 1.08994 * 109.47468 * 65.57664 * 5 4 3 32 32 H 1.09000 * 109.47046 * 185.57420 * 5 4 3 33 33 H 1.09001 * 109.46896 * 305.57272 * 5 4 3 34 34 H 1.09007 * 109.50433 * 57.61049 * 6 3 2 35 35 H 1.09007 * 109.53502 * 297.51851 * 6 3 2 36 36 H 1.09007 * 109.46149 * 180.80306 * 7 6 3 37 37 H 1.09000 * 109.45361 * 60.83022 * 7 6 3 38 38 H 1.09003 * 109.47074 * 315.37648 * 9 8 7 39 39 H 1.08999 * 109.47545 * 195.37169 * 9 8 7 40 40 H 1.08998 * 109.47220 * 305.02335 * 12 10 9 41 41 H 1.09002 * 109.46995 * 65.02409 * 12 10 9 42 42 H 1.09001 * 109.47093 * 185.02091 * 12 10 9 43 43 H 1.09004 * 109.46531 * 295.00378 * 13 10 9 44 44 H 1.09004 * 109.46963 * 54.99970 * 13 10 9 45 45 H 0.96993 * 119.99900 * 179.97438 * 17 16 14 46 46 H 1.08999 * 109.46273 * 58.26980 * 22 8 7 47 47 H 1.08997 * 109.46753 * 178.24021 * 22 8 7 48 48 H 1.08992 * 109.50101 * 299.23977 * 23 22 8 49 49 H 1.09004 * 109.53245 * 179.13783 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5698 2.1511 -1.2718 5 6 2.0226 1.3541 -2.4968 6 6 1.4946 2.1780 1.2272 7 6 2.0566 3.6012 1.2544 8 7 3.5233 3.5486 1.3048 9 6 4.0928 4.8925 1.4715 10 6 3.9019 5.3514 2.9185 11 1 2.8480 5.2782 3.1868 12 6 4.7282 4.4613 3.8490 13 6 4.3641 6.8032 3.0583 14 6 4.0631 7.2944 4.4508 15 1 3.5898 6.6367 5.1648 16 6 4.3927 8.5831 4.8136 17 7 4.9695 9.3838 3.9442 18 14 4.0202 9.1917 6.5399 19 1 5.1794 8.9109 7.4246 20 1 3.7668 10.6545 6.5052 21 1 2.8182 8.4934 7.0623 22 6 4.0723 2.8885 0.1135 23 6 3.5703 1.4440 0.0522 24 1 -0.3633 -1.0257 0.0633 25 1 -0.3633 0.5677 0.8567 26 1 -0.3634 0.4581 -0.9199 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4821 2.2227 -1.2668 30 1 1.9996 3.1520 -1.3101 31 1 1.5154 0.3895 -2.5106 32 1 1.7748 1.9078 -3.4024 33 1 3.1003 1.1974 -2.4502 34 1 1.7964 1.6501 2.1319 35 1 0.4065 2.2175 1.1747 36 1 1.6814 4.1231 2.1348 37 1 1.7429 4.1326 0.3559 38 1 3.5875 5.5870 0.8004 39 1 5.1567 4.8681 1.2354 40 1 4.4611 3.4174 3.6850 41 1 5.7886 4.6023 3.6397 42 1 4.5235 4.7302 4.8853 43 1 5.4372 6.8620 2.8763 44 1 3.8380 7.4235 2.3326 45 1 5.2010 10.2905 4.1993 46 1 3.7491 3.4235 -0.7795 47 1 5.1610 2.8927 0.1651 48 1 3.9048 0.9047 0.9383 49 1 3.9654 0.9585 -0.8402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474454173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:27 Heat of formation + Delta-G solvation = -37.960731 kcal Electronic energy + Delta-G solvation = -21787.627033 eV Core-core repulsion = 18940.943441 eV Total energy + Delta-G solvation = -2846.683591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12650 -36.83292 -34.31699 -32.14851 -31.64924 -30.48057 -30.09148 -26.84401 -25.86671 -24.12715 -24.04658 -22.76296 -22.25670 -20.72061 -18.76595 -17.82410 -16.41529 -15.98342 -15.31174 -15.13294 -14.58414 -14.47375 -14.17158 -13.86515 -13.63095 -13.36406 -12.96109 -12.66751 -12.40587 -12.20914 -12.11296 -11.90129 -11.84027 -11.54375 -11.35166 -11.31284 -11.12007 -10.99306 -10.79600 -10.73290 -10.59357 -10.37733 -10.25557 -10.16584 -10.03158 -9.93944 -9.51013 -9.04848 -8.89792 -8.28919 -7.84672 -5.93894 -3.94644 3.35463 3.41545 3.45066 4.22334 4.51594 4.57352 4.68769 4.70481 5.06560 5.10957 5.23390 5.25132 5.37755 5.39181 5.42037 5.43713 5.55020 5.61155 5.67434 5.68437 5.76510 5.79866 5.85834 5.87018 5.92235 6.01191 6.05433 6.08321 6.10892 6.18171 6.23266 6.25064 6.33698 6.40128 6.47474 6.49834 6.64450 6.79536 7.09878 7.23137 7.27775 7.52074 7.55932 7.74617 7.91513 8.07063 8.51786 9.11984 9.68551 11.17741 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035537 B = 0.003644 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.731225 B = 7682.368895 C = 7904.412826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.056 4.056 4 C -0.118 4.118 5 C -0.154 4.154 6 C -0.105 4.105 7 C 0.054 3.946 8 N -0.532 5.532 9 C 0.061 3.939 10 C -0.077 4.077 11 H 0.054 0.946 12 C -0.121 4.121 13 C 0.027 3.973 14 C -0.510 4.510 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.054 3.946 23 C -0.105 4.105 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.049 0.951 43 H 0.015 0.985 44 H 0.011 0.989 45 H 0.259 0.741 46 H 0.030 0.970 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -18.283 -11.069 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.057 4.057 4 C -0.156 4.156 5 C -0.211 4.211 6 C -0.143 4.143 7 C -0.074 4.074 8 N -0.257 5.257 9 C -0.066 4.066 10 C -0.096 4.096 11 H 0.073 0.927 12 C -0.178 4.178 13 C -0.011 4.011 14 C -0.548 4.548 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.074 4.074 23 C -0.143 4.143 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.048 0.952 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.300 -18.384 -10.687 22.178 hybrid contribution -0.343 1.057 0.206 1.130 sum -6.643 -17.326 -10.481 21.312 Atomic orbital electron populations 1.21873 0.96177 1.01144 1.02061 1.21594 0.95758 0.96017 1.01712 1.20602 0.95298 0.94796 0.94961 1.21680 1.00651 0.99311 0.93920 1.21875 1.01531 1.00169 0.97523 1.21699 0.99253 0.95604 0.97720 1.22123 0.88171 0.96413 1.00717 1.61942 1.05516 1.20514 1.37713 1.22299 0.98759 0.86891 0.98682 1.21165 0.99326 0.97699 0.91447 0.92750 1.21563 0.98794 0.98007 0.99483 1.19139 0.96371 0.88863 0.96719 1.21245 1.38802 0.97099 0.97702 0.92609 1.25020 0.95476 0.97035 0.97055 1.69967 1.42363 1.07094 1.34369 0.86641 0.78669 0.77863 0.85113 1.20739 1.21355 1.19914 1.22095 0.99297 0.94496 0.91507 1.21661 0.94434 0.96499 1.01682 0.93308 0.92266 0.92718 0.91967 0.92175 0.92079 0.91788 0.92668 0.93300 0.92474 0.91232 0.91737 0.90419 0.95269 0.95369 0.91656 0.93761 0.94334 0.93156 0.96693 0.97053 0.93157 0.95219 0.91259 0.91292 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.22 37.16 0.34 -0.91 16 2 C -0.11 -0.98 4.58 -26.73 -0.12 -1.10 16 3 C -0.06 -0.56 0.32 -154.39 -0.05 -0.61 16 4 C -0.12 -1.15 3.96 -26.73 -0.11 -1.25 16 5 C -0.15 -1.30 9.12 37.16 0.34 -0.96 16 6 C -0.11 -1.20 4.41 -26.65 -0.12 -1.32 16 7 C 0.05 0.75 5.04 -3.84 -0.02 0.73 16 8 N -0.53 -8.02 3.99 -234.67 -0.94 -8.95 16 9 C 0.06 1.09 4.38 -3.82 -0.02 1.07 16 10 C -0.08 -1.62 2.39 -90.62 -0.22 -1.84 16 11 H 0.05 1.17 6.66 -51.93 -0.35 0.82 16 12 C -0.12 -2.42 8.87 37.16 0.33 -2.09 16 13 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 14 C -0.51 -14.51 8.47 -34.44 -0.29 -14.80 16 15 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 18 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.05 0.69 5.18 -3.83 -0.02 0.67 16 23 C -0.11 -1.12 4.69 -26.65 -0.12 -1.25 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.50 6.26 -51.93 -0.33 0.17 16 26 H 0.05 0.43 6.77 -51.93 -0.35 0.08 16 27 H 0.06 0.51 6.37 -51.93 -0.33 0.18 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.58 6.80 -51.93 -0.35 0.23 16 30 H 0.06 0.72 4.94 -51.93 -0.26 0.46 16 31 H 0.05 0.43 6.65 -51.93 -0.35 0.08 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.48 6.27 -51.93 -0.33 0.16 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.67 6.47 -51.92 -0.34 0.34 16 36 H 0.08 1.20 6.61 -51.93 -0.34 0.86 16 37 H 0.03 0.41 6.62 -51.93 -0.34 0.07 16 38 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 39 H 0.06 1.16 7.80 -51.93 -0.41 0.76 16 40 H 0.04 0.80 7.65 -51.93 -0.40 0.40 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 1.06 7.10 -51.93 -0.37 0.69 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.03 0.38 6.42 -51.93 -0.33 0.05 16 47 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.60 6.35 -51.93 -0.33 0.27 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -29.31 350.88 -9.44 -38.74 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -9.21 Total: -3.82 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -0.29 Total: -21.60 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.20 Total: -35.56 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.31 -9.44 -38.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474454173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.783 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds