Wall clock time and date at job start Mon Mar 30 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47245 * 2 1 4 4 C 1.52998 * 109.52759 * 298.11941 * 3 2 1 5 5 C 1.53001 * 109.46751 * 304.54170 * 4 3 2 6 6 C 1.53120 * 109.52441 * 58.24795 * 3 2 1 7 7 C 1.53033 * 109.28128 * 177.55937 * 6 3 2 8 8 N 1.46843 * 109.52022 * 300.81654 * 7 6 3 9 9 C 1.46906 * 111.00114 * 185.83823 * 8 7 6 10 10 C 1.52998 * 109.46947 * 75.36941 * 9 8 7 11 11 H 1.08998 * 109.47099 * 305.76353 * 10 9 8 12 12 C 1.53000 * 109.47020 * 65.76243 * 10 9 8 13 13 C 1.53002 * 109.47442 * 185.76304 * 10 9 8 14 14 C 1.50694 * 109.47512 * 174.99875 * 13 10 9 15 15 H 1.08003 * 119.99702 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00059 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00058 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99972 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46880 * 90.00262 * 18 16 14 20 20 H 1.48501 * 109.47348 * 210.00368 * 18 16 14 21 21 H 1.48502 * 109.47011 * 330.00344 * 18 16 14 22 22 C 1.46846 * 111.19911 * 61.74579 * 8 7 6 23 23 C 1.53043 * 109.52148 * 298.25453 * 22 8 7 24 24 H 1.08997 * 109.47145 * 183.53271 * 1 2 3 25 25 H 1.09006 * 109.47060 * 303.52763 * 1 2 3 26 26 H 1.08999 * 109.47286 * 63.53004 * 1 2 3 27 27 H 1.09000 * 109.47029 * 239.99714 * 2 1 3 28 28 H 1.08999 * 109.46760 * 120.00382 * 2 1 3 29 29 H 1.08999 * 109.47030 * 64.53182 * 4 3 2 30 30 H 1.08992 * 109.47427 * 184.53475 * 4 3 2 31 31 H 1.08994 * 109.47468 * 65.57664 * 5 4 3 32 32 H 1.09000 * 109.47046 * 185.57420 * 5 4 3 33 33 H 1.09001 * 109.46896 * 305.57272 * 5 4 3 34 34 H 1.09007 * 109.50433 * 57.61049 * 6 3 2 35 35 H 1.09007 * 109.53502 * 297.51851 * 6 3 2 36 36 H 1.09007 * 109.46149 * 180.80306 * 7 6 3 37 37 H 1.09000 * 109.45361 * 60.83022 * 7 6 3 38 38 H 1.09003 * 109.47074 * 315.37648 * 9 8 7 39 39 H 1.08999 * 109.47545 * 195.37169 * 9 8 7 40 40 H 1.08998 * 109.47220 * 305.02335 * 12 10 9 41 41 H 1.09002 * 109.46995 * 65.02409 * 12 10 9 42 42 H 1.09001 * 109.47093 * 185.02091 * 12 10 9 43 43 H 1.09004 * 109.46531 * 295.00378 * 13 10 9 44 44 H 1.09004 * 109.46963 * 54.99970 * 13 10 9 45 45 H 0.96993 * 119.99900 * 179.97438 * 17 16 14 46 46 H 1.08999 * 109.46273 * 58.26980 * 22 8 7 47 47 H 1.08997 * 109.46753 * 178.24021 * 22 8 7 48 48 H 1.08992 * 109.50101 * 299.23977 * 23 22 8 49 49 H 1.09004 * 109.53245 * 179.13783 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5698 2.1511 -1.2718 5 6 2.0226 1.3541 -2.4968 6 6 1.4946 2.1780 1.2272 7 6 2.0566 3.6012 1.2544 8 7 3.5233 3.5486 1.3048 9 6 4.0928 4.8925 1.4715 10 6 3.9019 5.3514 2.9185 11 1 2.8480 5.2782 3.1868 12 6 4.7282 4.4613 3.8490 13 6 4.3641 6.8032 3.0583 14 6 4.0631 7.2944 4.4508 15 1 3.5898 6.6367 5.1648 16 6 4.3927 8.5831 4.8136 17 7 4.9695 9.3838 3.9442 18 14 4.0202 9.1917 6.5399 19 1 5.1794 8.9109 7.4246 20 1 3.7668 10.6545 6.5052 21 1 2.8182 8.4934 7.0623 22 6 4.0723 2.8885 0.1135 23 6 3.5703 1.4440 0.0522 24 1 -0.3633 -1.0257 0.0633 25 1 -0.3633 0.5677 0.8567 26 1 -0.3634 0.4581 -0.9199 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4821 2.2227 -1.2668 30 1 1.9996 3.1520 -1.3101 31 1 1.5154 0.3895 -2.5106 32 1 1.7748 1.9078 -3.4024 33 1 3.1003 1.1974 -2.4502 34 1 1.7964 1.6501 2.1319 35 1 0.4065 2.2175 1.1747 36 1 1.6814 4.1231 2.1348 37 1 1.7429 4.1326 0.3559 38 1 3.5875 5.5870 0.8004 39 1 5.1567 4.8681 1.2354 40 1 4.4611 3.4174 3.6850 41 1 5.7886 4.6023 3.6397 42 1 4.5235 4.7302 4.8853 43 1 5.4372 6.8620 2.8763 44 1 3.8380 7.4235 2.3326 45 1 5.2010 10.2905 4.1993 46 1 3.7491 3.4235 -0.7795 47 1 5.1610 2.8927 0.1651 48 1 3.9048 0.9047 0.9383 49 1 3.9654 0.9585 -0.8402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474454173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:26 Heat of formation + Delta-G solvation = -52.793749 kcal Electronic energy + Delta-G solvation = -21788.270241 eV Core-core repulsion = 18940.943441 eV Total energy + Delta-G solvation = -2847.326799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08977 -38.17393 -35.92904 -34.10028 -32.46233 -31.39475 -31.19392 -28.82681 -27.19501 -25.52660 -24.92063 -24.04634 -23.51600 -21.73831 -20.49377 -18.68880 -18.50946 -17.05847 -16.58355 -16.31871 -15.97367 -15.75310 -15.44457 -15.02615 -14.83535 -14.51616 -14.22934 -13.99207 -13.64459 -13.32725 -13.31000 -13.20180 -12.90759 -12.74965 -12.65722 -12.60295 -12.46848 -12.31801 -12.17951 -12.09214 -11.98451 -11.93591 -11.47096 -11.37544 -11.11048 -11.05076 -11.00031 -10.83128 -10.67954 -10.52960 -9.10098 -8.17441 -6.26686 1.39704 1.40982 1.51952 2.41945 3.02191 3.15785 3.74090 3.83593 3.88639 4.08747 4.24913 4.30795 4.35550 4.37231 4.47094 4.54579 4.56366 4.59906 4.66536 4.71521 4.75974 4.78408 4.87116 4.88113 4.94098 4.98936 5.06226 5.08606 5.14582 5.15536 5.20347 5.24441 5.28866 5.32256 5.39896 5.42189 5.48413 5.49421 5.50374 5.55945 5.59495 5.73357 5.81506 5.89254 6.18575 6.31738 6.35122 6.89151 7.41580 8.94742 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035537 B = 0.003644 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.731225 B = 7682.368895 C = 7904.412826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.052 4.052 4 C -0.116 4.116 5 C -0.151 4.151 6 C -0.099 4.099 7 C 0.053 3.947 8 N -0.534 5.534 9 C 0.073 3.927 10 C -0.068 4.068 11 H 0.049 0.951 12 C -0.110 4.110 13 C 0.033 3.967 14 C -0.528 4.528 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.961 3.039 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.052 3.948 23 C -0.099 4.099 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.027 0.973 38 H 0.016 0.984 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.036 0.964 43 H -0.010 1.010 44 H -0.017 1.017 45 H 0.262 0.738 46 H 0.030 0.970 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.253 -20.255 -10.995 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.053 4.053 4 C -0.153 4.153 5 C -0.208 4.208 6 C -0.136 4.136 7 C -0.075 4.075 8 N -0.258 5.258 9 C -0.055 4.055 10 C -0.087 4.087 11 H 0.067 0.933 12 C -0.167 4.167 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.577 5.577 18 Si 0.786 3.214 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.188 1.188 22 C -0.075 4.075 23 C -0.137 4.137 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.034 0.966 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.008 0.992 44 H 0.001 0.999 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.059 -20.378 -10.618 24.039 hybrid contribution -0.111 1.685 0.135 1.694 sum -7.170 -18.693 -10.483 22.600 Atomic orbital electron populations 1.21863 0.95666 1.01705 1.01936 1.21550 0.96146 0.94712 1.02190 1.20574 0.94754 0.95683 0.94249 1.21640 1.00737 0.98521 0.94447 1.21848 1.01650 1.00442 0.96815 1.21662 0.99854 0.93743 0.98357 1.22146 0.87502 0.98153 0.99686 1.61908 1.06189 1.18393 1.39324 1.22014 0.98859 0.88478 0.96182 1.20963 0.98882 0.94825 0.94013 0.93287 1.21443 0.98233 0.98875 0.98147 1.19021 0.94378 0.91803 0.95230 1.21625 1.38744 0.97577 0.98667 0.92242 1.25956 0.95155 0.97269 1.01574 1.70103 1.43368 1.07539 1.36676 0.85504 0.78955 0.77320 0.79632 1.19814 1.20854 1.18782 1.22185 0.99320 0.95671 0.90352 1.21640 0.94934 0.94733 1.02386 0.92391 0.92815 0.92481 0.90908 0.92283 0.91791 0.93610 0.91589 0.93098 0.92374 0.91801 0.90620 0.92349 0.95470 0.96556 0.91687 0.91530 0.94720 0.94530 0.99194 0.99882 0.92937 0.95190 0.91252 0.91678 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.22 71.98 0.66 -1.43 16 2 C -0.11 -1.58 4.58 30.59 0.14 -1.44 16 3 C -0.05 -0.93 0.32 -52.10 -0.02 -0.95 16 4 C -0.12 -2.04 3.96 30.59 0.12 -1.92 16 5 C -0.15 -2.16 9.12 71.98 0.66 -1.50 16 6 C -0.10 -2.12 4.41 30.65 0.14 -1.98 16 7 C 0.05 1.47 5.04 86.33 0.44 1.90 16 8 N -0.53 -15.85 3.99 -896.35 -3.58 -19.43 16 9 C 0.07 2.64 4.38 86.30 0.38 3.02 16 10 C -0.07 -2.91 2.39 -10.79 -0.03 -2.93 16 11 H 0.05 2.15 6.66 -2.39 -0.02 2.13 16 12 C -0.11 -4.36 8.87 71.98 0.64 -3.72 16 13 C 0.03 1.80 4.45 29.85 0.13 1.94 16 14 C -0.53 -30.61 8.47 25.60 0.22 -30.39 16 15 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 16 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 17 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 18 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 22 C 0.05 1.28 5.18 86.33 0.45 1.73 16 23 C -0.10 -1.92 4.69 30.65 0.14 -1.77 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.78 6.26 -2.38 -0.01 0.77 16 26 H 0.06 0.75 6.77 -2.39 -0.02 0.73 16 27 H 0.07 0.93 6.37 -2.39 -0.02 0.92 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.09 6.80 -2.39 -0.02 1.07 16 30 H 0.05 0.98 4.94 -2.39 -0.01 0.96 16 31 H 0.07 0.81 6.65 -2.39 -0.02 0.80 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.82 6.27 -2.39 -0.01 0.81 16 34 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.08 1.47 6.47 -2.38 -0.02 1.45 16 36 H 0.06 1.83 6.61 -2.38 -0.02 1.81 16 37 H 0.03 0.76 6.62 -2.39 -0.02 0.75 16 38 H 0.02 0.62 8.00 -2.39 -0.02 0.60 16 39 H 0.06 2.35 7.80 -2.39 -0.02 2.33 16 40 H 0.07 2.33 7.65 -2.39 -0.02 2.32 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 42 H 0.04 1.53 7.10 -2.39 -0.02 1.51 16 43 H -0.01 -0.61 8.14 -2.38 -0.02 -0.62 16 44 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.03 0.74 6.42 -2.39 -0.02 0.73 16 47 H 0.07 1.70 7.93 -2.39 -0.02 1.68 16 48 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.08 1.31 6.35 -2.38 -0.02 1.29 16 Total: -1.00 -63.32 350.88 4.15 -59.17 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.88 Total: 10.04 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 4.53 Total: -39.14 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -3.29 Total: -77.33 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -63.32 4.15 -59.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474454173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.379 kcal (2) G-P(sol) polarization free energy of solvation -63.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds