Wall clock time and date at job start Mon Mar 30 2020 00:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47151 * 2 1 4 4 C 1.36940 * 119.99733 * 264.32818 * 3 2 1 5 5 H 1.07994 * 119.99887 * 189.09569 * 4 3 2 6 6 C 1.38816 * 120.00055 * 9.09376 * 4 3 2 7 7 N 1.31622 * 120.00021 * 24.34620 * 6 4 3 8 8 Si 1.86804 * 119.99882 * 204.34865 * 6 4 3 9 9 H 1.48499 * 109.47189 * 85.05026 * 8 6 4 10 10 H 1.48500 * 109.46715 * 205.05100 * 8 6 4 11 11 H 1.48499 * 109.46826 * 325.05066 * 8 6 4 12 12 C 1.46489 * 120.00199 * 84.32461 * 3 2 1 13 13 C 1.52997 * 109.47432 * 270.00046 * 12 3 2 14 14 H 1.09003 * 110.08410 * 55.02789 * 13 12 3 15 15 C 1.54353 * 110.05891 * 293.54907 * 13 12 3 16 16 C 1.54917 * 104.32079 * 217.24785 * 15 13 12 17 17 C 1.54976 * 102.79182 * 37.68842 * 16 15 13 18 18 C 1.53737 * 110.19123 * 176.56009 * 13 12 3 19 19 C 1.52785 * 110.15834 * 238.51837 * 18 13 12 20 20 C 1.53161 * 109.16821 * 177.40122 * 19 18 13 21 21 O 1.42914 * 109.37647 * 303.05382 * 20 19 18 22 22 C 1.42906 * 114.18088 * 61.49493 * 21 20 19 23 23 C 1.52791 * 109.97520 * 359.94154 * 18 13 12 24 24 H 1.09000 * 109.47366 * 300.00445 * 1 2 3 25 25 H 1.09009 * 109.47173 * 60.00327 * 1 2 3 26 26 H 1.09003 * 109.47511 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47366 * 239.99555 * 2 1 3 28 28 H 1.09004 * 109.47102 * 119.99190 * 2 1 3 29 29 H 0.96999 * 120.00066 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47289 * 150.00084 * 12 3 2 31 31 H 1.08998 * 109.47358 * 30.00272 * 12 3 2 32 32 H 1.09002 * 110.48792 * 98.50260 * 15 13 12 33 33 H 1.08998 * 110.48534 * 335.99319 * 15 13 12 34 34 H 1.08997 * 110.75136 * 156.01406 * 16 15 13 35 35 H 1.08998 * 110.74960 * 279.36699 * 16 15 13 36 36 H 1.09000 * 110.49843 * 81.00219 * 17 16 15 37 37 H 1.09001 * 110.50194 * 203.69190 * 17 16 15 38 38 H 1.09003 * 109.52353 * 297.30890 * 19 18 13 39 39 H 1.09003 * 109.52413 * 57.49467 * 19 18 13 40 40 H 1.09005 * 109.49279 * 183.07997 * 20 19 18 41 41 H 1.09006 * 109.49033 * 63.02340 * 20 19 18 42 42 H 1.08999 * 109.48848 * 178.53784 * 22 21 20 43 43 H 1.09000 * 109.50047 * 58.48835 * 22 21 20 44 44 H 1.09007 * 109.52572 * 302.40498 * 23 18 13 45 45 H 1.08996 * 109.52405 * 62.58016 * 23 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3570 1.9877 -1.1802 5 1 2.8529 2.9470 -1.1714 6 6 2.0631 1.3693 -2.3877 7 7 1.0828 0.4937 -2.4572 8 14 3.0588 1.7797 -3.9140 9 1 4.2835 0.9404 -3.9465 10 1 2.2422 1.5109 -5.1248 11 1 3.4424 3.2140 -3.8838 12 6 2.1442 2.1137 1.2624 13 6 0.8347 2.8472 1.5593 14 1 0.0020 2.1438 1.5533 15 6 0.5992 3.9553 0.5109 16 6 -0.0317 5.1179 1.3174 17 6 0.7350 5.0579 2.6628 18 6 0.9188 3.5520 2.9230 19 6 -0.1888 3.0464 3.8461 20 6 -0.0448 3.7141 5.2170 21 8 1.2576 3.4456 5.7406 22 6 2.3266 3.9557 4.9411 23 6 2.2851 3.2986 3.5582 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.8776 0.0613 -3.3009 30 1 2.9559 2.8369 1.1835 31 1 2.3591 1.4130 2.0692 32 1 -0.0880 3.6099 -0.2614 33 1 1.5444 4.2678 0.0672 34 1 0.1389 6.0715 0.8179 35 1 -1.0970 4.9470 1.4721 36 1 1.7030 5.5508 2.5728 37 1 0.1459 5.5137 3.4586 38 1 -1.1605 3.2959 3.4197 39 1 -0.1054 1.9653 3.9570 40 1 -0.7989 3.3165 5.8962 41 1 -0.1801 4.7907 5.1132 42 1 3.2789 3.7319 5.4217 43 1 2.2180 5.0350 4.8342 44 1 2.4462 2.2253 3.6599 45 1 3.0647 3.7266 2.9281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615354078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:06 Heat of formation + Delta-G solvation = -34.741558 kcal Electronic energy + Delta-G solvation = -22606.471202 eV Core-core repulsion = 19624.094109 eV Total energy + Delta-G solvation = -2982.377092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.32555 -37.30130 -35.48242 -31.82678 -31.60213 -30.98136 -29.77317 -28.21734 -25.74560 -24.73092 -23.60896 -22.59782 -21.89830 -20.42983 -19.25182 -17.75402 -16.77555 -15.92849 -15.90702 -15.22071 -14.94199 -14.57408 -14.17695 -13.79487 -13.58915 -13.27396 -13.06114 -12.57293 -12.21122 -11.88109 -11.73930 -11.49752 -11.34881 -11.17341 -11.03684 -10.88929 -10.83960 -10.64252 -10.48684 -10.33482 -10.15799 -10.12434 -9.92600 -9.69468 -9.53908 -9.39113 -9.20787 -9.10906 -8.25268 -6.76902 -5.67998 -2.98136 3.42767 3.50355 3.51198 3.97291 4.56311 4.83520 4.85156 4.92899 5.17025 5.22428 5.34112 5.40630 5.47559 5.53732 5.57400 5.69536 5.73259 5.77458 5.93619 5.95472 6.01106 6.10517 6.17824 6.22321 6.26355 6.32066 6.40377 6.47820 6.58467 6.69213 6.75258 6.82880 6.86618 6.99437 7.06287 7.14244 7.24711 7.28520 7.32723 7.74248 7.85222 8.17629 8.45271 9.33386 9.97441 10.43040 11.35831 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027482 B = 0.005792 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.612569 B = 4833.352778 C = 5048.452395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.169 3.831 3 N -0.597 5.597 4 C -0.236 4.236 5 H 0.071 0.929 6 C -0.006 4.006 7 N -0.898 5.898 8 Si 0.891 3.109 9 H -0.291 1.291 10 H -0.295 1.295 11 H -0.284 1.284 12 C 0.159 3.841 13 C -0.102 4.102 14 H 0.070 0.930 15 C -0.095 4.095 16 C -0.128 4.128 17 C -0.116 4.116 18 C -0.058 4.058 19 C -0.139 4.139 20 C 0.060 3.940 21 O -0.387 6.387 22 C 0.060 3.940 23 C -0.145 4.145 24 H 0.012 0.988 25 H 0.091 0.909 26 H 0.015 0.985 27 H 0.085 0.915 28 H -0.001 1.001 29 H 0.249 0.751 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.075 0.925 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 6.852 12.394 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 N -0.318 5.318 4 C -0.365 4.365 5 H 0.089 0.911 6 C -0.203 4.203 7 N -0.545 5.545 8 Si 0.722 3.278 9 H -0.218 1.218 10 H -0.221 1.221 11 H -0.209 1.209 12 C 0.032 3.968 13 C -0.123 4.123 14 H 0.089 0.911 15 C -0.132 4.132 16 C -0.166 4.166 17 C -0.153 4.153 18 C -0.059 4.059 19 C -0.177 4.177 20 C -0.016 4.016 21 O -0.306 6.306 22 C -0.017 4.017 23 C -0.182 4.182 24 H 0.031 0.969 25 H 0.109 0.891 26 H 0.034 0.966 27 H 0.103 0.897 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.508 6.651 12.406 14.157 hybrid contribution 0.221 0.346 -1.202 1.270 sum -1.288 6.997 11.204 13.272 Atomic orbital electron populations 1.22422 0.99461 0.97906 1.01069 1.20740 0.92401 0.84700 0.97822 1.44264 1.75768 1.10103 1.01687 1.19216 1.30181 1.03525 0.83573 0.91127 1.24675 0.98144 1.00346 0.97104 1.70146 1.27338 1.32420 1.24609 0.86452 0.80394 0.77699 0.83261 1.21837 1.22130 1.20940 1.21021 0.93880 0.93784 0.88165 1.22622 1.01567 0.97116 0.90978 0.91141 1.22178 1.00743 0.93322 0.97006 1.22572 0.99005 0.99109 0.95908 1.22506 0.99943 0.95516 0.97324 1.21025 0.93845 0.95095 0.95908 1.22186 0.99223 1.01129 0.95158 1.22642 0.84872 0.98936 0.95181 1.87873 1.14411 1.79553 1.48778 1.22648 0.90142 0.97024 0.91859 1.22350 0.97878 1.02154 0.95848 0.96873 0.89068 0.96606 0.89734 0.98300 0.94035 0.93905 0.94494 0.91753 0.91705 0.92545 0.92466 0.91939 0.92546 0.91187 0.91192 0.89552 0.93358 0.89462 0.93570 0.90610 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.54 37.15 0.35 -3.10 16 2 C 0.17 4.07 5.64 -4.04 -0.02 4.04 16 3 N -0.60 -14.30 2.48 -173.24 -0.43 -14.73 16 4 C -0.24 -6.16 8.48 -15.06 -0.13 -6.29 16 5 H 0.07 1.84 7.45 -52.49 -0.39 1.44 16 6 C -0.01 -0.17 4.91 -17.43 -0.09 -0.25 16 7 N -0.90 -24.89 8.52 55.49 0.47 -24.42 16 8 Si 0.89 21.53 29.62 -169.99 -5.03 16.49 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.16 3.14 3.92 -4.05 -0.02 3.12 16 13 C -0.10 -1.80 2.74 -89.53 -0.25 -2.05 16 14 H 0.07 1.39 5.34 -51.93 -0.28 1.11 16 15 C -0.09 -1.73 5.44 -25.01 -0.14 -1.87 16 16 C -0.13 -1.87 6.91 -24.68 -0.17 -2.04 16 17 C -0.12 -1.52 4.78 -25.21 -0.12 -1.64 16 18 C -0.06 -0.82 0.63 -153.86 -0.10 -0.92 16 19 C -0.14 -1.85 4.65 -26.76 -0.12 -1.97 16 20 C 0.06 0.72 6.62 37.24 0.25 0.96 16 21 O -0.39 -5.27 10.76 -35.23 -0.38 -5.65 16 22 C 0.06 0.72 6.64 37.24 0.25 0.97 16 23 C -0.14 -1.96 3.59 -26.75 -0.10 -2.06 16 24 H 0.01 0.27 5.95 -51.93 -0.31 -0.04 16 25 H 0.09 2.39 6.24 -51.92 -0.32 2.07 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 2.28 5.90 -51.93 -0.31 1.97 16 28 H 0.00 -0.03 7.97 -51.93 -0.41 -0.44 16 29 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.04 0.84 6.81 -51.93 -0.35 0.49 16 31 H 0.04 0.71 6.27 -51.93 -0.33 0.38 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 1.28 6.93 -51.93 -0.36 0.92 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.81 7.77 -51.93 -0.40 0.40 16 37 H 0.06 0.67 6.06 -51.93 -0.31 0.36 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.53 6.43 -51.93 -0.33 0.20 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.52 7.47 -51.93 -0.39 0.13 16 44 H 0.08 1.11 6.50 -51.93 -0.34 0.77 16 45 H 0.08 1.04 6.91 -51.93 -0.36 0.68 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -27.31 320.66 -8.65 -35.96 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.72 Total: 0.61 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.39 Total: -13.09 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.04 Total: -39.15 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.38 Total: -5.65 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.31 -8.65 -35.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615354078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.218 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds