Wall clock time and date at job start Mon Mar 30 2020 00:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47151 * 2 1 4 4 C 1.36940 * 119.99733 * 264.32818 * 3 2 1 5 5 H 1.07994 * 119.99887 * 189.09569 * 4 3 2 6 6 C 1.38816 * 120.00055 * 9.09376 * 4 3 2 7 7 N 1.31622 * 120.00021 * 24.34620 * 6 4 3 8 8 Si 1.86804 * 119.99882 * 204.34865 * 6 4 3 9 9 H 1.48499 * 109.47189 * 85.05026 * 8 6 4 10 10 H 1.48500 * 109.46715 * 205.05100 * 8 6 4 11 11 H 1.48499 * 109.46826 * 325.05066 * 8 6 4 12 12 C 1.46489 * 120.00199 * 84.32461 * 3 2 1 13 13 C 1.52997 * 109.47432 * 270.00046 * 12 3 2 14 14 H 1.09003 * 110.08410 * 55.02789 * 13 12 3 15 15 C 1.54353 * 110.05891 * 293.54907 * 13 12 3 16 16 C 1.54917 * 104.32079 * 217.24785 * 15 13 12 17 17 C 1.54976 * 102.79182 * 37.68842 * 16 15 13 18 18 C 1.53737 * 110.19123 * 176.56009 * 13 12 3 19 19 C 1.52785 * 110.15834 * 238.51837 * 18 13 12 20 20 C 1.53161 * 109.16821 * 177.40122 * 19 18 13 21 21 O 1.42914 * 109.37647 * 303.05382 * 20 19 18 22 22 C 1.42906 * 114.18088 * 61.49493 * 21 20 19 23 23 C 1.52791 * 109.97520 * 359.94154 * 18 13 12 24 24 H 1.09000 * 109.47366 * 300.00445 * 1 2 3 25 25 H 1.09009 * 109.47173 * 60.00327 * 1 2 3 26 26 H 1.09003 * 109.47511 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47366 * 239.99555 * 2 1 3 28 28 H 1.09004 * 109.47102 * 119.99190 * 2 1 3 29 29 H 0.96999 * 120.00066 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47289 * 150.00084 * 12 3 2 31 31 H 1.08998 * 109.47358 * 30.00272 * 12 3 2 32 32 H 1.09002 * 110.48792 * 98.50260 * 15 13 12 33 33 H 1.08998 * 110.48534 * 335.99319 * 15 13 12 34 34 H 1.08997 * 110.75136 * 156.01406 * 16 15 13 35 35 H 1.08998 * 110.74960 * 279.36699 * 16 15 13 36 36 H 1.09000 * 110.49843 * 81.00219 * 17 16 15 37 37 H 1.09001 * 110.50194 * 203.69190 * 17 16 15 38 38 H 1.09003 * 109.52353 * 297.30890 * 19 18 13 39 39 H 1.09003 * 109.52413 * 57.49467 * 19 18 13 40 40 H 1.09005 * 109.49279 * 183.07997 * 20 19 18 41 41 H 1.09006 * 109.49033 * 63.02340 * 20 19 18 42 42 H 1.08999 * 109.48848 * 178.53784 * 22 21 20 43 43 H 1.09000 * 109.50047 * 58.48835 * 22 21 20 44 44 H 1.09007 * 109.52572 * 302.40498 * 23 18 13 45 45 H 1.08996 * 109.52405 * 62.58016 * 23 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3570 1.9877 -1.1802 5 1 2.8529 2.9470 -1.1714 6 6 2.0631 1.3693 -2.3877 7 7 1.0828 0.4937 -2.4572 8 14 3.0588 1.7797 -3.9140 9 1 4.2835 0.9404 -3.9465 10 1 2.2422 1.5109 -5.1248 11 1 3.4424 3.2140 -3.8838 12 6 2.1442 2.1137 1.2624 13 6 0.8347 2.8472 1.5593 14 1 0.0020 2.1438 1.5533 15 6 0.5992 3.9553 0.5109 16 6 -0.0317 5.1179 1.3174 17 6 0.7350 5.0579 2.6628 18 6 0.9188 3.5520 2.9230 19 6 -0.1888 3.0464 3.8461 20 6 -0.0448 3.7141 5.2170 21 8 1.2576 3.4456 5.7406 22 6 2.3266 3.9557 4.9411 23 6 2.2851 3.2986 3.5582 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 0.8776 0.0613 -3.3009 30 1 2.9559 2.8369 1.1835 31 1 2.3591 1.4130 2.0692 32 1 -0.0880 3.6099 -0.2614 33 1 1.5444 4.2678 0.0672 34 1 0.1389 6.0715 0.8179 35 1 -1.0970 4.9470 1.4721 36 1 1.7030 5.5508 2.5728 37 1 0.1459 5.5137 3.4586 38 1 -1.1605 3.2959 3.4197 39 1 -0.1054 1.9653 3.9570 40 1 -0.7989 3.3165 5.8962 41 1 -0.1801 4.7907 5.1132 42 1 3.2789 3.7319 5.4217 43 1 2.2180 5.0350 4.8342 44 1 2.4462 2.2253 3.6599 45 1 3.0647 3.7266 2.9281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615354078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:06 Heat of formation + Delta-G solvation = -48.484317 kcal Electronic energy + Delta-G solvation = -22607.067132 eV Core-core repulsion = 19624.094109 eV Total energy + Delta-G solvation = -2982.973023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48681 -38.60795 -37.16235 -33.42441 -32.96629 -32.18239 -31.46006 -29.91494 -27.04856 -26.28413 -24.93620 -24.04721 -23.10530 -22.25143 -20.68175 -18.91245 -18.66952 -17.15559 -16.96534 -16.73682 -16.25145 -15.90810 -15.63610 -15.23128 -15.06703 -14.83678 -14.54365 -13.84454 -13.75300 -13.64303 -13.10889 -13.03533 -12.88514 -12.76559 -12.47933 -12.43952 -12.23472 -12.13791 -12.02603 -11.94299 -11.59270 -11.49556 -11.36103 -11.24314 -11.22019 -10.86846 -10.74000 -10.34156 -10.16985 -8.72753 -7.73547 -5.03594 1.47472 1.51378 1.56421 2.57902 3.06601 3.34489 3.59269 3.70379 3.75741 3.92040 4.19698 4.23624 4.33575 4.36799 4.44510 4.49615 4.54241 4.66662 4.71377 4.74093 4.82673 4.87099 4.89925 4.94157 4.95021 5.05512 5.08556 5.14681 5.16538 5.22604 5.24322 5.26647 5.34017 5.42040 5.53407 5.57871 5.62019 5.71872 5.72909 5.86187 6.18118 6.36294 6.42600 7.28573 8.01523 8.42582 9.28569 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027482 B = 0.005792 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.612569 B = 4833.352778 C = 5048.452395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.171 3.829 3 N -0.610 5.610 4 C -0.233 4.233 5 H 0.069 0.931 6 C -0.055 4.055 7 N -0.919 5.919 8 Si 0.946 3.054 9 H -0.293 1.293 10 H -0.302 1.302 11 H -0.276 1.276 12 C 0.160 3.840 13 C -0.094 4.094 14 H 0.049 0.951 15 C -0.093 4.093 16 C -0.120 4.120 17 C -0.107 4.107 18 C -0.053 4.053 19 C -0.137 4.137 20 C 0.062 3.938 21 O -0.403 6.403 22 C 0.062 3.938 23 C -0.143 4.143 24 H 0.024 0.976 25 H 0.058 0.942 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.016 0.984 29 H 0.242 0.758 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.025 0.975 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 8.518 14.410 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.045 3.955 3 N -0.332 5.332 4 C -0.363 4.363 5 H 0.087 0.913 6 C -0.249 4.249 7 N -0.568 5.568 8 Si 0.777 3.223 9 H -0.221 1.221 10 H -0.229 1.229 11 H -0.202 1.202 12 C 0.034 3.966 13 C -0.115 4.115 14 H 0.067 0.933 15 C -0.131 4.131 16 C -0.158 4.158 17 C -0.144 4.144 18 C -0.054 4.054 19 C -0.175 4.175 20 C -0.014 4.014 21 O -0.322 6.322 22 C -0.014 4.014 23 C -0.181 4.181 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.336 8.337 14.449 16.735 hybrid contribution 0.179 -0.192 -1.807 1.826 sum -1.157 8.145 12.641 15.083 Atomic orbital electron populations 1.22185 0.98815 0.98286 0.99933 1.20618 0.92885 0.84898 0.97063 1.44432 1.75889 1.10376 1.02473 1.19380 1.29244 1.03237 0.84478 0.91315 1.25262 0.99137 1.01184 0.99353 1.70305 1.28368 1.33590 1.24492 0.85575 0.78762 0.77629 0.80353 1.22091 1.22883 1.20179 1.21137 0.95050 0.93844 0.86564 1.22405 0.99173 0.96575 0.93309 0.93291 1.22062 0.99145 0.95236 0.96656 1.22514 0.99293 0.97803 0.96146 1.22477 1.00517 0.94502 0.96932 1.20946 0.94989 0.95644 0.93831 1.22155 0.98899 1.00351 0.96098 1.22735 0.84666 0.99797 0.94250 1.87867 1.15195 1.79954 1.49223 1.22707 0.90541 0.97631 0.90530 1.22308 0.97188 1.01454 0.97121 0.95739 0.92278 0.95418 0.92718 0.96624 0.94847 0.93736 0.93694 0.95584 0.93564 0.91339 0.91796 0.91177 0.90116 0.90770 0.92774 0.88002 0.91684 0.88107 0.91958 0.92125 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 9.54 71.98 0.69 -5.55 16 2 C 0.17 8.36 5.64 86.38 0.49 8.85 16 3 N -0.61 -29.63 2.48 -702.02 -1.74 -31.37 16 4 C -0.23 -12.40 8.48 84.03 0.71 -11.69 16 5 H 0.07 3.62 7.45 -2.91 -0.02 3.60 16 6 C -0.06 -3.03 4.91 84.86 0.42 -2.61 16 7 N -0.92 -52.50 8.52 21.65 0.18 -52.32 16 8 Si 0.95 45.12 29.62 68.60 2.03 47.15 16 9 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 C 0.16 6.29 3.92 86.38 0.34 6.63 16 13 C -0.09 -3.29 2.74 -10.09 -0.03 -3.32 16 14 H 0.05 1.93 5.34 -2.39 -0.01 1.92 16 15 C -0.09 -3.42 5.44 31.71 0.17 -3.25 16 16 C -0.12 -3.26 6.91 31.93 0.22 -3.04 16 17 C -0.11 -2.47 4.78 31.58 0.15 -2.32 16 18 C -0.05 -1.41 0.63 -51.76 -0.03 -1.44 16 19 C -0.14 -3.33 4.65 30.58 0.14 -3.19 16 20 C 0.06 1.25 6.62 72.04 0.48 1.73 16 21 O -0.40 -9.67 10.76 -148.98 -1.60 -11.27 16 22 C 0.06 1.30 6.64 72.04 0.48 1.77 16 23 C -0.14 -3.56 3.59 30.58 0.11 -3.45 16 24 H 0.02 1.05 5.95 -2.39 -0.01 1.04 16 25 H 0.06 3.19 6.24 -2.38 -0.01 3.17 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 3.02 5.90 -2.39 -0.01 3.00 16 28 H 0.02 0.70 7.97 -2.39 -0.02 0.68 16 29 H 0.24 13.69 8.31 -92.71 -0.77 12.92 16 30 H 0.04 1.73 6.81 -2.39 -0.02 1.72 16 31 H 0.04 1.70 6.27 -2.39 -0.01 1.68 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.84 6.93 -2.39 -0.02 1.82 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.55 7.77 -2.39 -0.02 1.53 16 37 H 0.08 1.53 6.06 -2.39 -0.01 1.52 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.07 1.12 6.43 -2.38 -0.02 1.10 16 42 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.12 7.47 -2.39 -0.02 1.10 16 44 H 0.06 1.69 6.50 -2.38 -0.02 1.67 16 45 H 0.08 1.90 6.91 -2.39 -0.02 1.88 16 Total: -1.00 -59.41 320.66 4.16 -55.25 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.95 Total: 13.45 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 4.33 Total: -20.89 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -1.55 Total: -83.68 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -1.60 Total: -11.27 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -59.41 4.16 -55.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615354078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.765 kcal (2) G-P(sol) polarization free energy of solvation -59.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds