Wall clock time and date at job start Mon Mar 30 2020 02:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 C 1.53001 * 109.47099 * 65.00035 * 3 2 1 5 5 C 1.53000 * 109.47157 * 185.25315 * 4 3 2 6 6 C 1.53000 * 109.47559 * 184.99931 * 3 2 1 7 7 N 1.46896 * 109.47289 * 174.49623 * 6 3 2 8 8 C 1.46897 * 110.99886 * 160.41137 * 7 6 3 9 9 C 1.50698 * 109.47607 * 293.88648 * 8 7 6 10 10 H 1.08002 * 119.99339 * 4.27212 * 9 8 7 11 11 C 1.37876 * 120.00369 * 184.27952 * 9 8 7 12 12 N 1.31513 * 119.99763 * 184.97657 * 11 9 8 13 13 Si 1.86797 * 120.00009 * 4.96913 * 11 9 8 14 14 H 1.48497 * 109.47235 * 90.00414 * 13 11 9 15 15 H 1.48505 * 109.47246 * 210.00393 * 13 11 9 16 16 H 1.48501 * 109.47056 * 330.00513 * 13 11 9 17 17 C 1.46892 * 110.99955 * 284.36576 * 7 6 3 18 18 C 1.53007 * 109.47345 * 170.00061 * 17 7 6 19 19 C 1.53780 * 113.61787 * 174.99883 * 18 17 7 20 20 C 1.53786 * 87.08058 * 140.06692 * 19 18 17 21 21 C 1.52995 * 113.61265 * 89.11610 * 20 19 18 22 22 C 1.53791 * 87.17036 * 334.52790 * 20 19 18 23 23 H 1.09007 * 109.46974 * 300.00089 * 1 2 3 24 24 H 1.08999 * 109.47362 * 59.99917 * 1 2 3 25 25 H 1.08999 * 109.46972 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47094 * 240.00266 * 2 1 3 27 27 H 1.09005 * 109.46936 * 120.00016 * 2 1 3 28 28 H 1.08998 * 109.47208 * 305.00201 * 3 2 1 29 29 H 1.09009 * 109.47441 * 305.25102 * 4 3 2 30 30 H 1.08998 * 109.47390 * 65.25494 * 4 3 2 31 31 H 1.08996 * 109.47197 * 52.98032 * 5 4 3 32 32 H 1.09003 * 109.47264 * 172.97665 * 5 4 3 33 33 H 1.08995 * 109.47195 * 292.97517 * 5 4 3 34 34 H 1.09003 * 109.46750 * 54.49306 * 6 3 2 35 35 H 1.08998 * 109.46997 * 294.49854 * 6 3 2 36 36 H 1.09001 * 109.47333 * 53.88473 * 8 7 6 37 37 H 1.08995 * 109.47186 * 173.88094 * 8 7 6 38 38 H 0.97001 * 119.99670 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.47564 * 50.00072 * 17 7 6 40 40 H 1.09004 * 109.47469 * 289.99795 * 17 7 6 41 41 H 1.09009 * 112.84545 * 43.80341 * 18 17 7 42 42 H 1.08999 * 113.60864 * 25.51890 * 19 18 17 43 43 H 1.08995 * 113.68873 * 254.62264 * 19 18 17 44 44 H 1.08996 * 113.61289 * 219.93936 * 20 19 18 45 45 H 1.08994 * 109.47246 * 61.53081 * 21 20 19 46 46 H 1.08998 * 109.47435 * 301.52702 * 21 20 19 47 47 H 1.09005 * 109.46900 * 181.52929 * 21 20 19 48 48 H 1.08999 * 113.61166 * 140.02889 * 22 20 19 49 49 H 1.09003 * 113.61237 * 270.92151 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0298 3.6038 1.2534 6 6 3.5648 1.4444 -0.1257 7 7 4.0436 2.8268 -0.2582 8 6 5.4697 2.9248 0.0801 9 6 5.6610 2.6193 1.5434 10 1 4.8192 2.3096 2.1449 11 6 6.9107 2.7355 2.1143 12 7 7.0981 2.3757 3.3653 13 14 8.3375 3.4036 1.1107 14 1 8.4031 4.8791 1.2649 15 1 9.6062 2.7989 1.5905 16 1 8.1376 3.0639 -0.3210 17 6 3.7858 3.3460 -1.6079 18 6 4.0645 4.8502 -1.6376 19 6 3.9419 5.4720 -3.0387 20 6 3.2679 6.6759 -2.3596 21 6 4.2532 7.7559 -1.9086 22 6 2.8529 5.7123 -1.2351 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6054 1.9815 -0.8418 29 1 0.5568 2.0432 1.4424 30 1 2.1443 1.6449 2.1422 31 1 1.6217 4.0560 0.3495 32 1 1.6322 4.1183 2.1283 33 1 3.1163 3.6896 1.2440 34 1 3.8575 0.8725 -1.0063 35 1 4.0033 0.9917 0.7636 36 1 6.0348 2.2093 -0.5172 37 1 5.8244 3.9337 -0.1299 38 1 7.9772 2.4578 3.7670 39 1 2.7448 3.1641 -1.8746 40 1 4.4372 2.8418 -2.3218 41 1 4.9843 5.1206 -1.1189 42 1 3.2796 4.9194 -3.7051 43 1 4.9014 5.7103 -3.4975 44 1 2.4257 7.0793 -2.9218 45 1 4.7796 8.1528 -2.7765 46 1 4.9730 7.3237 -1.2134 47 1 3.7090 8.5607 -1.4143 48 1 2.9345 6.1443 -0.2377 49 1 1.8934 5.2254 -1.4094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644736209.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:05 Heat of formation + Delta-G solvation = -0.433147 kcal Electronic energy + Delta-G solvation = -22363.242287 eV Core-core repulsion = 19518.186014 eV Total energy + Delta-G solvation = -2845.056273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.37906 -37.66080 -34.95464 -32.41899 -31.04892 -29.96588 -28.43993 -27.24610 -25.46082 -25.04028 -22.85242 -22.14267 -21.84853 -19.82136 -19.18502 -18.24617 -16.90795 -15.45342 -15.12228 -14.86819 -14.38362 -14.14772 -14.03308 -13.81650 -13.45170 -12.99935 -12.76031 -12.46375 -12.39049 -12.18317 -12.01446 -11.89448 -11.74134 -11.50065 -11.37926 -11.09661 -10.86219 -10.78472 -10.62953 -10.53897 -10.25815 -10.23341 -10.07470 -9.89721 -9.81419 -9.67867 -9.57550 -9.46934 -9.17817 -8.49402 -7.06869 -6.03277 -3.99039 3.28880 3.36953 3.38960 4.43833 4.62135 4.79200 4.92623 5.01037 5.17031 5.22598 5.29741 5.36606 5.47082 5.57786 5.63543 5.69353 5.85176 5.87105 5.89562 5.94413 5.97793 6.01109 6.06924 6.09390 6.11969 6.14393 6.23475 6.25558 6.32199 6.39326 6.41189 6.43327 6.51676 6.59463 6.66814 6.73337 6.80592 6.88420 6.89661 6.98100 7.04227 7.12985 7.65368 7.77698 7.99716 8.14219 8.69280 9.07216 9.59763 11.09605 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.009022 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.369807 B = 3102.789418 C = 5119.243366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.080 4.080 4 C -0.102 4.102 5 C -0.159 4.159 6 C 0.064 3.936 7 N -0.512 5.512 8 C 0.159 3.841 9 C -0.506 4.506 10 H 0.084 0.916 11 C 0.069 3.931 12 N -0.899 5.899 13 Si 0.871 3.129 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.269 1.269 17 C 0.062 3.938 18 C -0.101 4.101 19 C -0.136 4.136 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.117 4.117 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.020 0.980 33 H 0.119 0.881 34 H 0.016 0.984 35 H 0.090 0.910 36 H -0.017 1.017 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.063 0.937 40 H 0.019 0.981 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.038 3.113 -10.796 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.099 4.099 4 C -0.139 4.139 5 C -0.216 4.216 6 C -0.064 4.064 7 N -0.235 5.235 8 C 0.032 3.968 9 C -0.544 4.544 10 H 0.101 0.899 11 C -0.132 4.132 12 N -0.539 5.539 13 Si 0.698 3.302 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.194 1.194 17 C -0.066 4.066 18 C -0.120 4.120 19 C -0.174 4.174 20 C -0.138 4.138 21 C -0.192 4.192 22 C -0.155 4.155 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.137 0.863 34 H 0.034 0.966 35 H 0.108 0.892 36 H 0.000 1.000 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.142 3.386 -10.318 14.859 hybrid contribution 1.312 -0.189 -1.054 1.694 sum -8.830 3.198 -11.372 14.749 Atomic orbital electron populations 1.21797 0.96426 1.00762 1.01682 1.21548 0.95319 0.97370 1.01643 1.21214 0.95854 0.94402 0.98440 1.21388 0.98342 0.97538 0.96640 1.22203 1.07378 0.93894 0.98080 1.22110 0.93778 0.89564 1.00970 1.62152 1.19653 1.19344 1.22375 1.20224 0.83713 0.95574 0.97262 1.21060 0.95727 1.45119 0.92498 0.89852 1.24883 0.98326 0.95256 0.94748 1.69900 1.23113 1.48105 1.12745 0.86948 0.82561 0.79658 0.81021 1.20218 1.21417 1.19378 1.22100 0.99507 0.94139 0.90877 1.22613 0.99566 0.94230 0.95547 1.23029 1.00335 0.97189 0.96846 1.22316 0.98312 0.94696 0.98475 1.21584 0.98842 0.97798 1.00948 1.22980 0.97830 0.96518 0.98149 0.92426 0.93280 0.93467 0.92725 0.91929 0.92238 0.94204 0.92537 0.94364 0.96057 0.86326 0.96611 0.89198 0.99982 0.95527 0.92785 0.91817 0.96302 0.88712 0.90680 0.92077 0.91463 0.92959 0.92112 0.92733 0.91289 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.67 37.16 0.36 -1.39 16 2 C -0.12 -1.64 5.40 -26.73 -0.14 -1.79 16 3 C -0.08 -1.25 2.05 -90.62 -0.19 -1.43 16 4 C -0.10 -1.67 5.27 -26.73 -0.14 -1.82 16 5 C -0.16 -2.79 8.94 37.16 0.33 -2.46 16 6 C 0.06 1.18 4.17 -3.83 -0.02 1.17 16 7 N -0.51 -9.91 0.99 -236.08 -0.23 -10.14 16 8 C 0.16 3.68 3.62 -4.98 -0.02 3.67 16 9 C -0.51 -13.77 8.50 -34.44 -0.29 -14.06 16 10 H 0.08 2.46 7.31 -52.49 -0.38 2.08 16 11 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 12 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 13 Si 0.87 21.34 27.37 -169.99 -4.65 16.68 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.27 -6.40 6.73 56.52 0.38 -6.02 16 17 C 0.06 1.03 4.63 -3.82 -0.02 1.01 16 18 C -0.10 -1.55 3.36 -89.66 -0.30 -1.85 16 19 C -0.14 -1.74 7.23 -25.92 -0.19 -1.93 16 20 C -0.12 -1.46 4.54 -89.80 -0.41 -1.87 16 21 C -0.13 -1.59 9.58 37.15 0.36 -1.24 16 22 C -0.12 -1.63 6.23 -25.77 -0.16 -1.79 16 23 H 0.06 0.68 6.46 -51.93 -0.34 0.34 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.90 6.64 -51.93 -0.34 0.56 16 29 H 0.04 0.59 6.33 -51.92 -0.33 0.26 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.61 6.37 -51.93 -0.33 0.28 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.12 2.47 5.13 -51.93 -0.27 2.20 16 34 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 35 H 0.09 1.93 6.50 -51.93 -0.34 1.59 16 36 H -0.02 -0.43 7.70 -51.93 -0.40 -0.83 16 37 H 0.03 0.63 5.02 -51.93 -0.26 0.36 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.06 0.97 6.27 -51.93 -0.33 0.65 16 40 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 41 H 0.09 1.68 5.64 -51.92 -0.29 1.39 16 42 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 43 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.80 7.33 -51.93 -0.38 0.42 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 49 H 0.08 1.01 7.23 -51.93 -0.38 0.64 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -27.82 357.87 -9.07 -36.89 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -9.42 Total: 1.44 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -0.92 Total: -23.91 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.54 Total: -36.50 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.65 Total: 16.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.82 -9.07 -36.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644736209.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.457 kcal (2) G-P(sol) polarization free energy of solvation -27.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds