Wall clock time and date at job start Mon Mar 30 2020 01:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46966 * 2 1 4 4 C 1.52999 * 109.46966 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.53354 * 300.09990 * 4 3 2 6 6 C 1.53116 * 109.50254 * 60.20005 * 4 3 2 7 7 C 1.53119 * 109.15698 * 177.59388 * 6 4 3 8 8 C 1.53030 * 109.28191 * 302.34497 * 7 6 4 9 9 N 1.46852 * 109.52529 * 59.17812 * 8 7 6 10 10 C 1.46899 * 110.99978 * 174.16328 * 9 8 7 11 11 C 1.52998 * 109.47036 * 288.32082 * 10 9 8 12 12 H 1.09002 * 109.47451 * 54.80150 * 11 10 9 13 13 C 1.53007 * 109.47147 * 174.79671 * 11 10 9 14 14 C 1.53004 * 109.47336 * 294.79777 * 11 10 9 15 15 C 1.50705 * 109.46961 * 175.00222 * 14 11 10 16 16 H 1.07997 * 120.00255 * 359.97438 * 15 14 11 17 17 C 1.37878 * 119.99785 * 180.02562 * 15 14 11 18 18 N 1.31521 * 120.00054 * 0.26964 * 17 15 14 19 19 Si 1.86793 * 120.00219 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47158 * 89.99697 * 19 17 15 21 21 H 1.48497 * 109.47508 * 209.99653 * 19 17 15 22 22 H 1.48500 * 109.47028 * 329.99860 * 19 17 15 23 23 C 1.46844 * 111.19751 * 298.26298 * 9 8 7 24 24 H 1.09002 * 109.47301 * 300.00109 * 1 2 3 25 25 H 1.09003 * 109.47094 * 59.99780 * 1 2 3 26 26 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47320 * 240.00679 * 2 1 3 28 28 H 1.08992 * 109.47316 * 119.99803 * 2 1 3 29 29 H 1.09001 * 109.46547 * 60.00205 * 3 2 1 30 30 H 1.08994 * 109.47415 * 300.00249 * 3 2 1 31 31 H 1.08993 * 109.47203 * 299.89878 * 5 4 3 32 32 H 1.08996 * 109.47370 * 59.90785 * 5 4 3 33 33 H 1.09001 * 109.46732 * 179.90566 * 5 4 3 34 34 H 1.08999 * 109.52131 * 297.49485 * 6 4 3 35 35 H 1.09000 * 109.52585 * 57.69052 * 6 4 3 36 36 H 1.08999 * 109.50931 * 62.28970 * 7 6 4 37 37 H 1.09004 * 109.50087 * 182.36469 * 7 6 4 38 38 H 1.09000 * 109.46163 * 299.16291 * 8 7 6 39 39 H 1.08997 * 109.46863 * 179.20044 * 8 7 6 40 40 H 1.08996 * 109.46833 * 168.32771 * 10 9 8 41 41 H 1.08996 * 109.47440 * 48.32164 * 10 9 8 42 42 H 1.08997 * 109.46905 * 185.41344 * 13 11 10 43 43 H 1.08996 * 109.46742 * 305.41319 * 13 11 10 44 44 H 1.09001 * 109.46903 * 65.41095 * 13 11 10 45 45 H 1.09000 * 109.46984 * 55.00171 * 14 11 10 46 46 H 1.09003 * 109.47092 * 294.99693 * 14 11 10 47 47 H 0.97003 * 119.99808 * 359.72740 * 18 17 15 48 48 H 1.08995 * 109.46047 * 181.75246 * 23 9 8 49 49 H 1.09004 * 109.46135 * 301.73476 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0821 0.7192 1.2465 6 6 4.0806 0.7255 -1.2534 7 6 5.6106 0.7825 -1.2766 8 6 6.0623 2.2442 -1.2395 9 7 5.5491 2.8858 -0.0224 10 6 6.0772 4.2496 0.1165 11 6 7.5608 4.1869 0.4848 12 1 8.0930 3.5848 -0.2516 13 6 8.1421 5.6022 0.5024 14 6 7.7163 3.5544 1.8693 15 6 9.1806 3.3802 2.1803 16 1 9.9257 3.6893 1.4623 17 6 9.5690 2.8253 3.3813 18 7 8.6615 2.4431 4.2532 19 14 11.3839 2.6087 3.7666 20 1 11.8939 3.8256 4.4481 21 1 11.5645 1.4320 4.6542 22 1 12.1361 2.3965 2.5039 23 6 4.0809 2.8852 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.7212 1.2322 2.1379 32 1 3.7180 -0.3081 1.2460 33 1 5.1721 0.7184 1.2441 34 1 3.7551 -0.3146 -1.2359 35 1 3.6843 1.2173 -2.1418 36 1 6.0076 0.2568 -0.4082 37 1 5.9786 0.3103 -2.1875 38 1 5.6765 2.7658 -2.1154 39 1 7.1514 2.2879 -1.2416 40 1 5.5300 4.7729 0.9005 41 1 5.9592 4.7827 -0.8269 42 1 9.2179 5.5509 0.6699 43 1 7.9459 6.0874 -0.4536 44 1 7.6766 6.1762 1.3036 45 1 7.2240 2.5821 1.8819 46 1 7.2605 4.2023 2.6181 47 1 7.7190 2.5553 4.0529 48 1 3.7308 3.3943 0.8974 49 1 3.7043 3.4037 -0.8823 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663893215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:27 Heat of formation + Delta-G solvation = -44.737231 kcal Electronic energy + Delta-G solvation = -22002.579369 eV Core-core repulsion = 19155.601927 eV Total energy + Delta-G solvation = -2846.977443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.75677 -36.67739 -34.64529 -32.79366 -31.53962 -31.38930 -26.84060 -26.56534 -26.32463 -25.91046 -23.30921 -22.40206 -22.11974 -20.62313 -18.93589 -18.05553 -16.59472 -15.84516 -15.28818 -14.72954 -14.50331 -14.31005 -13.92644 -13.76231 -13.61874 -13.27981 -13.17880 -12.86710 -12.61501 -11.99834 -11.82122 -11.66634 -11.61408 -11.54235 -11.32185 -11.22857 -11.02995 -10.97260 -10.91409 -10.67825 -10.49268 -10.40464 -10.23247 -10.04866 -9.98167 -9.74557 -9.65948 -9.23258 -8.31802 -8.15321 -7.76886 -6.18457 -3.84944 3.50386 3.54341 3.69722 4.20235 4.66274 4.69937 4.84309 4.86752 5.04433 5.12280 5.21135 5.36879 5.45412 5.56498 5.57691 5.61784 5.62742 5.69526 5.73287 5.76192 5.81891 5.85921 5.88123 5.97363 6.02465 6.04296 6.07199 6.12791 6.20428 6.23758 6.24651 6.27606 6.35983 6.41081 6.46648 6.47637 6.57955 6.87036 6.94321 7.01169 7.22890 7.54202 7.56557 7.71976 7.90664 8.43711 8.66669 9.08627 9.85953 11.22304 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.004588 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.290132 B = 6100.763082 C = 6615.869926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.056 4.056 5 C -0.135 4.135 6 C -0.107 4.107 7 C -0.119 4.119 8 C 0.058 3.942 9 N -0.523 5.523 10 C 0.064 3.936 11 C -0.076 4.076 12 H 0.056 0.944 13 C -0.131 4.131 14 C 0.025 3.975 15 C -0.593 4.593 16 H 0.044 0.956 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 1.066 2.934 20 H -0.291 1.291 21 H -0.286 1.286 22 H -0.291 1.291 23 C 0.069 3.931 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.018 0.982 42 H 0.061 0.939 43 H 0.028 0.972 44 H 0.044 0.956 45 H 0.025 0.975 46 H -0.003 1.003 47 H 0.270 0.730 48 H 0.070 0.930 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 -2.426 -11.527 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.146 4.146 4 C -0.056 4.056 5 C -0.192 4.192 6 C -0.145 4.145 7 C -0.157 4.157 8 C -0.070 4.070 9 N -0.246 5.246 10 C -0.063 4.063 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.189 4.189 14 C -0.012 4.012 15 C -0.632 4.632 16 H 0.062 0.938 17 C -0.190 4.190 18 N -0.555 5.555 19 Si 0.896 3.104 20 H -0.218 1.218 21 H -0.212 1.212 22 H -0.217 1.217 23 C -0.060 4.060 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.016 0.984 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.125 -3.245 -9.980 16.036 hybrid contribution -1.346 1.180 -1.883 2.598 sum -13.472 -2.065 -11.864 18.069 Atomic orbital electron populations 1.21784 0.96368 1.01256 1.01536 1.21626 0.95186 0.97232 1.02359 1.21622 0.94657 0.96714 1.01560 1.20563 0.93788 0.95033 0.96217 1.21834 1.03124 0.98438 0.95802 1.21663 0.95853 1.00116 0.96858 1.21636 0.95456 0.96538 1.02080 1.22072 1.00645 0.94348 0.89929 1.61756 1.06454 1.19141 1.37269 1.22250 0.97936 0.87756 0.98407 1.21085 0.91497 0.95954 1.00926 0.92548 1.21687 1.01999 0.96513 0.98694 1.19148 0.96693 0.95679 0.89726 1.22137 0.92297 1.44273 1.04497 0.93750 1.25705 1.06035 0.94084 0.93206 1.70721 1.02539 1.45227 1.37049 0.83592 0.74800 0.76632 0.75422 1.21751 1.21185 1.21706 1.22089 0.88292 0.95711 0.99860 0.92879 0.93087 0.93046 0.91939 0.91498 0.92022 0.92547 0.93190 0.93543 0.90551 0.91894 0.92894 0.90459 0.92184 0.96072 0.90301 0.91681 0.96423 0.91975 0.95291 0.93671 0.95714 0.98431 0.91993 0.91180 0.95964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.13 -1.22 5.23 -26.73 -0.14 -1.36 16 3 C -0.11 -1.14 4.27 -26.73 -0.11 -1.26 16 4 C -0.06 -0.70 0.54 -154.43 -0.08 -0.78 16 5 C -0.13 -1.93 7.68 37.16 0.29 -1.65 16 6 C -0.11 -1.28 4.37 -26.61 -0.12 -1.40 16 7 C -0.12 -1.62 5.74 -26.65 -0.15 -1.77 16 8 C 0.06 0.89 5.30 -3.83 -0.02 0.87 16 9 N -0.52 -8.76 3.28 -234.68 -0.77 -9.53 16 10 C 0.06 1.14 4.36 -3.83 -0.02 1.12 16 11 C -0.08 -1.58 2.35 -90.62 -0.21 -1.79 16 12 H 0.06 1.21 6.48 -51.93 -0.34 0.88 16 13 C -0.13 -2.55 8.91 37.16 0.33 -2.21 16 14 C 0.02 0.63 3.71 -27.88 -0.10 0.53 16 15 C -0.59 -17.05 8.48 -34.44 -0.29 -17.35 16 16 H 0.04 1.26 7.06 -52.49 -0.37 0.89 16 17 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 18 N -0.92 -28.75 13.65 55.43 0.76 -27.99 16 19 Si 1.07 26.04 29.90 -169.99 -5.08 20.96 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.07 0.99 4.16 -3.83 -0.02 0.97 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 28 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 33 H 0.08 1.32 6.01 -51.93 -0.31 1.00 16 34 H 0.06 0.69 6.58 -51.93 -0.34 0.35 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.18 6.58 -51.93 -0.34 0.84 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 1.33 6.41 -51.93 -0.33 1.00 16 40 H 0.06 1.17 7.87 -51.93 -0.41 0.76 16 41 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 42 H 0.06 1.29 7.12 -51.93 -0.37 0.92 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.02 0.68 7.49 -51.93 -0.39 0.29 16 46 H 0.00 -0.07 8.01 -51.93 -0.42 -0.49 16 47 H 0.27 8.47 7.22 -40.82 -0.29 8.17 16 48 H 0.07 1.04 7.96 -51.93 -0.41 0.62 16 49 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -30.16 358.53 -9.69 -39.85 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -9.62 Total: -1.98 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -0.38 Total: -26.71 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.01 Total: -37.52 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.16 -9.69 -39.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663893215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.888 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds