Wall clock time and date at job start Mon Mar 30 2020 00:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99670 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99504 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21563 * 120.00283 * 359.72077 * 11 10 9 13 13 C 1.47694 * 119.99643 * 179.72383 * 11 10 9 14 14 C 1.39664 * 120.16579 * 359.72545 * 13 11 10 15 15 C 1.37857 * 119.87502 * 179.71988 * 14 13 11 16 16 C 1.38465 * 120.21921 * 0.55410 * 15 14 13 17 17 N 1.48009 * 119.83141 * 179.69562 * 16 15 14 18 18 O 1.21797 * 120.00164 * 180.02562 * 17 16 15 19 19 O 1.21796 * 120.00224 * 0.02749 * 17 16 15 20 20 C 1.38205 * 120.33612 * 359.71876 * 16 15 14 21 21 C 1.38321 * 120.11829 * 0.02562 * 20 16 15 22 22 F 1.35105 * 120.10712 * 179.97438 * 21 20 16 23 23 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 25 25 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 26 26 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 27 27 H 1.07998 * 120.06152 * 359.97438 * 14 13 11 28 28 H 1.07997 * 119.88935 * 180.27285 * 15 14 13 29 29 H 1.08004 * 119.93679 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5588 -5.1055 -0.0046 13 6 2.7138 -6.0058 -0.0086 14 6 4.0876 -5.7545 -0.0134 15 6 4.9783 -6.8068 -0.0121 16 6 4.5152 -8.1117 -0.0177 17 7 5.4790 -9.2349 -0.0231 18 8 5.0751 -10.3840 -0.0285 19 8 6.6761 -9.0103 -0.0222 20 6 3.1576 -8.3706 -0.0188 21 6 2.2517 -7.3254 -0.0148 22 9 0.9246 -7.5788 -0.0163 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8898 25 1 0.6241 -2.5567 0.8902 26 1 3.1569 -3.4353 0.0021 27 1 4.4516 -4.7377 -0.0139 28 1 6.0406 -6.6127 -0.0114 29 1 2.8035 -9.3910 -0.0227 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048446058.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:10 Heat of formation + Delta-G solvation = -58.174945 kcal Electronic energy + Delta-G solvation = -19192.950749 eV Core-core repulsion = 15613.172010 eV Total energy + Delta-G solvation = -3579.778740 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.069 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.21167 -42.49701 -40.08771 -38.38776 -36.87983 -34.58494 -32.95451 -32.13422 -31.36276 -28.07462 -26.79680 -23.76101 -23.60816 -22.41086 -20.46667 -19.84174 -19.02449 -18.32703 -17.86016 -16.88524 -16.68647 -16.19096 -16.06018 -15.29053 -15.08503 -14.59306 -14.56600 -13.97999 -13.47252 -13.07421 -12.92194 -12.37608 -12.12493 -12.06940 -11.85771 -11.51417 -11.42834 -11.13287 -11.01616 -10.47349 -10.03941 -9.64951 -9.55656 -9.51325 -8.92859 -8.19939 -6.31268 -4.39970 -0.73226 0.38108 0.79936 0.96891 2.43531 3.15061 3.20700 3.23338 3.37034 3.44210 3.56556 3.85763 4.09695 4.20541 4.30237 4.55348 4.75192 5.05024 5.05393 5.21851 5.32530 5.44136 5.79204 6.06372 7.02019 7.04350 7.28624 7.30981 7.43198 7.77372 8.23891 8.47914 8.72260 9.26924 10.78641 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.031824 B = 0.003956 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.630747 B = 7075.457981 C = 7939.933225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.694 5.694 11 C 0.531 3.469 12 O -0.525 6.525 13 C -0.105 4.105 14 C -0.060 4.060 15 C -0.071 4.071 16 C -0.007 4.007 17 N 0.027 4.973 18 O -0.154 6.154 19 O -0.149 6.149 20 C -0.104 4.104 21 C 0.160 3.840 22 F -0.095 7.095 23 H 0.268 0.732 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.392 0.608 27 H 0.165 0.835 28 H 0.166 0.834 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.227 -12.987 -0.033 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.588 4.588 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.342 5.342 11 C 0.314 3.686 12 O -0.403 6.403 13 C -0.109 4.109 14 C -0.079 4.079 15 C -0.091 4.091 16 C -0.090 4.090 17 N 0.549 4.451 18 O -0.370 6.370 19 O -0.367 6.367 20 C -0.124 4.124 21 C 0.138 3.862 22 F -0.073 7.073 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.226 0.774 27 H 0.182 0.818 28 H 0.183 0.817 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.632 -12.420 -0.024 15.126 hybrid contribution 0.870 0.635 -0.011 1.077 sum 9.502 -11.786 -0.035 15.139 Atomic orbital electron populations 1.69960 1.06143 1.27611 1.48196 1.24954 0.94953 0.99572 0.94430 0.86376 0.79588 0.82409 0.78321 1.20362 1.20894 1.19682 1.21152 0.93270 0.90179 1.54156 0.91743 1.19279 0.88137 0.81446 0.98340 1.46482 1.11600 1.05591 1.70561 1.17838 0.87691 0.83136 0.79942 1.90857 1.15294 1.84386 1.49742 1.21068 0.95572 0.94026 1.00269 1.21376 0.90349 1.00446 0.95758 1.21045 1.02941 0.88879 0.96190 1.20883 0.88782 0.87097 1.12196 1.43509 1.01732 1.02133 0.97759 1.94565 1.83711 1.05694 1.53078 1.94557 0.98241 1.91008 1.52863 1.20846 0.90164 1.01749 0.99607 1.17230 0.78911 0.91186 0.98887 1.91691 1.28750 1.94370 1.92492 0.92226 0.94887 0.94876 0.77419 0.81804 0.81678 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.78 13.29 55.43 0.74 -24.05 15 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.91 19.76 29.54 -169.99 -5.02 14.74 15 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 15 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 7 C -0.55 -13.84 9.28 -34.44 -0.32 -14.16 15 8 H 0.06 1.49 7.60 -52.49 -0.40 1.09 15 9 C 0.25 6.06 5.43 -5.19 -0.03 6.04 15 10 N -0.69 -12.97 5.50 -62.48 -0.34 -13.32 15 11 C 0.53 9.71 7.77 -12.40 -0.10 9.62 15 12 O -0.52 -11.88 15.34 5.31 0.08 -11.80 15 13 C -0.10 -1.40 5.88 -104.91 -0.62 -2.02 15 14 C -0.06 -0.57 9.54 -39.19 -0.37 -0.94 15 15 C -0.07 -0.62 9.53 -39.64 -0.38 -1.00 15 16 C -0.01 -0.07 6.85 -79.88 -0.55 -0.61 15 17 N 0.03 0.32 4.45 34.00 0.15 0.47 15 18 O -0.15 -1.92 18.43 -29.46 -0.54 -2.46 15 19 O -0.15 -1.79 18.43 -29.46 -0.54 -2.34 15 20 C -0.10 -1.09 9.52 -39.56 -0.38 -1.46 15 21 C 0.16 2.06 7.29 -38.96 -0.28 1.78 15 22 F -0.10 -1.46 15.55 2.25 0.04 -1.43 15 23 H 0.27 7.07 8.31 -40.82 -0.34 6.74 15 24 H 0.03 0.90 8.14 -51.92 -0.42 0.48 15 25 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.39 5.85 6.35 -40.82 -0.26 5.59 15 27 H 0.16 1.18 6.41 -52.49 -0.34 0.84 15 28 H 0.17 1.05 7.59 -52.49 -0.40 0.65 15 29 H 0.17 1.49 7.59 -52.48 -0.40 1.09 15 LS Contribution 278.53 15.07 4.20 4.20 Total: -1.00 -30.76 278.53 -6.14 -36.90 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -1.77 Total: 0.21 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -3.12 Total: -1.14 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.54 Total: -36.89 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -1.00 Total: -16.59 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.76 -6.14 -36.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048446058.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.275 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds