Wall clock time and date at job start Mon Mar 30 2020 00:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 116.99804 * 2 1 4 4 C 1.38830 * 120.01619 * 0.02562 * 3 2 1 5 5 C 1.38191 * 120.10686 * 179.97438 * 4 3 2 6 6 C 1.38142 * 120.12963 * 359.72771 * 5 4 3 7 7 C 1.38983 * 120.03093 * 0.54654 * 6 5 4 8 8 S 1.76199 * 120.05428 * 179.72414 * 7 6 5 9 9 C 1.81402 * 102.99902 * 359.73083 * 8 7 6 10 10 C 1.50702 * 109.47310 * 180.02562 * 9 8 7 11 11 O 1.21207 * 119.99714 * 359.72268 * 10 9 8 12 12 O 1.34314 * 119.99951 * 179.97438 * 10 9 8 13 13 C 1.34921 * 116.99938 * 179.72575 * 12 10 9 14 14 H 1.07996 * 119.99717 * 359.97438 * 13 12 10 15 15 C 1.38744 * 120.00031 * 179.97438 * 13 12 10 16 16 N 1.31446 * 120.00294 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00387 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.46895 * 60.00063 * 17 15 13 19 19 H 1.48490 * 109.47739 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47051 * 300.00683 * 17 15 13 21 21 C 1.38551 * 120.01803 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.47229 * 60.00341 * 1 2 3 23 23 H 1.09001 * 109.46945 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47025 * 299.99616 * 1 2 3 25 25 H 1.08006 * 119.94718 * 359.95520 * 4 3 2 26 26 H 1.07995 * 119.93768 * 179.97438 * 5 4 3 27 27 H 1.07999 * 119.98038 * 180.27797 * 6 5 4 28 28 H 1.08998 * 109.47075 * 59.99558 * 9 8 7 29 29 H 1.09001 * 109.46898 * 299.99812 * 9 8 7 30 30 H 0.96993 * 120.00267 * 180.02562 * 16 15 13 31 31 H 1.08006 * 120.06588 * 0.04330 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2901 2.3754 0.0005 5 6 1.9155 3.6077 0.0011 6 6 3.2947 3.6854 0.0068 7 6 4.0568 2.5231 0.0005 8 16 5.8161 2.6215 0.0004 9 6 6.1248 4.4091 0.0012 10 6 7.6104 4.6623 0.0006 11 8 8.3841 3.7294 0.0047 12 8 8.0769 5.9219 0.0005 13 6 9.4169 6.0787 0.0057 14 1 10.0619 5.2125 0.0100 15 6 9.9663 7.3527 0.0054 16 7 9.1813 8.4070 -0.0004 17 14 11.8216 7.5700 0.0133 18 1 12.4001 6.9296 -1.1953 19 1 12.1506 9.0180 0.0110 20 1 12.3892 6.9347 1.2297 21 6 3.4295 1.2839 -0.0005 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2115 2.3182 0.0002 26 1 1.3248 4.5118 0.0011 27 1 3.7809 4.6497 0.0117 28 1 5.6803 4.8541 0.8914 29 1 5.6802 4.8549 -0.8885 30 1 9.5654 9.2977 -0.0010 31 1 4.0191 0.3790 -0.0017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061550732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:48 Heat of formation + Delta-G solvation = -107.559584 kcal Electronic energy + Delta-G solvation = -16837.265240 eV Core-core repulsion = 13789.265447 eV Total energy + Delta-G solvation = -3047.999793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.08792 -41.00686 -38.33447 -37.40235 -34.37469 -32.16644 -32.07561 -30.73983 -28.12011 -27.36799 -24.00283 -23.20350 -22.37195 -19.97535 -19.66248 -18.61718 -17.47688 -17.17043 -17.11997 -17.01119 -16.64814 -16.44446 -16.09434 -15.00801 -14.86092 -14.68036 -14.42036 -14.33308 -13.78248 -13.62480 -13.08698 -13.06403 -12.67558 -12.41706 -12.17588 -12.15815 -12.12875 -12.02038 -11.25076 -11.19726 -10.75131 -10.70297 -9.36253 -8.58733 -8.54064 -6.39371 0.10046 0.13959 0.38124 1.22627 1.26603 1.34599 1.50246 1.56104 2.08156 2.38378 2.60359 2.64823 2.92620 3.81448 3.89941 4.04702 4.08029 4.18187 4.24990 4.43724 4.46272 4.49510 4.56656 4.75167 4.85861 5.11472 5.16447 5.27205 5.39579 5.61601 5.76373 6.41351 6.51973 6.85541 7.62139 8.61278 Molecular weight = 268.06amu Principal moments of inertia in cm(-1) A = 0.061113 B = 0.003311 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.058987 B = 8455.812604 C = 8893.415256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.138 3.862 4 C -0.210 4.210 5 C -0.056 4.056 6 C -0.185 4.185 7 C -0.066 4.066 8 S -0.063 6.063 9 C -0.094 4.094 10 C 0.411 3.589 11 O -0.565 6.565 12 O -0.233 6.233 13 C -0.424 4.424 14 H 0.084 0.916 15 C 0.000 4.000 16 N -0.899 5.899 17 Si 1.019 2.981 18 H -0.262 1.262 19 H -0.258 1.258 20 H -0.261 1.261 21 C -0.155 4.155 22 H 0.068 0.932 23 H 0.118 0.882 24 H 0.068 0.932 25 H 0.161 0.839 26 H 0.160 0.840 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.281 0.719 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.162 -9.550 0.007 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.091 3.909 4 C -0.231 4.231 5 C -0.075 4.075 6 C -0.209 4.209 7 C -0.179 4.179 8 S 0.181 5.819 9 C -0.242 4.242 10 C 0.257 3.743 11 O -0.463 6.463 12 O -0.141 6.141 13 C -0.499 4.499 14 H 0.102 0.898 15 C -0.201 4.201 16 N -0.536 5.536 17 Si 0.837 3.163 18 H -0.186 1.186 19 H -0.182 1.182 20 H -0.186 1.186 21 C -0.179 4.179 22 H 0.087 0.913 23 H 0.136 0.864 24 H 0.087 0.913 25 H 0.178 0.822 26 H 0.177 0.823 27 H 0.152 0.848 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.090 0.910 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.924 -10.546 0.007 20.796 hybrid contribution -0.177 1.186 0.000 1.199 sum -18.101 -9.361 0.007 20.378 Atomic orbital electron populations 1.23402 0.75985 1.05724 1.02604 1.86057 1.23859 1.26527 1.88482 1.18879 0.91343 0.85313 0.95373 1.21582 1.01495 0.91415 1.08611 1.21219 0.93295 0.98563 0.94433 1.21406 0.95566 0.96924 1.06984 1.21772 0.96708 0.96579 1.02853 1.86271 0.98670 1.05120 1.91837 1.23147 0.92627 0.98345 1.10131 1.23048 0.91389 0.82326 0.77538 1.90579 1.59803 1.44830 1.51093 1.83867 1.26454 1.27284 1.76455 1.21440 0.78461 0.94628 1.55412 0.89794 1.26549 1.06229 0.92961 0.94398 1.70053 1.38204 0.99100 1.46217 0.84674 0.73254 0.78546 0.79840 1.18598 1.18206 1.18581 1.19899 0.92445 0.96536 1.09068 0.91311 0.86363 0.91321 0.82169 0.82256 0.84846 0.84277 0.84293 0.90956 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.87 10.49 -92.42 -0.97 -7.84 16 3 C 0.14 3.16 6.68 22.49 0.15 3.31 16 4 C -0.21 -3.78 9.04 22.40 0.20 -3.57 16 5 C -0.06 -1.05 10.03 22.24 0.22 -0.82 16 6 C -0.18 -4.51 9.36 22.43 0.21 -4.30 16 7 C -0.07 -1.89 6.11 22.61 0.14 -1.76 16 8 S -0.06 -2.21 21.06 -56.49 -1.19 -3.40 16 9 C -0.09 -3.42 4.93 71.24 0.35 -3.07 16 10 C 0.41 20.69 7.92 71.24 0.56 21.25 16 11 O -0.57 -31.47 15.10 20.78 0.31 -31.15 16 12 O -0.23 -13.55 9.75 14.82 0.14 -13.40 16 13 C -0.42 -25.59 9.64 67.94 0.66 -24.93 16 14 H 0.08 5.14 6.86 -2.91 -0.02 5.12 16 15 C 0.00 -0.02 5.49 84.87 0.47 0.45 16 16 N -0.90 -52.31 13.67 21.62 0.30 -52.02 16 17 Si 1.02 43.02 29.55 68.60 2.03 45.04 16 18 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 21 C -0.15 -4.22 9.73 22.50 0.22 -4.00 16 22 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 23 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 25 H 0.16 1.76 6.29 -2.91 -0.02 1.75 16 26 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 27 H 0.13 3.04 5.87 -2.91 -0.02 3.03 16 28 H 0.14 4.39 7.73 -2.39 -0.02 4.37 16 29 H 0.14 4.38 7.76 -2.39 -0.02 4.36 16 30 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -74.34 292.09 6.07 -68.27 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.16 Total: 10.67 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 4.29 Total: -16.16 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.30 Total: -52.02 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -0.51 Total: -52.40 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -1.19 Total: -3.40 kcal Total: -74.34 6.07 -68.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061550732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.290 kcal (2) G-P(sol) polarization free energy of solvation -74.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds