Wall clock time and date at job start Mon Mar 30 2020 00:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99718 * 2 1 4 4 H 1.48497 * 109.47558 * 270.00041 * 3 2 1 5 5 H 1.48498 * 109.47513 * 30.00682 * 3 2 1 6 6 H 1.48509 * 109.46785 * 150.00520 * 3 2 1 7 7 C 1.37877 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99663 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00284 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47210 * 180.02562 * 9 7 2 11 11 C 1.35416 * 119.46858 * 90.00474 * 10 9 7 12 12 C 1.35777 * 121.24956 * 179.97438 * 11 10 9 13 13 N 1.48029 * 119.93288 * 180.02562 * 12 11 10 14 14 O 1.21803 * 119.99705 * 359.97438 * 13 12 11 15 15 O 1.21799 * 120.00092 * 179.72488 * 13 12 11 16 16 C 1.39437 * 120.13807 * 0.29130 * 12 11 10 17 17 C 1.39417 * 118.94853 * 359.48534 * 16 12 11 18 18 C 1.46917 * 120.59422 * 180.21886 * 17 16 12 19 19 O 1.21573 * 120.00078 * 0.27253 * 18 17 16 20 20 O 1.34822 * 120.00603 * 180.27541 * 18 17 16 21 21 C 1.34657 * 119.46835 * 270.02642 * 10 9 7 22 22 O 1.21876 * 120.10790 * 0.02562 * 21 10 9 23 23 H 0.97003 * 119.99748 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46877 * 60.00842 * 9 7 2 25 25 H 1.09001 * 109.47794 * 300.00676 * 9 7 2 26 26 H 1.08007 * 119.37379 * 359.97438 * 11 10 9 27 27 H 1.07998 * 120.52094 * 179.73106 * 16 12 11 28 28 H 0.96698 * 117.00784 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6359 -4.1191 1.1784 12 6 3.5174 -5.1509 1.2206 13 7 3.9707 -5.6822 2.5258 14 8 3.5533 -5.1934 3.5604 15 8 4.7576 -6.6111 2.5651 16 6 4.0008 -5.7076 0.0371 17 6 3.5561 -5.1949 -1.1807 18 6 4.0381 -5.7573 -2.4495 19 8 4.8281 -6.6813 -2.4437 20 8 3.6045 -5.2486 -3.6204 21 6 2.6339 -4.1158 -1.1729 22 8 2.2336 -3.6461 -2.2238 23 1 -0.4850 0.8401 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.2730 -3.6941 2.1027 27 1 4.7054 -6.5256 0.0635 28 1 3.9494 -5.6517 -4.4288 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071873553.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:47 Heat of formation + Delta-G solvation = -95.417183 kcal Electronic energy + Delta-G solvation = -20056.722928 eV Core-core repulsion = 16462.956455 eV Total energy + Delta-G solvation = -3593.766474 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.062 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.23288 -41.30670 -39.72506 -37.16096 -36.45802 -35.92425 -35.00849 -32.95992 -31.11325 -28.45843 -26.18875 -25.67835 -24.30329 -22.18948 -21.57677 -19.38150 -19.01284 -18.09221 -17.53271 -17.21943 -17.08379 -16.88270 -16.24771 -15.81922 -15.55766 -14.97700 -14.34505 -13.72219 -13.43736 -12.83076 -12.80805 -12.26015 -12.07903 -11.56752 -11.47574 -11.40692 -11.18812 -11.05365 -11.03720 -10.75843 -10.73878 -10.62839 -9.88269 -9.71853 -8.91118 -8.45325 -6.55448 -4.66492 0.04853 0.29466 1.32114 1.75604 2.39231 2.68662 3.07286 3.08336 3.14623 3.17132 3.52286 4.06761 4.12732 4.32296 4.43769 4.82249 4.90505 5.02181 5.45469 5.64242 6.00306 6.24935 6.42701 6.51569 6.61827 7.01915 7.32066 7.48274 7.76589 7.89690 7.98403 8.34639 9.02851 10.53066 Molecular weight = 268.06amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.007120 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.647859 B = 3931.426501 C = 5268.451135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.554 4.554 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.445 5.445 11 C 0.294 3.706 12 C -0.201 4.201 13 N 0.061 4.939 14 O -0.173 6.173 15 O -0.171 6.171 16 C 0.100 3.900 17 C -0.266 4.266 18 C 0.556 3.444 19 O -0.527 6.527 20 O -0.484 6.484 21 C 0.527 3.473 22 O -0.463 6.463 23 H 0.273 0.727 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.198 0.802 27 H 0.170 0.830 28 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 -7.985 0.496 8.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.132 4.132 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.592 4.592 8 H 0.085 0.915 9 C 0.093 3.907 10 N -0.144 5.144 11 C 0.145 3.855 12 C -0.292 4.292 13 N 0.575 4.425 14 O -0.385 6.385 15 O -0.383 6.383 16 C 0.078 3.922 17 C -0.273 4.273 18 C 0.402 3.598 19 O -0.419 6.419 20 O -0.292 6.292 21 C 0.323 3.677 22 O -0.336 6.336 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.215 0.785 27 H 0.188 0.812 28 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.314 -7.255 -0.606 7.999 hybrid contribution 0.781 0.522 -0.100 0.945 sum 4.095 -6.733 -0.706 7.912 Atomic orbital electron populations 1.69894 1.06130 1.28373 1.47312 1.24901 0.95044 0.99696 0.93534 0.86265 0.79640 0.81612 0.78730 1.20022 1.20549 1.19481 1.21101 0.93537 0.89096 1.55462 0.91528 1.20497 0.87126 0.81017 1.02023 1.46720 1.34835 1.28290 1.04601 1.22116 0.84382 0.85498 0.93458 1.19626 1.15562 1.09285 0.84695 1.42861 0.98640 0.99252 1.01716 1.94553 1.59931 1.62095 1.21876 1.94539 1.29932 1.20039 1.93808 1.21400 0.89772 0.93071 0.87969 1.19746 1.10405 1.05530 0.91571 1.19593 0.77225 0.79195 0.83803 1.90908 1.33959 1.28769 1.88239 1.84858 1.67485 1.61001 1.15896 1.17005 0.82960 0.83884 0.83837 1.91021 1.55215 1.58956 1.28430 0.91731 0.90530 0.91873 0.78533 0.81248 0.73503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.72 13.29 55.43 0.74 -21.99 15 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 3 Si 0.91 19.50 29.54 -169.99 -5.02 14.48 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 6 H -0.27 -5.71 7.11 56.52 0.40 -5.30 15 7 C -0.55 -13.37 9.38 -34.44 -0.32 -13.69 15 8 H 0.07 1.62 7.81 -52.48 -0.41 1.21 15 9 C 0.21 4.43 5.07 -5.20 -0.03 4.40 15 10 N -0.44 -7.92 2.56 -120.61 -0.31 -8.22 15 11 C 0.29 4.24 9.78 -16.85 -0.16 4.08 15 12 C -0.20 -2.85 6.81 -80.38 -0.55 -3.39 15 13 N 0.06 0.91 4.45 33.75 0.15 1.06 15 14 O -0.17 -2.62 18.38 -29.46 -0.54 -3.17 15 15 O -0.17 -2.63 18.48 -29.46 -0.54 -3.17 15 16 C 0.10 1.42 9.19 -38.70 -0.36 1.07 15 17 C -0.27 -4.31 5.92 -104.53 -0.62 -4.93 15 18 C 0.56 8.84 8.25 34.24 0.28 9.12 15 19 O -0.53 -8.77 17.17 -19.32 -0.33 -9.10 15 20 O -0.48 -7.05 11.63 -48.03 -0.56 -7.61 15 21 C 0.53 9.94 7.44 -14.90 -0.11 9.83 15 22 O -0.46 -10.28 14.76 -16.44 -0.24 -10.52 15 23 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 24 H 0.08 1.82 7.38 -51.93 -0.38 1.43 15 25 H 0.06 1.26 8.00 -51.93 -0.42 0.85 15 26 H 0.20 2.38 7.47 -52.48 -0.39 1.99 15 27 H 0.17 2.18 7.30 -52.49 -0.38 1.80 15 28 H 0.41 3.56 9.11 45.56 0.42 3.97 15 LS Contribution 274.26 15.07 4.13 4.13 Total: -1.00 -29.47 274.26 -5.19 -34.66 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -0.70 Total: 1.23 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.96 Total: 8.22 kcal Atomic # 7 Polarization: -29.73 SS G_CDS: 0.58 Total: -29.15 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -2.22 Total: -33.57 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.47 -5.19 -34.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071873553.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.753 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds