Wall clock time and date at job start Mon Mar 30 2020 01:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46983 * 2 1 4 4 O 1.42904 * 109.47161 * 240.00229 * 2 1 3 5 5 C 1.35676 * 116.99596 * 275.20901 * 4 2 1 6 6 C 1.39137 * 119.91578 * 5.41815 * 5 4 2 7 7 C 1.37601 * 120.10917 * 179.76776 * 6 5 4 8 8 C 1.39970 * 119.92398 * 0.50867 * 7 6 5 9 9 C 1.47572 * 120.08703 * 179.76782 * 8 7 6 10 10 O 1.21824 * 119.99784 * 179.97438 * 9 8 7 11 11 C 1.41737 * 119.99854 * 359.97438 * 9 8 7 12 12 H 1.08004 * 120.00423 * 0.02562 * 11 9 8 13 13 C 1.40350 * 119.99919 * 180.02562 * 11 9 8 14 14 N 1.30527 * 119.99853 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00032 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47229 * 59.99748 * 15 13 11 17 17 H 1.48500 * 109.47200 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47393 * 300.00180 * 15 13 11 19 19 C 1.39923 * 119.82466 * 359.74743 * 8 7 6 20 20 C 1.37708 * 119.89358 * 359.97438 * 19 8 7 21 21 Cl 1.73596 * 119.96475 * 179.97438 * 20 19 8 22 22 H 1.09006 * 109.47154 * 60.00101 * 1 2 3 23 23 H 1.09001 * 109.47301 * 299.99822 * 1 2 3 24 24 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46779 * 120.00104 * 2 1 3 26 26 H 1.09001 * 109.47353 * 60.00333 * 3 2 1 27 27 H 1.09004 * 109.47301 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47448 * 299.99694 * 3 2 1 29 29 H 1.08002 * 119.94404 * 0.02562 * 6 5 4 30 30 H 1.07998 * 120.03389 * 180.25676 * 7 6 5 31 31 H 0.96996 * 119.99856 * 180.02562 * 14 13 11 32 32 H 1.08004 * 120.05459 * 180.02562 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.1082 -2.0249 -1.0995 6 6 1.6501 -2.6999 0.0276 7 6 1.7470 -4.0707 0.0982 8 6 2.3172 -4.7858 -0.9614 9 6 2.4276 -6.2555 -0.8874 10 8 2.9237 -6.8763 -1.8108 11 6 1.9565 -6.9448 0.2580 12 1 1.5163 -6.3944 1.0764 13 6 2.0620 -8.3425 0.3286 14 7 2.5944 -9.0076 -0.6602 15 14 1.4404 -9.2510 1.8378 16 1 -0.0118 -8.9917 2.0085 17 1 1.6656 -10.7087 1.6658 18 1 2.1726 -8.7748 3.0388 19 6 2.7818 -4.1034 -2.0912 20 6 2.6759 -2.7320 -2.1565 21 17 3.2523 -1.8835 -3.5570 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.2139 -2.1474 0.8468 30 1 1.3873 -4.5938 0.9718 31 1 2.6670 -9.9736 -0.6116 32 1 3.2220 -4.6516 -2.9111 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106679572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:09 Heat of formation + Delta-G solvation = -90.775184 kcal Electronic energy + Delta-G solvation = -17675.378053 eV Core-core repulsion = 14626.062379 eV Total energy + Delta-G solvation = -3049.315674 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34453 -39.44895 -37.95005 -37.16184 -34.79350 -34.13699 -31.89171 -31.15222 -28.63154 -28.10389 -24.87954 -23.91714 -22.32109 -21.21659 -19.38937 -18.69610 -17.58354 -17.04022 -16.49960 -16.18840 -15.78875 -15.26731 -15.15676 -14.76598 -14.66859 -14.20957 -13.77964 -13.42725 -13.38140 -13.21638 -13.07911 -12.88643 -12.74454 -12.59258 -12.26220 -12.15427 -12.05923 -11.86603 -11.63078 -11.50230 -10.96497 -9.89866 -9.64486 -9.09457 -8.34800 -7.08067 0.06561 0.20493 1.14353 1.40904 1.42191 1.56270 2.09748 2.14925 2.22449 2.73002 3.70969 3.76152 3.81481 3.94262 4.07016 4.16241 4.22331 4.36054 4.44248 4.73890 4.74907 4.85585 4.90067 4.94032 5.04157 5.11993 5.26543 5.28394 5.34097 5.58092 5.65154 5.95989 6.36599 6.69315 6.78032 8.23996 8.48859 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.005145 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.413024 B = 5440.505740 C = 6459.066555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 C -0.144 4.144 4 O -0.310 6.310 5 C 0.145 3.855 6 C -0.196 4.196 7 C -0.043 4.043 8 C -0.165 4.165 9 C 0.364 3.636 10 O -0.599 6.599 11 C -0.539 4.539 12 H 0.102 0.898 13 C 0.022 3.978 14 N -0.787 5.787 15 Si 0.997 3.003 16 H -0.249 1.249 17 H -0.273 1.273 18 H -0.249 1.249 19 C -0.059 4.059 20 C -0.088 4.088 21 Cl -0.064 7.064 22 H 0.062 0.938 23 H 0.098 0.902 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.174 0.826 30 H 0.152 0.848 31 H 0.282 0.718 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 17.252 6.961 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.006 3.994 3 C -0.200 4.200 4 O -0.224 6.224 5 C 0.097 3.903 6 C -0.214 4.214 7 C -0.061 4.061 8 C -0.166 4.166 9 C 0.264 3.736 10 O -0.494 6.494 11 C -0.569 4.569 12 H 0.120 0.880 13 C -0.197 4.197 14 N -0.416 5.416 15 Si 0.815 3.185 16 H -0.173 1.173 17 H -0.198 1.198 18 H -0.173 1.173 19 C -0.078 4.078 20 C -0.115 4.115 21 Cl -0.035 7.035 22 H 0.081 0.919 23 H 0.117 0.883 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.191 0.809 30 H 0.169 0.831 31 H 0.093 0.907 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.404 17.089 6.129 18.681 hybrid contribution 0.048 -0.761 -0.054 0.765 sum -4.356 16.328 6.075 17.957 Atomic orbital electron populations 1.22395 0.93902 1.03079 1.04183 1.22893 0.95416 0.94473 0.86613 1.21869 1.01855 0.92186 1.04139 1.86130 1.80830 1.14653 1.40757 1.18805 0.94748 0.83780 0.92925 1.21483 1.06663 0.94572 0.98732 1.21559 0.93645 0.93318 0.97572 1.21442 1.02002 0.98050 0.95142 1.18749 0.80613 0.85869 0.88327 1.90465 1.47225 1.69997 1.41739 1.21425 1.37562 0.93287 1.04592 0.88024 1.27318 0.92769 0.99019 1.00595 1.70108 1.29964 1.09231 1.32297 0.85074 0.80089 0.76602 0.76734 1.17285 1.19770 1.17253 1.20966 0.97303 0.91263 0.98275 1.20076 1.08930 0.91341 0.91169 1.98307 1.87707 1.77424 1.40089 0.91899 0.88286 0.92582 0.89650 0.87819 0.92187 0.91756 0.80879 0.83071 0.90732 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 9.16 71.98 0.66 -2.14 16 2 C 0.06 1.13 2.84 30.59 0.09 1.22 16 3 C -0.14 -2.01 9.56 71.98 0.69 -1.32 16 4 O -0.31 -8.57 9.24 -89.93 -0.83 -9.40 16 5 C 0.14 4.71 6.61 22.73 0.15 4.86 16 6 C -0.20 -5.86 8.21 22.34 0.18 -5.68 16 7 C -0.04 -1.59 9.43 22.54 0.21 -1.37 16 8 C -0.16 -7.82 5.89 -19.99 -0.12 -7.94 16 9 C 0.36 21.23 6.91 25.60 0.18 21.41 16 10 O -0.60 -40.39 14.89 -4.74 -0.07 -40.46 16 11 C -0.54 -29.15 8.85 23.65 0.21 -28.94 16 12 H 0.10 4.71 6.01 -2.91 -0.02 4.69 16 13 C 0.02 1.17 5.50 85.40 0.47 1.64 16 14 N -0.79 -46.30 11.73 21.89 0.26 -46.04 16 15 Si 1.00 37.86 29.56 68.60 2.03 39.89 16 16 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 17 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 18 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 19 C -0.06 -2.66 9.37 22.55 0.21 -2.45 16 20 C -0.09 -3.35 6.33 22.39 0.14 -3.21 16 21 Cl -0.06 -2.18 28.49 -2.72 -0.08 -2.26 16 22 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.01 6.88 -2.39 -0.02 1.00 16 25 H 0.09 1.42 6.31 -2.39 -0.02 1.40 16 26 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.17 3.67 5.40 -2.91 -0.02 3.65 16 30 H 0.15 5.10 6.19 -2.91 -0.02 5.09 16 31 H 0.28 14.86 8.29 -92.71 -0.77 14.09 16 32 H 0.12 5.71 7.65 -2.91 -0.02 5.69 16 Total: -1.00 -72.98 291.33 5.53 -67.45 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.15 Total: 14.73 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 3.07 Total: -23.91 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.26 Total: -46.04 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -0.90 Total: -49.86 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.08 Total: -2.26 kcal Total: -72.98 5.53 -67.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106679572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.325 kcal (2) G-P(sol) polarization free energy of solvation -72.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds