Wall clock time and date at job start Mon Mar 30 2020 01:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.34773 * 119.99909 * 275.00159 * 4 2 1 6 6 O 1.21699 * 120.00281 * 0.02562 * 5 4 2 7 7 C 1.46585 * 119.99867 * 180.02562 * 5 4 2 8 8 C 1.36653 * 125.45986 * 180.02562 * 7 5 4 9 9 C 1.37474 * 113.29891 * 179.97438 * 8 7 5 10 10 C 1.33809 * 115.09910 * 359.97438 * 9 8 7 11 11 S 1.70618 * 110.95665 * 359.72495 * 10 9 8 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.21296 * 120.00078 * 240.00186 * 12 2 1 14 14 N 1.34777 * 120.00369 * 59.99719 * 12 2 1 15 15 C 1.37097 * 120.00219 * 180.02562 * 14 12 2 16 16 H 1.08006 * 120.00070 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99977 * 180.02562 * 15 14 12 18 18 N 1.31402 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99747 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47431 * 59.99905 * 19 17 15 21 21 H 1.48503 * 109.46954 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47490 * 299.99855 * 19 17 15 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 27 27 H 1.08003 * 123.34649 * 359.97013 * 8 7 5 28 28 H 1.07995 * 122.44619 * 180.02562 * 9 8 7 29 29 H 1.08003 * 124.52301 * 180.02562 * 10 9 8 30 30 H 0.96995 * 119.99691 * 359.97438 * 14 12 2 31 31 H 0.97006 * 120.00262 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8571 1.1623 2.4119 7 6 2.6361 -0.7093 3.5538 8 6 2.8085 -0.1391 4.7836 9 6 3.2804 -1.0183 5.7293 10 6 3.4874 -2.2656 5.2915 11 16 3.0862 -2.4068 3.6392 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6965 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1634 -0.8962 -3.5740 16 1 2.7844 -1.7744 -3.4750 17 6 1.8282 -0.4211 -4.8360 18 7 1.0731 0.6475 -4.9565 19 14 2.4509 -1.3016 -6.3612 20 1 1.9555 -2.7016 -6.3617 21 1 1.9559 -0.6015 -7.5737 22 1 3.9360 -1.3021 -6.3610 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 2.2491 -1.6318 1.1525 27 1 2.5952 0.8990 4.9919 28 1 3.4693 -0.7238 6.7510 29 1 3.8545 -3.0762 5.9036 30 1 1.1489 0.5386 -2.5435 31 1 0.8393 0.9795 -5.8375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126812260.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:29 Heat of formation + Delta-G solvation = -44.926256 kcal Electronic energy + Delta-G solvation = -17483.787468 eV Core-core repulsion = 14470.796410 eV Total energy + Delta-G solvation = -3012.991057 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82654 -38.36656 -37.39154 -34.67771 -33.91269 -31.69506 -30.70899 -29.19736 -25.39668 -25.14243 -23.36684 -21.16096 -19.73521 -19.07992 -18.60594 -18.01999 -16.19312 -16.00659 -15.45907 -15.09048 -14.85349 -14.38941 -14.01642 -13.84052 -13.40877 -12.97898 -12.87955 -12.71856 -12.43025 -12.05293 -11.80047 -11.63341 -11.18753 -11.06184 -11.01625 -10.49811 -10.31041 -9.93217 -9.61760 -9.11845 -8.88857 -8.70999 -8.46228 -8.09229 -6.50960 -3.92803 0.43615 1.38378 1.79724 2.31776 3.13990 3.20599 3.22473 3.28898 3.32458 3.74840 4.11155 4.79855 4.79985 4.94120 5.16203 5.18349 5.34405 5.55470 5.65055 5.81262 5.86367 6.02882 6.10479 6.18697 6.23248 6.50174 6.65825 7.46318 7.69790 7.92370 8.31861 8.46561 9.05173 9.39942 9.88215 10.65862 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.039808 B = 0.004012 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.216203 B = 6977.233736 C = 7479.516033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 H 0.103 0.897 4 N -0.697 5.697 5 C 0.588 3.412 6 O -0.537 6.537 7 C -0.259 4.259 8 C -0.063 4.063 9 C -0.151 4.151 10 C -0.239 4.239 11 S 0.215 5.785 12 C 0.431 3.569 13 O -0.595 6.595 14 N -0.547 5.547 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.027 3.973 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.406 0.594 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.167 0.833 30 H 0.395 0.605 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 -3.479 16.629 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.120 0.880 4 N -0.349 5.349 5 C 0.374 3.626 6 O -0.416 6.416 7 C -0.379 4.379 8 C -0.096 4.096 9 C -0.182 4.182 10 C -0.377 4.377 11 S 0.482 5.518 12 C 0.217 3.783 13 O -0.482 6.482 14 N -0.181 5.181 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.176 4.176 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.243 0.757 27 H 0.171 0.829 28 H 0.161 0.839 29 H 0.185 0.815 30 H 0.229 0.771 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.126 -4.408 15.459 16.114 hybrid contribution 0.117 0.771 0.293 0.833 sum 1.243 -3.637 15.751 16.214 Atomic orbital electron populations 1.22112 0.93708 1.02698 1.02933 1.20720 0.94971 0.97627 0.84291 0.87950 1.45618 1.66189 1.14601 1.08523 1.16914 0.77707 0.86138 0.81834 1.90806 1.51113 1.14897 1.84766 1.24727 1.15423 0.98678 0.99093 1.20784 0.97088 1.01442 0.90274 1.20020 1.04218 0.92570 1.01426 1.25365 1.08894 1.02295 1.01146 1.83358 1.58212 1.05825 1.04413 1.19716 0.86487 0.87745 0.84398 1.90504 1.42841 1.28701 1.86109 1.41790 1.44924 1.27376 1.04049 1.19692 1.29767 1.11091 0.82956 0.87734 1.25310 0.96573 0.96345 0.99401 1.69601 1.35934 1.22489 1.25487 0.85880 0.79198 0.79175 0.79757 1.19778 1.20858 1.19777 0.92091 0.91849 0.90642 0.75685 0.82924 0.83890 0.81515 0.77054 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.38 37.16 0.35 -2.23 16 2 C 0.13 2.51 2.98 -69.08 -0.21 2.30 16 3 H 0.10 1.97 7.58 -51.93 -0.39 1.57 16 4 N -0.70 -12.25 4.95 -56.27 -0.28 -12.53 16 5 C 0.59 10.04 7.75 -12.90 -0.10 9.94 16 6 O -0.54 -10.44 16.50 5.19 0.09 -10.35 16 7 C -0.26 -3.60 6.45 -36.79 -0.24 -3.84 16 8 C -0.06 -0.75 10.01 -40.43 -0.40 -1.16 16 9 C -0.15 -1.44 10.15 -41.41 -0.42 -1.87 16 10 C -0.24 -2.19 10.92 29.18 0.32 -1.87 16 11 S 0.21 2.40 22.16 -107.50 -2.38 0.02 16 12 C 0.43 10.03 7.17 -10.99 -0.08 9.95 16 13 O -0.60 -15.45 15.41 5.54 0.09 -15.36 16 14 N -0.55 -13.57 5.18 -10.96 -0.06 -13.62 16 15 C -0.31 -8.30 9.68 -14.93 -0.14 -8.45 16 16 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 18 N -0.90 -23.78 13.05 55.50 0.72 -23.06 16 19 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.07 1.22 7.56 -51.93 -0.39 0.82 16 26 H 0.41 6.96 6.90 -40.82 -0.28 6.68 16 27 H 0.15 1.74 8.06 -52.48 -0.42 1.31 16 28 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 29 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.40 9.42 7.32 -40.82 -0.30 9.12 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -30.96 293.40 -6.44 -37.39 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -2.99 Total: 14.22 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.02 Total: 3.39 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.39 Total: -49.21 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.17 Total: -25.71 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.38 Total: 0.02 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.96 -6.44 -37.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126812260.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.534 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds