Wall clock time and date at job start Mon Mar 30 2020 01:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34810 * 116.99686 * 2 1 4 4 O 1.21521 * 120.00476 * 0.02562 * 3 2 1 5 5 C 1.47179 * 119.99396 * 180.02562 * 3 2 1 6 6 C 1.36643 * 125.80169 * 180.02562 * 5 3 2 7 7 C 1.40031 * 106.92369 * 179.97438 * 6 5 3 8 8 C 1.36637 * 106.93005 * 359.97438 * 7 6 5 9 9 C 1.47171 * 125.80952 * 179.97438 * 8 7 6 10 10 O 1.21533 * 119.99792 * 0.02562 * 9 8 7 11 11 O 1.34817 * 120.00308 * 180.27409 * 9 8 7 12 12 C 1.45201 * 117.00168 * 179.72445 * 11 9 8 13 13 H 1.08999 * 109.46686 * 30.00369 * 12 11 9 14 14 C 1.52999 * 109.47086 * 270.00340 * 12 11 9 15 15 C 1.50694 * 109.46864 * 150.00394 * 12 11 9 16 16 H 1.08004 * 120.00484 * 0.02562 * 15 12 11 17 17 C 1.37883 * 119.99964 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99739 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 119.99885 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46884 * 90.00405 * 19 17 15 21 21 H 1.48500 * 109.46955 * 210.00060 * 19 17 15 22 22 H 1.48498 * 109.47243 * 330.00133 * 19 17 15 23 23 O 1.34557 * 125.81119 * 0.26369 * 5 3 2 24 24 H 1.08996 * 109.47054 * 59.99807 * 1 2 3 25 25 H 1.08997 * 109.46999 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46978 * 299.99379 * 1 2 3 27 27 H 1.08003 * 126.54105 * 359.97438 * 6 5 3 28 28 H 1.08003 * 126.53244 * 179.97438 * 7 6 5 29 29 H 1.08993 * 109.47361 * 60.00060 * 14 12 11 30 30 H 1.08999 * 109.46960 * 180.02562 * 14 12 11 31 31 H 1.09006 * 109.46997 * 300.00157 * 14 12 11 32 32 H 0.96999 * 119.99775 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4022 2.2204 0.0005 5 6 3.5338 1.2782 -0.0006 6 6 4.2741 2.4267 -0.0001 7 6 5.6210 2.0435 -0.0004 8 6 5.6460 0.6773 -0.0003 9 6 6.8550 -0.1617 -0.0010 10 8 7.9543 0.3565 -0.0013 11 8 6.7432 -1.5053 -0.0065 12 6 7.9778 -2.2695 -0.0131 13 1 8.7565 -1.7062 0.5011 14 6 8.4076 -2.5317 -1.4579 15 6 7.7591 -3.5831 0.6921 16 1 6.7892 -3.8202 1.1038 17 6 8.7974 -4.4825 0.8119 18 7 9.9784 -4.1941 0.3103 19 14 8.5264 -6.1106 1.6868 20 1 8.0833 -7.1325 0.7047 21 1 9.7961 -6.5499 2.3194 22 1 7.4846 -5.9437 2.7318 23 8 4.3771 0.2296 -0.0061 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.8931 3.4373 0.0003 28 1 6.4768 2.7023 -0.0005 29 1 8.5658 -1.5815 -1.9680 30 1 9.3342 -3.1057 -1.4628 31 1 7.6288 -3.0949 -1.9721 32 1 10.7087 -4.8269 0.3942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158440900.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:13 Heat of formation + Delta-G solvation = -168.128681 kcal Electronic energy + Delta-G solvation = -19728.853325 eV Core-core repulsion = 16235.474188 eV Total energy + Delta-G solvation = -3493.379138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.12860 -41.50250 -41.18020 -37.84292 -37.79600 -35.40110 -34.45285 -32.34872 -31.47189 -28.90337 -27.48830 -26.39020 -24.11867 -22.96539 -22.33325 -21.53872 -19.97904 -19.20321 -18.64034 -18.26132 -18.19697 -17.65554 -17.31766 -16.52136 -16.48726 -15.41641 -15.05716 -14.57584 -14.41798 -14.36225 -14.30694 -14.24899 -14.00400 -13.27499 -13.15171 -13.06221 -12.82213 -12.43521 -12.25583 -12.17757 -11.94695 -11.93258 -11.69371 -11.39926 -11.06613 -10.62361 -10.23193 -8.30858 -6.47725 -0.87106 0.44928 0.83804 1.39850 1.44509 1.46337 1.54042 1.57173 1.67244 2.00253 2.39791 3.00198 3.41552 3.53416 3.73687 4.11921 4.13856 4.24198 4.32982 4.46474 4.62820 4.70069 4.75248 4.77407 4.95790 4.99426 5.02920 5.36740 5.42373 5.56068 5.78155 5.97014 6.33754 6.49659 6.71597 7.22905 8.76949 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.004425 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.239883 B = 6326.023925 C = 7276.353027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.559 3.441 4 O -0.490 6.490 5 C -0.045 4.045 6 C -0.097 4.097 7 C -0.109 4.109 8 C -0.028 4.028 9 C 0.534 3.466 10 O -0.509 6.509 11 O -0.353 6.353 12 C 0.216 3.784 13 H 0.020 0.980 14 C -0.145 4.145 15 C -0.553 4.553 16 H 0.065 0.935 17 C 0.021 3.979 18 N -0.914 5.914 19 Si 0.983 3.017 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.267 1.267 23 O -0.145 6.145 24 H 0.076 0.924 25 H 0.131 0.869 26 H 0.075 0.925 27 H 0.212 0.788 28 H 0.201 0.799 29 H 0.029 0.971 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 10.490 -1.044 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.404 3.596 4 O -0.380 6.380 5 C -0.097 4.097 6 C -0.116 4.116 7 C -0.128 4.128 8 C -0.080 4.080 9 C 0.378 3.622 10 O -0.400 6.400 11 O -0.269 6.269 12 C 0.163 3.837 13 H 0.038 0.962 14 C -0.202 4.202 15 C -0.590 4.590 16 H 0.083 0.917 17 C -0.179 4.179 18 N -0.551 5.551 19 Si 0.806 3.194 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.192 1.192 23 O -0.040 6.040 24 H 0.094 0.906 25 H 0.149 0.851 26 H 0.094 0.906 27 H 0.229 0.771 28 H 0.218 0.782 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.393 10.464 -1.073 18.644 hybrid contribution 0.256 -0.748 0.297 0.844 sum -15.137 9.717 -0.776 18.004 Atomic orbital electron populations 1.23771 0.72697 1.06369 1.03671 1.86693 1.26589 1.31039 1.83126 1.19164 0.84971 0.82484 0.73011 1.90916 1.64184 1.36113 1.46753 1.21533 0.88671 0.86625 1.12823 1.22368 0.90450 1.00038 0.98710 1.22375 0.99702 0.91346 0.99384 1.21356 0.81060 0.93561 1.12030 1.19777 0.86619 0.82536 0.73223 1.90859 1.26592 1.75012 1.47549 1.86657 1.41437 1.17208 1.81598 1.20588 0.78533 0.89065 0.95506 0.96185 1.22025 1.02975 0.99602 0.95642 1.21259 0.98519 1.01081 1.38135 0.91670 1.25781 0.94050 1.02306 0.95789 1.69993 1.02318 1.37769 1.45036 0.85180 0.77960 0.77679 0.78588 1.19188 1.20012 1.19180 1.84238 1.14920 1.35306 1.69551 0.90570 0.85088 0.90620 0.77113 0.78241 0.95162 0.89522 0.93619 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.36 -8.45 10.58 -55.86 -0.59 -9.04 16 3 C 0.56 13.77 7.95 70.17 0.56 14.33 16 4 O -0.49 -12.24 16.65 19.77 0.33 -11.91 16 5 C -0.04 -1.17 7.19 24.25 0.17 -0.99 16 6 C -0.10 -1.98 10.60 22.33 0.24 -1.74 16 7 C -0.11 -2.65 10.60 22.33 0.24 -2.41 16 8 C -0.03 -0.94 7.19 24.24 0.17 -0.77 16 9 C 0.53 23.11 7.93 70.17 0.56 23.67 16 10 O -0.51 -23.51 16.12 19.73 0.32 -23.19 16 11 O -0.35 -17.63 9.88 -55.94 -0.55 -18.19 16 12 C 0.22 11.85 2.56 29.85 0.08 11.92 16 13 H 0.02 1.22 7.16 -2.39 -0.02 1.20 16 14 C -0.14 -7.38 9.33 71.98 0.67 -6.71 16 15 C -0.55 -31.48 8.90 25.60 0.23 -31.25 16 16 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 17 C 0.02 1.15 5.30 84.66 0.45 1.59 16 18 N -0.91 -51.57 11.32 21.45 0.24 -51.33 16 19 Si 0.98 42.61 29.54 68.60 2.03 44.63 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 23 O -0.14 -4.81 10.68 -4.54 -0.05 -4.86 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.21 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.20 3.83 8.06 -2.91 -0.02 3.80 16 29 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 4.70 6.07 -2.39 -0.01 4.68 16 31 H 0.04 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -67.76 300.37 7.44 -60.33 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.15 Total: 4.35 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 4.56 Total: 9.21 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.24 Total: -51.33 kcal Atomic # 8 Polarization: -66.65 SS G_CDS: -0.54 Total: -67.19 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -67.76 7.44 -60.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158440900.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.801 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds