Wall clock time and date at job start Mon Mar 30 2020 00:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34224 * 117.00077 * 179.97438 * 11 10 9 13 13 O 1.20833 * 120.00103 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00302 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47225 * 180.02562 * 14 12 11 16 16 C 1.38257 * 119.98939 * 269.71641 * 15 14 12 17 17 C 1.38229 * 120.02530 * 179.76915 * 16 15 14 18 18 C 1.38228 * 120.00881 * 0.50823 * 17 16 15 19 19 C 1.38327 * 119.99131 * 359.74916 * 18 17 16 20 20 Cl 1.73601 * 120.01694 * 180.02562 * 19 18 17 21 21 C 1.38193 * 119.99542 * 89.99699 * 15 14 12 22 22 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 24 24 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 25 25 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 26 26 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 27 27 H 1.09009 * 109.46972 * 299.99362 * 14 12 11 28 28 H 1.08995 * 109.47473 * 59.99636 * 14 12 11 29 29 H 1.08004 * 119.98952 * 0.02562 * 16 15 14 30 30 H 1.08002 * 119.99314 * 180.26157 * 17 16 15 31 31 H 1.08001 * 120.00526 * 179.76727 * 18 17 16 32 32 H 1.08000 * 120.00743 * 359.95491 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5192 -4.9196 0.0033 12 6 2.2502 -6.0453 0.0036 13 8 3.4569 -5.9821 0.0031 14 6 1.5661 -7.3880 0.0036 15 6 2.6040 -8.4807 0.0047 16 6 3.0766 -8.9862 -1.1922 17 6 4.0321 -9.9851 -1.1921 18 6 4.5080 -10.4864 0.0050 19 6 4.0317 -9.9847 1.2029 20 17 4.6294 -10.6133 2.7066 21 6 3.0790 -8.9811 1.2021 22 1 -0.4851 0.8400 -0.0004 23 1 0.6240 -2.5576 -0.8880 24 1 0.6247 -2.5563 0.8920 25 1 2.8719 -3.6036 0.8927 26 1 2.8719 -3.6052 -0.8873 27 1 0.9431 -7.4784 0.8935 28 1 0.9436 -7.4787 -0.8865 29 1 2.7020 -8.5976 -2.1277 30 1 4.4039 -10.3766 -2.1274 31 1 5.2518 -11.2694 0.0050 32 1 2.7071 -8.5888 2.1370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170818409.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:43 Heat of formation + Delta-G solvation = -86.967869 kcal Electronic energy + Delta-G solvation = -16897.888976 eV Core-core repulsion = 13848.738400 eV Total energy + Delta-G solvation = -3049.150576 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.31072 -39.22059 -36.73188 -36.10127 -33.39755 -33.09393 -30.97389 -30.35562 -28.15575 -25.00075 -22.94607 -22.50324 -21.02612 -20.34441 -17.43476 -17.23573 -16.36687 -16.18503 -15.88562 -15.51494 -15.44703 -14.51900 -14.06817 -13.66115 -13.51723 -13.43220 -12.67197 -12.36647 -12.31532 -11.79674 -11.63210 -11.58211 -11.21975 -11.07530 -11.06805 -10.74960 -10.71562 -10.26878 -9.66615 -9.66058 -9.33962 -9.13727 -8.89838 -8.45584 -6.11802 -4.16397 0.90707 1.01509 1.90657 2.53619 3.05298 3.29291 3.33294 3.36334 3.58035 4.32232 4.38424 4.54371 4.78070 4.96641 4.99796 5.17493 5.24625 5.24713 5.34664 5.52237 5.65627 5.95896 6.06229 6.07212 6.07939 6.23098 6.53879 6.61731 6.97400 7.53847 7.60246 7.85012 8.16333 8.24361 8.88959 9.48115 10.99659 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.036742 B = 0.003043 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.884533 B = 9197.871986 C = 9449.537861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.357 6.357 12 C 0.455 3.545 13 O -0.510 6.510 14 C -0.078 4.078 15 C -0.057 4.057 16 C -0.098 4.098 17 C -0.106 4.106 18 C -0.111 4.111 19 C -0.033 4.033 20 Cl -0.073 7.073 21 C -0.094 4.094 22 H 0.264 0.736 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.571 -22.269 -0.170 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.274 6.274 12 C 0.297 3.703 13 O -0.399 6.399 14 C -0.116 4.116 15 C -0.058 4.058 16 C -0.116 4.116 17 C -0.125 4.125 18 C -0.130 4.130 19 C -0.060 4.060 20 Cl -0.045 7.045 21 C -0.113 4.113 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.822 -22.124 -0.031 22.644 hybrid contribution 0.668 0.977 0.161 1.194 sum 5.490 -21.147 0.131 21.849 Atomic orbital electron populations 1.69960 1.06095 1.27134 1.49678 1.24979 0.94921 0.99384 0.94823 0.86526 0.79487 0.82448 0.78808 1.20058 1.21103 1.20044 1.20949 0.93156 0.90151 1.52362 0.92314 1.19166 0.94174 0.89014 0.98868 1.23651 0.96364 0.78715 1.00954 1.86518 1.42425 1.15801 1.82621 1.23305 0.86623 0.87083 0.73289 1.90664 1.15688 1.88257 1.45294 1.20319 0.97017 0.87172 1.07062 1.19278 0.97479 0.96031 0.92980 1.21161 0.96575 0.96136 0.97771 1.21074 0.96861 0.96858 0.97675 1.21051 1.00426 1.00672 0.90829 1.20844 0.99212 0.98715 0.87217 1.98370 1.87381 1.86272 1.32429 1.20920 0.96201 0.95461 0.98693 0.92628 0.95347 0.95350 0.92310 0.92325 0.86604 0.86469 0.85202 0.84913 0.85007 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.67 5.40 37.16 0.20 1.87 16 11 O -0.36 -6.93 10.22 -39.24 -0.40 -7.33 16 12 C 0.45 7.56 7.95 36.00 0.29 7.84 16 13 O -0.51 -9.96 15.78 -18.76 -0.30 -10.26 16 14 C -0.08 -0.87 5.94 -29.04 -0.17 -1.04 16 15 C -0.06 -0.65 4.37 -104.63 -0.46 -1.11 16 16 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 17 C -0.11 -0.97 10.05 -39.59 -0.40 -1.37 16 18 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 19 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 20 Cl -0.07 -0.76 28.96 -51.86 -1.50 -2.26 16 21 C -0.09 -1.07 9.49 -39.55 -0.38 -1.45 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 26 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 27 H 0.12 1.05 8.09 -51.92 -0.42 0.63 16 28 H 0.12 1.02 8.08 -51.93 -0.42 0.60 16 29 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -31.83 305.08 -8.15 -39.98 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -3.76 Total: -3.79 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.50 Total: -11.73 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.70 Total: -17.59 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.83 -8.15 -39.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170818409.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.991 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds