Wall clock time and date at job start Mon Mar 30 2020 00:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34224 * 117.00077 * 179.97438 * 11 10 9 13 13 O 1.20833 * 120.00103 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00302 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47225 * 180.02562 * 14 12 11 16 16 C 1.38257 * 119.98939 * 269.71641 * 15 14 12 17 17 C 1.38229 * 120.02530 * 179.76915 * 16 15 14 18 18 C 1.38228 * 120.00881 * 0.50823 * 17 16 15 19 19 C 1.38327 * 119.99131 * 359.74916 * 18 17 16 20 20 Cl 1.73601 * 120.01694 * 180.02562 * 19 18 17 21 21 C 1.38193 * 119.99542 * 89.99699 * 15 14 12 22 22 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 24 24 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 25 25 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 26 26 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 27 27 H 1.09009 * 109.46972 * 299.99362 * 14 12 11 28 28 H 1.08995 * 109.47473 * 59.99636 * 14 12 11 29 29 H 1.08004 * 119.98952 * 0.02562 * 16 15 14 30 30 H 1.08002 * 119.99314 * 180.26157 * 17 16 15 31 31 H 1.08001 * 120.00526 * 179.76727 * 18 17 16 32 32 H 1.08000 * 120.00743 * 359.95491 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5192 -4.9196 0.0033 12 6 2.2502 -6.0453 0.0036 13 8 3.4569 -5.9821 0.0031 14 6 1.5661 -7.3880 0.0036 15 6 2.6040 -8.4807 0.0047 16 6 3.0766 -8.9862 -1.1922 17 6 4.0321 -9.9851 -1.1921 18 6 4.5080 -10.4864 0.0050 19 6 4.0317 -9.9847 1.2029 20 17 4.6294 -10.6133 2.7066 21 6 3.0790 -8.9811 1.2021 22 1 -0.4851 0.8400 -0.0004 23 1 0.6240 -2.5576 -0.8880 24 1 0.6247 -2.5563 0.8920 25 1 2.8719 -3.6036 0.8927 26 1 2.8719 -3.6052 -0.8873 27 1 0.9431 -7.4784 0.8935 28 1 0.9436 -7.4787 -0.8865 29 1 2.7020 -8.5976 -2.1277 30 1 4.4039 -10.3766 -2.1274 31 1 5.2518 -11.2694 0.0050 32 1 2.7071 -8.5888 2.1370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170818409.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:43 Heat of formation + Delta-G solvation = -103.611700 kcal Electronic energy + Delta-G solvation = -16898.610707 eV Core-core repulsion = 13848.738400 eV Total energy + Delta-G solvation = -3049.872307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.58400 -40.17321 -37.76955 -37.38561 -35.45067 -34.02983 -32.32085 -31.72437 -29.17278 -26.93779 -23.77787 -23.65324 -22.74852 -21.59261 -19.01023 -18.14621 -18.05994 -17.69984 -17.11932 -16.51939 -16.48075 -16.36708 -15.15518 -14.75454 -14.58999 -14.44964 -14.26600 -14.04327 -13.41522 -13.03331 -13.00842 -12.62359 -12.56905 -12.52402 -12.41943 -12.32636 -11.88778 -11.82602 -11.53313 -11.46816 -11.34947 -10.61174 -9.93295 -9.68586 -8.27461 -6.40823 0.11400 0.24110 1.11848 1.21052 1.40909 1.44312 1.52252 1.81798 2.39675 2.69543 3.06875 3.46994 3.82569 3.89964 4.05703 4.20189 4.24568 4.25812 4.28346 4.45420 4.58059 4.69802 4.75498 4.90670 5.20510 5.27532 5.32919 5.45477 5.46810 5.56558 5.74906 5.81986 6.06304 6.71411 6.77367 7.29033 8.84876 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.036742 B = 0.003043 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.884533 B = 9197.871986 C = 9449.537861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.365 6.365 12 C 0.454 3.546 13 O -0.541 6.541 14 C -0.067 4.067 15 C -0.074 4.074 16 C -0.106 4.106 17 C -0.106 4.106 18 C -0.113 4.113 19 C -0.049 4.049 20 Cl -0.075 7.075 21 C -0.110 4.110 22 H 0.268 0.732 23 H 0.008 0.992 24 H 0.007 0.993 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.162 0.838 31 H 0.151 0.849 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 -22.927 -0.832 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.591 4.591 8 H 0.082 0.918 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.281 6.281 12 C 0.298 3.702 13 O -0.431 6.431 14 C -0.104 4.104 15 C -0.075 4.075 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.131 4.131 19 C -0.075 4.075 20 Cl -0.046 7.046 21 C -0.128 4.128 22 H 0.077 0.923 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.157 0.843 28 H 0.165 0.835 29 H 0.164 0.836 30 H 0.179 0.821 31 H 0.169 0.831 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.587 -22.810 -0.691 23.495 hybrid contribution 0.433 1.064 0.360 1.204 sum 6.020 -21.746 -0.331 22.566 Atomic orbital electron populations 1.70079 1.07777 1.28376 1.50284 1.25948 0.95841 1.03358 0.94038 0.85392 0.78221 0.77505 0.79301 1.19042 1.20404 1.19134 1.21362 0.93677 0.91378 1.52675 0.91824 1.18974 0.94330 0.90560 0.96752 1.23120 0.94997 0.79285 1.00789 1.86513 1.42615 1.15794 1.83226 1.24400 0.86494 0.87638 0.71633 1.90649 1.17188 1.88527 1.46701 1.20461 0.97061 0.83312 1.09556 1.19375 0.98193 0.96463 0.93461 1.21485 0.96626 0.96279 0.98045 1.21447 0.96092 0.96159 0.98684 1.21374 1.00424 1.00802 0.90536 1.21030 0.99622 0.99117 0.87772 1.98365 1.87365 1.86243 1.32609 1.21066 0.96747 0.96022 0.99008 0.92286 0.97353 0.97500 0.92538 0.92311 0.84343 0.83515 0.83595 0.82055 0.83103 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.66 5.35 29.85 0.16 1.82 16 10 C 0.09 4.09 5.40 71.98 0.39 4.48 16 11 O -0.36 -14.10 10.22 -51.35 -0.52 -14.62 16 12 C 0.45 14.70 7.95 71.23 0.57 15.26 16 13 O -0.54 -20.86 15.78 21.94 0.35 -20.52 16 14 C -0.07 -1.36 5.94 29.10 0.17 -1.19 16 15 C -0.07 -1.57 4.37 -19.87 -0.09 -1.66 16 16 C -0.11 -1.93 9.70 22.27 0.22 -1.72 16 17 C -0.11 -1.65 10.05 22.27 0.22 -1.43 16 18 C -0.11 -1.94 9.83 22.29 0.22 -1.72 16 19 C -0.05 -1.02 6.32 22.32 0.14 -0.87 16 20 Cl -0.07 -1.48 28.96 -2.72 -0.08 -1.56 16 21 C -0.11 -2.41 9.49 22.29 0.21 -2.19 16 22 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 23 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 25 H 0.06 2.53 8.13 -2.39 -0.02 2.51 16 26 H 0.06 2.60 8.13 -2.39 -0.02 2.58 16 27 H 0.14 2.21 8.09 -2.38 -0.02 2.19 16 28 H 0.15 2.13 8.08 -2.39 -0.02 2.11 16 29 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 30 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 31 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -68.65 305.08 6.08 -62.57 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.12 Total: 3.11 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 2.91 Total: -19.53 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.28 Total: -54.99 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.18 Total: -35.14 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -68.65 6.08 -62.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170818409.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.040 kcal (2) G-P(sol) polarization free energy of solvation -68.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds