Wall clock time and date at job start Mon Mar 30 2020 01:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37896 * 119.93345 * 2 1 4 4 C 1.39647 * 119.86059 * 179.97438 * 3 2 1 5 5 C 1.47665 * 120.13576 * 179.97438 * 4 3 2 6 6 O 1.21477 * 119.99870 * 0.02562 * 5 4 3 7 7 O 1.34716 * 120.00008 * 180.02562 * 5 4 3 8 8 C 1.45203 * 116.99919 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47304 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.47346 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99863 * 0.02562 * 10 9 8 12 12 C 1.37872 * 119.99708 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00632 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99447 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47407 * 60.00240 * 14 12 10 16 16 H 1.48510 * 109.46951 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47210 * 299.99658 * 14 12 10 18 18 C 1.39686 * 119.73026 * 0.02562 * 4 3 2 19 19 C 1.37860 * 119.86103 * 359.96995 * 18 4 3 20 20 C 1.38505 * 119.93002 * 179.97438 * 2 1 3 21 21 Cl 1.73601 * 119.86144 * 359.72342 * 20 2 1 22 22 H 1.09001 * 109.47309 * 270.01742 * 1 2 3 23 23 H 1.09001 * 109.47255 * 30.01889 * 1 2 3 24 24 H 1.09006 * 109.47617 * 150.01998 * 1 2 3 25 25 H 1.08000 * 120.06970 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47194 * 299.99375 * 8 7 5 27 27 H 1.09000 * 109.47601 * 59.99294 * 8 7 5 28 28 H 1.08998 * 109.46828 * 300.00019 * 9 8 7 29 29 H 1.09008 * 109.46871 * 59.99635 * 9 8 7 30 30 H 0.97003 * 120.00470 * 180.02562 * 13 12 10 31 31 H 1.08005 * 120.06689 * 180.02562 * 18 4 3 32 32 H 1.08002 * 119.92999 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1950 0.0000 4 6 3.5915 1.1932 0.0005 5 6 4.3345 2.4694 0.0000 6 8 3.7309 3.5236 -0.0005 7 8 5.6817 2.4645 0.0000 8 6 6.3455 3.7558 0.0000 9 6 7.8616 3.5499 0.0006 10 6 8.5507 4.8902 0.0000 11 1 7.9657 5.7981 -0.0004 12 6 9.9278 4.9573 -0.0001 13 7 10.6401 3.8518 -0.0002 14 14 10.7818 6.6186 -0.0002 15 1 10.3857 7.3789 1.2124 16 1 12.2534 6.4187 0.0003 17 1 10.3855 7.3789 -1.2127 18 6 4.2827 -0.0206 0.0005 19 6 3.5834 -1.2087 0.0006 20 6 2.1980 -1.2003 0.0005 21 17 1.3246 -2.7006 0.0085 22 1 -0.3634 0.0003 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6551 2.1304 -0.0004 26 1 6.0548 4.3139 -0.8900 27 1 6.0546 4.3140 0.8899 28 1 8.1521 2.9920 0.8908 29 1 8.1528 2.9916 -0.8892 30 1 11.6090 3.8990 0.0001 31 1 5.3627 -0.0283 0.0014 32 1 4.1167 -2.1479 0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177398294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:46 Heat of formation + Delta-G solvation = -102.972769 kcal Electronic energy + Delta-G solvation = -16973.413447 eV Core-core repulsion = 13923.568847 eV Total energy + Delta-G solvation = -3049.844601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.69600 -40.18329 -37.80541 -37.45971 -35.47073 -34.09386 -32.56964 -31.95035 -28.12111 -27.23748 -25.37151 -23.16564 -22.97815 -21.72228 -19.04597 -18.39809 -18.05195 -17.57909 -17.42144 -16.56520 -16.51951 -15.47992 -15.38894 -14.93173 -14.64827 -14.38424 -14.29829 -13.52052 -13.40438 -13.19386 -13.10955 -13.04006 -12.63834 -12.62844 -12.50632 -12.47420 -11.95921 -11.80350 -11.55628 -11.51542 -11.40740 -10.61182 -10.08824 -9.83355 -8.27372 -6.40670 -0.61630 0.12470 0.95544 1.30977 1.40760 1.44749 1.51731 1.62688 2.39816 2.49793 3.07169 3.51948 3.61563 3.66205 4.01473 4.09498 4.20371 4.21613 4.41312 4.55919 4.67157 4.74907 4.76976 4.93742 5.12760 5.14172 5.18425 5.25740 5.45663 5.47128 5.54755 5.72272 6.05622 6.60279 6.72734 7.29113 8.84991 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.047139 B = 0.003146 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.848044 B = 8899.161637 C = 9467.257940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.087 4.087 3 C -0.050 4.050 4 C -0.131 4.131 5 C 0.500 3.500 6 O -0.537 6.537 7 O -0.357 6.357 8 C 0.090 3.910 9 C 0.032 3.968 10 C -0.552 4.552 11 H 0.065 0.935 12 C 0.007 3.993 13 N -0.926 5.926 14 Si 0.973 3.027 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.059 4.059 19 C -0.113 4.113 20 C -0.010 4.010 21 Cl -0.046 7.046 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.149 0.851 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.268 0.732 31 H 0.150 0.850 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.725 -12.642 0.035 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.088 4.088 3 C -0.068 4.068 4 C -0.132 4.132 5 C 0.347 3.653 6 O -0.429 6.429 7 O -0.273 6.273 8 C 0.017 3.983 9 C -0.006 4.006 10 C -0.590 4.590 11 H 0.083 0.917 12 C -0.192 4.192 13 N -0.565 5.565 14 Si 0.796 3.204 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.077 4.077 19 C -0.132 4.132 20 C -0.037 4.037 21 Cl -0.016 7.016 22 H 0.108 0.892 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.166 0.834 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.077 0.923 31 H 0.167 0.833 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.764 -12.523 0.034 23.397 hybrid contribution 0.825 0.838 0.004 1.176 sum -18.939 -11.685 0.038 22.254 Atomic orbital electron populations 1.20962 0.87560 1.04671 1.04229 1.19923 0.98526 0.90070 1.00240 1.21196 0.91355 0.99135 0.95102 1.19276 0.93927 0.90390 1.09603 1.21664 0.81370 0.90095 0.72166 1.90776 1.70118 1.34479 1.47487 1.86550 1.20156 1.37487 1.83100 1.23238 0.93362 0.80455 1.01199 1.18980 0.87527 0.97203 0.96845 1.21346 0.92294 0.92669 1.52691 0.91673 1.25944 0.98112 1.01085 0.94036 1.70078 1.06759 1.29402 1.50265 0.85389 0.77079 0.78608 0.79310 1.19075 1.20462 1.19063 1.21582 1.01621 0.90364 0.94128 1.21277 0.91901 0.99612 1.00371 1.21291 0.92738 0.87664 1.02004 1.98380 1.76084 1.30791 1.96381 0.89227 0.89708 0.89870 0.83377 0.92004 0.92007 0.97342 0.97347 0.92296 0.83253 0.81622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.60 71.23 0.68 -0.79 16 2 C -0.09 -1.59 5.88 -19.88 -0.12 -1.71 16 3 C -0.05 -1.14 9.24 22.53 0.21 -0.93 16 4 C -0.13 -3.64 5.87 -20.10 -0.12 -3.76 16 5 C 0.50 18.14 7.90 70.31 0.56 18.69 16 6 O -0.54 -21.60 16.13 19.91 0.32 -21.28 16 7 O -0.36 -14.45 9.47 -56.26 -0.53 -14.99 16 8 C 0.09 4.09 5.41 71.98 0.39 4.48 16 9 C 0.03 1.69 5.35 29.85 0.16 1.85 16 10 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 11 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 12 C 0.01 0.42 5.46 84.65 0.46 0.88 16 13 N -0.93 -55.18 13.29 21.44 0.28 -54.90 16 14 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 18 C -0.06 -1.39 9.61 22.53 0.22 -1.17 16 19 C -0.11 -2.11 9.81 22.25 0.22 -1.89 16 20 C -0.01 -0.18 6.32 22.41 0.14 -0.04 16 21 Cl -0.05 -0.68 27.27 -2.72 -0.07 -0.75 16 22 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 24 H 0.08 0.92 6.90 -2.38 -0.02 0.91 16 25 H 0.15 3.29 7.65 -2.91 -0.02 3.26 16 26 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.15 3.58 7.61 -2.91 -0.02 3.56 16 32 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -65.10 301.64 6.19 -58.92 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: 1.13 Total: 2.96 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 3.03 Total: -15.41 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.28 Total: -54.90 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.21 Total: -36.27 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.07 Total: -0.75 kcal Total: -65.10 6.19 -58.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177398294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.057 kcal (2) G-P(sol) polarization free energy of solvation -65.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds