Wall clock time and date at job start Mon Mar 30 2020 01:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37893 * 120.07320 * 2 1 4 4 C 1.38504 * 120.13738 * 179.97438 * 3 2 1 5 5 Cl 1.73603 * 119.85907 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.27634 * 359.70504 * 4 3 2 7 7 C 1.37852 * 120.13444 * 0.55339 * 6 4 3 8 8 C 1.39659 * 120.06655 * 179.97438 * 2 1 3 9 9 C 1.47650 * 120.13420 * 0.04588 * 8 2 1 10 10 O 1.21480 * 120.00639 * 353.74448 * 9 8 2 11 11 O 1.34727 * 119.99727 * 173.74764 * 9 8 2 12 12 C 1.45196 * 116.99721 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47176 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.47410 * 179.97438 * 13 12 11 15 15 H 1.07990 * 120.00118 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99805 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99630 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00406 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47339 * 89.99475 * 18 16 14 20 20 H 1.48496 * 109.47506 * 210.00133 * 18 16 14 21 21 H 1.48508 * 109.47023 * 329.99943 * 18 16 14 22 22 H 1.08998 * 109.47623 * 263.44127 * 1 2 3 23 23 H 1.09011 * 109.47028 * 23.44014 * 1 2 3 24 24 H 1.09005 * 109.47218 * 143.43344 * 1 2 3 25 25 H 1.08001 * 119.93364 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.93180 * 180.29429 * 6 4 3 27 27 H 1.07997 * 120.06926 * 179.74502 * 7 6 4 28 28 H 1.09002 * 109.47411 * 299.99233 * 12 11 9 29 29 H 1.08994 * 109.47716 * 59.99466 * 12 11 9 30 30 H 1.09005 * 109.46847 * 299.99868 * 13 12 11 31 31 H 1.09002 * 109.47100 * 59.99542 * 13 12 11 32 32 H 0.97000 * 119.99658 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1933 0.0000 4 6 3.5830 1.1949 0.0005 5 17 4.4456 2.7014 -0.0001 6 6 4.2828 -0.0008 0.0072 7 6 3.6035 -1.2003 0.0019 8 6 2.2066 -1.2087 0.0005 9 6 1.4729 -2.4899 0.0001 10 8 0.2634 -2.4974 0.1139 11 8 2.1447 -3.6509 -0.1265 12 6 1.3585 -4.8715 -0.1193 13 6 2.2875 -6.0774 -0.2731 14 6 1.4716 -7.3444 -0.2650 15 1 0.3980 -7.2947 -0.1601 16 6 2.0960 -8.5673 -0.3914 17 7 1.3839 -9.6729 -0.3848 18 14 3.9532 -8.6535 -0.5720 19 1 4.5773 -8.7529 0.7718 20 1 4.3175 -9.8474 -1.3765 21 1 4.4416 -7.4286 -1.2551 22 1 -0.3634 -0.1174 1.0209 23 1 -0.3634 0.9430 -0.4088 24 1 -0.3634 -0.8254 -0.6123 25 1 1.6580 2.1287 -0.0004 26 1 5.3628 0.0069 0.0124 27 1 4.1501 -2.1318 0.0030 28 1 0.8157 -4.9486 0.8228 29 1 0.6493 -4.8519 -0.9466 30 1 2.8300 -6.0002 -1.2154 31 1 2.9971 -6.0973 0.5541 32 1 1.8232 -10.5332 -0.4734 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178292059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:31 Heat of formation + Delta-G solvation = -95.395109 kcal Electronic energy + Delta-G solvation = -17220.914176 eV Core-core repulsion = 14171.398167 eV Total energy + Delta-G solvation = -3049.516009 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.79315 -40.06860 -37.89379 -37.44985 -35.41533 -33.76852 -33.00608 -32.08889 -28.44371 -27.22758 -25.04882 -23.27025 -22.50734 -21.88944 -19.37196 -18.68723 -17.88029 -17.62408 -17.26544 -16.55673 -16.29211 -15.61646 -15.50365 -14.89225 -14.67710 -14.42074 -14.24143 -13.80442 -13.47793 -13.40879 -13.25283 -13.11796 -12.55526 -12.48734 -12.37117 -12.35504 -11.90522 -11.81051 -11.55230 -11.44918 -11.18046 -10.81307 -10.04150 -9.87855 -8.34539 -6.42899 -0.58577 0.14595 0.95307 1.34869 1.38692 1.40465 1.52874 1.61708 2.34571 2.49853 3.00535 3.51883 3.60353 3.71690 4.01106 4.13838 4.17020 4.18205 4.38067 4.57988 4.64447 4.74366 4.79424 4.93406 5.02742 5.05549 5.12291 5.28557 5.33082 5.50141 5.51643 5.62714 6.15312 6.63242 6.64879 7.22285 8.81627 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.003700 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.537148 B = 7565.387478 C = 8424.759416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.012 4.012 3 C -0.122 4.122 4 C 0.000 4.000 5 Cl -0.051 7.051 6 C -0.127 4.127 7 C -0.046 4.046 8 C -0.144 4.144 9 C 0.498 3.502 10 O -0.525 6.525 11 O -0.355 6.355 12 C 0.095 3.905 13 C -0.003 4.003 14 C -0.543 4.543 15 H 0.035 0.965 16 C 0.011 3.989 17 N -0.945 5.945 18 Si 0.954 3.046 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.242 1.242 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.073 0.927 25 H 0.166 0.834 26 H 0.166 0.834 27 H 0.155 0.845 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.840 26.219 0.555 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.013 4.013 3 C -0.140 4.140 4 C -0.027 4.027 5 Cl -0.022 7.022 6 C -0.145 4.145 7 C -0.064 4.064 8 C -0.145 4.145 9 C 0.344 3.656 10 O -0.416 6.416 11 O -0.272 6.272 12 C 0.022 3.978 13 C -0.041 4.041 14 C -0.581 4.581 15 H 0.053 0.947 16 C -0.187 4.187 17 N -0.585 5.585 18 Si 0.777 3.223 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.166 1.166 22 H 0.097 0.903 23 H 0.110 0.890 24 H 0.091 0.909 25 H 0.183 0.817 26 H 0.183 0.817 27 H 0.172 0.828 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.562 26.121 0.573 27.200 hybrid contribution 0.099 -0.777 -0.003 0.783 sum 7.661 25.344 0.570 26.483 Atomic orbital electron populations 1.21115 0.89000 1.04069 1.03681 1.20114 0.97538 0.90556 0.93106 1.21089 0.92007 0.98629 1.02312 1.21380 0.92778 0.88058 1.00461 1.98399 1.76547 1.30793 1.96431 1.21273 1.02134 0.89479 1.01618 1.21603 0.92002 0.99843 0.92947 1.19190 0.94548 0.89493 1.11261 1.21613 0.85998 0.85229 0.72724 1.90773 1.16004 1.88114 1.46754 1.86500 1.42481 1.15333 1.82871 1.22978 0.93852 0.79718 1.01264 1.19465 0.95760 0.90321 0.98507 1.21116 0.94342 0.90901 1.51699 0.94659 1.25966 1.04469 0.94709 0.93536 1.70044 1.38561 0.98713 1.51158 0.85600 0.78462 0.78855 0.79432 1.18742 1.20701 1.16572 0.90345 0.88965 0.90856 0.81651 0.81681 0.82754 0.92280 0.92310 0.94546 0.94609 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 8.73 71.23 0.62 -1.94 16 2 C -0.01 -0.27 5.91 -19.60 -0.12 -0.38 16 3 C -0.12 -2.01 9.44 22.25 0.21 -1.80 16 4 C 0.00 0.00 6.33 22.41 0.14 0.14 16 5 Cl -0.05 -0.71 28.95 -2.72 -0.08 -0.78 16 6 C -0.13 -2.06 9.81 22.25 0.22 -1.85 16 7 C -0.05 -0.95 9.61 22.53 0.22 -0.74 16 8 C -0.14 -3.69 5.87 -20.10 -0.12 -3.81 16 9 C 0.50 16.63 7.82 70.31 0.55 17.18 16 10 O -0.52 -19.58 13.13 19.90 0.26 -19.31 16 11 O -0.36 -12.94 9.49 -56.37 -0.53 -13.48 16 12 C 0.10 4.02 5.41 71.98 0.39 4.41 16 13 C 0.00 -0.15 4.42 29.85 0.13 -0.01 16 14 C -0.54 -31.18 9.66 25.60 0.25 -30.93 16 15 H 0.04 2.23 7.99 -2.92 -0.02 2.21 16 16 C 0.01 0.64 5.47 84.66 0.46 1.11 16 17 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 18 Si 0.95 42.88 27.47 68.60 1.88 44.76 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 22 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.09 1.33 8.04 -2.38 -0.02 1.31 16 24 H 0.07 1.95 5.85 -2.38 -0.01 1.93 16 25 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 26 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 27 H 0.15 3.06 7.63 -2.91 -0.02 3.04 16 28 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.04 1.65 7.20 -2.38 -0.02 1.63 16 31 H 0.04 1.59 7.57 -2.39 -0.02 1.58 16 32 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -66.36 295.37 5.86 -60.49 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.08 Total: 5.23 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 2.96 Total: -18.63 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.30 Total: -58.28 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.27 Total: -32.79 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.76 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.78 kcal Total: -66.36 5.86 -60.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178292059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.902 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds