Wall clock time and date at job start Mon Mar 30 2020 01:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38324 * 119.93055 * 2 1 4 4 C 1.38388 * 120.32569 * 179.97438 * 3 2 1 5 5 C 1.37923 * 120.19047 * 0.25608 * 4 3 2 6 6 C 1.39648 * 119.85430 * 359.44855 * 5 4 3 7 7 C 1.47648 * 120.15785 * 180.27774 * 6 5 4 8 8 O 1.21478 * 120.00020 * 180.29045 * 7 6 5 9 9 O 1.34724 * 119.99781 * 0.29563 * 7 6 5 10 10 C 1.45201 * 116.99702 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47052 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00554 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99611 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00057 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99587 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47239 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47257 * 119.99978 * 16 14 12 19 19 H 1.48505 * 109.46670 * 240.00073 * 16 14 12 20 20 C 1.38092 * 119.93311 * 179.97438 * 2 1 3 21 21 Cl 1.73605 * 120.09714 * 0.02562 * 20 2 1 22 22 H 1.08998 * 109.46841 * 90.00237 * 1 2 3 23 23 H 1.08998 * 109.47058 * 210.00553 * 1 2 3 24 24 H 1.09007 * 109.47046 * 330.00737 * 1 2 3 25 25 H 1.07996 * 119.83520 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.90180 * 179.97438 * 4 3 2 27 27 H 1.07993 * 120.07198 * 179.72285 * 5 4 3 28 28 H 1.08997 * 109.47410 * 299.99505 * 10 9 7 29 29 H 1.09003 * 109.46964 * 60.00074 * 10 9 7 30 30 H 1.08997 * 109.46999 * 300.00275 * 11 10 9 31 31 H 1.09003 * 109.46719 * 60.00442 * 11 10 9 32 32 H 0.97000 * 119.99875 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1988 0.0000 4 6 3.5811 1.2083 0.0005 5 6 4.2829 0.0210 -0.0043 6 6 3.5940 -1.1937 0.0020 7 6 4.3385 -2.4687 0.0031 8 8 3.7364 -3.5238 0.0032 9 8 5.6858 -2.4620 0.0041 10 6 6.3513 -3.7525 0.0058 11 6 7.8672 -3.5445 0.0061 12 6 8.5579 -4.8839 0.0071 13 1 7.9743 -5.7926 0.0071 14 6 9.9353 -4.9492 0.0081 15 7 10.6460 -3.8427 0.0086 16 14 10.7915 -6.6094 0.0087 17 1 9.7741 -7.6911 0.0086 18 1 11.6414 -6.7285 -1.2032 19 1 11.6397 -6.7284 1.2219 20 6 2.1961 -1.1967 0.0005 21 17 1.3289 -2.7006 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.6534 2.1318 -0.0004 26 1 4.1130 2.1482 0.0001 27 1 5.3627 0.0307 -0.0084 28 1 6.0607 -4.3101 0.8960 29 1 6.0619 -4.3117 -0.8840 30 1 8.1576 -2.9870 -0.8844 31 1 8.1569 -2.9852 0.8956 32 1 11.6149 -3.8886 0.0089 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179411700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:50 Heat of formation + Delta-G solvation = -77.007214 kcal Electronic energy + Delta-G solvation = -17268.977614 eV Core-core repulsion = 14220.258965 eV Total energy + Delta-G solvation = -3048.718650 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30909 -38.96250 -36.49896 -35.96386 -33.44453 -33.11912 -31.24952 -30.16892 -27.25887 -25.45979 -23.98419 -22.04129 -21.11037 -20.39349 -17.60605 -16.94656 -16.20289 -16.12326 -15.93529 -15.43647 -14.66965 -14.44438 -14.38594 -13.70405 -13.29824 -12.88472 -12.59242 -12.44407 -12.36823 -11.92323 -11.77257 -11.56827 -11.22574 -11.11390 -11.01397 -10.75778 -10.64329 -9.88328 -9.64286 -9.53416 -9.27742 -9.14908 -8.85344 -8.44761 -6.10806 -4.14816 0.51446 0.95151 2.05187 2.68792 3.07638 3.27760 3.35310 3.40723 3.55422 4.38490 4.41789 4.58258 4.75687 4.94437 5.01101 5.26072 5.27680 5.32117 5.38143 5.50510 5.81362 5.95764 6.00402 6.10800 6.11460 6.12562 6.48108 6.64165 6.94889 7.55711 7.62051 7.86574 8.17641 8.25884 8.90923 9.49636 11.00786 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.037426 B = 0.003812 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.969204 B = 7343.864008 C = 8066.082453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.082 4.082 4 C -0.126 4.126 5 C -0.055 4.055 6 C -0.108 4.108 7 C 0.493 3.507 8 O -0.492 6.492 9 O -0.353 6.353 10 C 0.077 3.923 11 C 0.024 3.976 12 C -0.525 4.525 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.011 3.989 21 Cl -0.031 7.031 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.151 0.849 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.744 11.947 -0.042 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.096 4.096 3 C -0.100 4.100 4 C -0.145 4.145 5 C -0.074 4.074 6 C -0.110 4.110 7 C 0.336 3.664 8 O -0.381 6.381 9 O -0.269 6.269 10 C 0.005 3.995 11 C -0.013 4.013 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.016 4.016 21 Cl -0.001 7.001 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.153 0.847 26 H 0.155 0.845 27 H 0.169 0.831 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.777 11.511 -0.040 22.024 hybrid contribution 0.575 -1.095 -0.008 1.237 sum -18.202 10.417 -0.048 20.972 Atomic orbital electron populations 1.20863 0.89789 1.03630 1.03086 1.19712 0.97009 0.90995 1.01838 1.21238 0.94356 0.97117 0.97302 1.21261 0.94081 0.98541 1.00570 1.21607 1.01573 0.90368 0.93806 1.19126 0.91249 0.92899 1.07718 1.20886 0.82466 0.88738 0.74270 1.90883 1.69698 1.32833 1.44725 1.86553 1.18561 1.38942 1.82861 1.23671 0.95245 0.79527 1.01089 1.19180 0.84991 0.98226 0.98869 1.21022 0.91459 0.91866 1.52008 0.92174 1.24983 0.97397 0.96915 0.94868 1.69980 1.06165 1.26796 1.49923 0.86418 0.79538 0.83689 0.77692 1.19571 1.20829 1.20833 1.20934 0.90889 0.88484 1.01290 1.98407 1.75420 1.30296 1.95970 0.90539 0.90689 0.90904 0.84678 0.84480 0.83141 0.92184 0.92190 0.95333 0.95327 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.61 36.01 0.35 -0.55 16 2 C -0.09 -0.98 5.88 -104.64 -0.62 -1.60 16 3 C -0.08 -0.70 9.69 -39.49 -0.38 -1.09 16 4 C -0.13 -1.18 10.03 -39.64 -0.40 -1.58 16 5 C -0.06 -0.68 9.62 -39.17 -0.38 -1.06 16 6 C -0.11 -1.63 5.88 -104.95 -0.62 -2.25 16 7 C 0.49 9.25 7.89 34.57 0.27 9.52 16 8 O -0.49 -10.11 13.76 -19.25 -0.26 -10.37 16 9 O -0.35 -7.19 9.47 -40.56 -0.38 -7.57 16 10 C 0.08 1.74 5.41 37.16 0.20 1.94 16 11 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 12 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 16 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.01 0.16 6.35 -39.06 -0.25 -0.09 16 21 Cl -0.03 -0.44 24.36 -51.86 -1.26 -1.70 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.62 6.90 -51.93 -0.36 0.26 16 24 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 25 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 26 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 27 H 0.15 1.84 7.61 -52.49 -0.40 1.44 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 297.47 15.07 4.48 4.48 Total: -1.00 -31.50 297.47 -7.77 -39.27 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: -3.68 Total: -5.15 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.38 Total: -9.79 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.65 Total: -17.95 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.26 Total: -1.70 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.50 -7.77 -39.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179411700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.741 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds