Wall clock time and date at job start Mon Mar 30 2020 01:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38324 * 119.93055 * 2 1 4 4 C 1.38388 * 120.32569 * 179.97438 * 3 2 1 5 5 C 1.37923 * 120.19047 * 0.25608 * 4 3 2 6 6 C 1.39648 * 119.85430 * 359.44855 * 5 4 3 7 7 C 1.47648 * 120.15785 * 180.27774 * 6 5 4 8 8 O 1.21478 * 120.00020 * 180.29045 * 7 6 5 9 9 O 1.34724 * 119.99781 * 0.29563 * 7 6 5 10 10 C 1.45201 * 116.99702 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47052 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00554 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99611 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00057 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99587 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47239 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47257 * 119.99978 * 16 14 12 19 19 H 1.48505 * 109.46670 * 240.00073 * 16 14 12 20 20 C 1.38092 * 119.93311 * 179.97438 * 2 1 3 21 21 Cl 1.73605 * 120.09714 * 0.02562 * 20 2 1 22 22 H 1.08998 * 109.46841 * 90.00237 * 1 2 3 23 23 H 1.08998 * 109.47058 * 210.00553 * 1 2 3 24 24 H 1.09007 * 109.47046 * 330.00737 * 1 2 3 25 25 H 1.07996 * 119.83520 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.90180 * 179.97438 * 4 3 2 27 27 H 1.07993 * 120.07198 * 179.72285 * 5 4 3 28 28 H 1.08997 * 109.47410 * 299.99505 * 10 9 7 29 29 H 1.09003 * 109.46964 * 60.00074 * 10 9 7 30 30 H 1.08997 * 109.46999 * 300.00275 * 11 10 9 31 31 H 1.09003 * 109.46719 * 60.00442 * 11 10 9 32 32 H 0.97000 * 119.99875 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1988 0.0000 4 6 3.5811 1.2083 0.0005 5 6 4.2829 0.0210 -0.0043 6 6 3.5940 -1.1937 0.0020 7 6 4.3385 -2.4687 0.0031 8 8 3.7364 -3.5238 0.0032 9 8 5.6858 -2.4620 0.0041 10 6 6.3513 -3.7525 0.0058 11 6 7.8672 -3.5445 0.0061 12 6 8.5579 -4.8839 0.0071 13 1 7.9743 -5.7926 0.0071 14 6 9.9353 -4.9492 0.0081 15 7 10.6460 -3.8427 0.0086 16 14 10.7915 -6.6094 0.0087 17 1 9.7741 -7.6911 0.0086 18 1 11.6414 -6.7285 -1.2032 19 1 11.6397 -6.7284 1.2219 20 6 2.1961 -1.1967 0.0005 21 17 1.3289 -2.7006 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.6534 2.1318 -0.0004 26 1 4.1130 2.1482 0.0001 27 1 5.3627 0.0307 -0.0084 28 1 6.0607 -4.3101 0.8960 29 1 6.0619 -4.3117 -0.8840 30 1 8.1576 -2.9870 -0.8844 31 1 8.1569 -2.9852 0.8956 32 1 11.6149 -3.8886 0.0089 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179411700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:50 Heat of formation + Delta-G solvation = -94.094555 kcal Electronic energy + Delta-G solvation = -17269.718577 eV Core-core repulsion = 14220.258965 eV Total energy + Delta-G solvation = -3049.459612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.63111 -40.08764 -37.72307 -37.38236 -35.47110 -34.07140 -32.46942 -31.90576 -28.05843 -27.24249 -25.38493 -22.99734 -22.89890 -21.80287 -19.01922 -18.38259 -17.96153 -17.56431 -17.22735 -16.53367 -16.51219 -15.46208 -15.44351 -14.78997 -14.76576 -14.40230 -14.22470 -13.39502 -13.30873 -13.08421 -13.05815 -12.84216 -12.69232 -12.61434 -12.52609 -12.51354 -12.11169 -11.74144 -11.50240 -11.45246 -10.96284 -10.63045 -10.06686 -9.73092 -8.28530 -6.41554 -0.50178 0.09979 1.05049 1.40086 1.40886 1.44416 1.53755 1.65456 2.39053 2.56546 3.05914 3.50743 3.63384 3.88676 4.10242 4.19594 4.20519 4.23598 4.40179 4.56182 4.67276 4.77820 4.81090 5.06584 5.17398 5.22558 5.28478 5.31402 5.44563 5.48315 5.71354 5.71882 6.05009 6.65118 6.72225 7.28126 8.84333 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.037426 B = 0.003812 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.969204 B = 7343.864008 C = 8066.082453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.062 4.062 4 C -0.115 4.115 5 C -0.065 4.065 6 C -0.140 4.140 7 C 0.489 3.511 8 O -0.518 6.518 9 O -0.358 6.358 10 C 0.093 3.907 11 C 0.033 3.967 12 C -0.551 4.551 13 H 0.063 0.937 14 C 0.007 3.993 15 N -0.925 5.925 16 Si 0.974 3.026 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.007 4.007 21 Cl -0.050 7.050 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.182 0.818 26 H 0.174 0.826 27 H 0.144 0.856 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.910 13.585 -0.048 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.079 4.079 4 C -0.132 4.132 5 C -0.084 4.084 6 C -0.142 4.142 7 C 0.335 3.665 8 O -0.408 6.408 9 O -0.275 6.275 10 C 0.020 3.980 11 C -0.005 4.005 12 C -0.589 4.589 13 H 0.082 0.918 14 C -0.192 4.192 15 N -0.564 5.564 16 Si 0.797 3.203 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.034 4.034 21 Cl -0.020 7.020 22 H 0.105 0.895 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.199 0.801 26 H 0.191 0.809 27 H 0.161 0.839 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.962 13.163 -0.046 23.911 hybrid contribution 0.856 -1.425 -0.006 1.662 sum -19.106 11.738 -0.053 22.424 Atomic orbital electron populations 1.20958 0.87710 1.04634 1.04054 1.20149 0.98548 0.90275 1.00396 1.21800 0.94142 0.98055 0.93938 1.21677 0.94691 0.98480 0.98371 1.21702 1.01530 0.90765 0.94387 1.19050 0.91786 0.91737 1.11601 1.21645 0.81496 0.90247 0.73155 1.90855 1.69673 1.34128 1.46164 1.86536 1.20130 1.37402 1.83455 1.23187 0.93343 0.80570 1.00935 1.18977 0.87449 0.97232 0.96804 1.21392 0.92312 0.92600 1.52556 0.91848 1.25951 0.98086 1.01126 0.94020 1.70091 1.06762 1.29236 1.50351 0.85271 0.78305 0.78600 0.78093 1.18785 1.19939 1.19952 1.21178 0.90340 0.89008 1.02874 1.98392 1.75591 1.31875 1.96171 0.89469 0.91701 0.87939 0.80080 0.80883 0.83851 0.92287 0.92292 0.97350 0.97349 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.61 71.24 0.68 -0.74 16 2 C -0.09 -1.67 5.88 -19.88 -0.12 -1.78 16 3 C -0.06 -0.77 9.69 22.33 0.22 -0.56 16 4 C -0.11 -1.72 10.03 22.23 0.22 -1.50 16 5 C -0.07 -1.57 9.62 22.54 0.22 -1.35 16 6 C -0.14 -4.27 5.88 -20.08 -0.12 -4.39 16 7 C 0.49 19.12 7.89 70.31 0.55 19.68 16 8 O -0.52 -22.20 13.76 19.91 0.27 -21.92 16 9 O -0.36 -15.31 9.47 -56.34 -0.53 -15.84 16 10 C 0.09 4.37 5.41 71.98 0.39 4.76 16 11 C 0.03 1.78 5.35 29.85 0.16 1.94 16 12 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16 13 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 14 C 0.01 0.42 5.46 84.66 0.46 0.88 16 15 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 16 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 C -0.01 -0.18 6.35 22.61 0.14 -0.04 16 21 Cl -0.05 -1.46 24.36 -2.72 -0.07 -1.52 16 22 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.06 0.95 6.90 -2.39 -0.02 0.93 16 24 H 0.10 0.65 8.08 -2.38 -0.02 0.63 16 25 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 26 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 27 H 0.14 3.55 7.61 -2.91 -0.02 3.53 16 28 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -70.59 297.47 6.16 -64.43 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: 1.13 Total: -1.30 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 3.05 Total: -14.66 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.28 Total: -55.30 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.26 Total: -37.76 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.52 kcal Total: -70.59 6.16 -64.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179411700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.662 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds