Wall clock time and date at job start Mon Mar 30 2020 01:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46984 * 2 1 4 4 C 1.50700 * 109.46642 * 119.99465 * 2 1 3 5 5 H 1.08002 * 119.99493 * 120.00319 * 4 2 1 6 6 C 1.37868 * 120.00681 * 300.00026 * 4 2 1 7 7 N 1.31523 * 119.99462 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00552 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47584 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.46929 * 300.00137 * 8 6 4 11 11 H 1.48498 * 109.47205 * 60.00154 * 8 6 4 12 12 N 1.46495 * 109.47319 * 239.99773 * 2 1 3 13 13 C 1.34774 * 120.00132 * 85.00302 * 12 2 1 14 14 O 1.21370 * 120.00096 * 359.97438 * 13 12 2 15 15 C 1.49295 * 120.00082 * 179.97438 * 13 12 2 16 16 O 1.21410 * 120.00071 * 0.02562 * 15 13 12 17 17 N 1.34777 * 119.99925 * 179.97438 * 15 13 12 18 18 C 1.40389 * 119.99840 * 174.65439 * 17 15 13 19 19 C 1.38866 * 122.64229 * 334.82823 * 18 17 15 20 20 C 1.33323 * 114.89698 * 180.02562 * 19 18 17 21 21 S 1.75850 * 109.74483 * 0.02562 * 20 19 18 22 22 C 1.33949 * 122.64259 * 154.54637 * 18 17 15 23 23 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47455 * 300.00016 * 1 2 3 25 25 H 1.09005 * 109.46721 * 60.00302 * 1 2 3 26 26 H 0.97003 * 119.99576 * 179.97438 * 7 6 4 27 27 H 0.97008 * 120.00014 * 264.99927 * 12 2 1 28 28 H 0.96994 * 120.00413 * 354.65982 * 17 15 13 29 29 H 1.07994 * 122.55629 * 0.02873 * 19 18 17 30 30 H 1.07995 * 125.12779 * 180.02562 * 20 19 18 31 31 H 1.07998 * 125.21326 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3223 -1.1193 4.0080 9 1 1.8267 -0.4197 5.2205 10 1 1.8278 -2.5196 4.0082 11 1 3.8073 -1.1188 4.0079 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8581 1.1592 -2.4118 15 6 2.6454 -0.7220 -3.5758 16 8 2.9342 -1.9000 -3.5213 17 7 2.7737 -0.0498 -4.7370 18 6 3.3469 -0.6797 -5.8530 19 6 4.2355 -1.7409 -5.7400 20 6 4.6856 -2.2218 -6.8991 21 16 3.9786 -1.3185 -8.2319 22 6 3.0755 -0.3081 -7.1110 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 0.7080 1.1610 3.4843 27 1 2.2491 -1.6319 -1.1525 28 1 2.4702 0.8691 -4.8015 29 1 4.5388 -2.1458 -4.7859 30 1 5.3798 -3.0425 -7.0037 31 1 2.4067 0.4914 -7.3936 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190127627.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:56 Heat of formation + Delta-G solvation = -31.539253 kcal Electronic energy + Delta-G solvation = -17516.313769 eV Core-core repulsion = 14503.903215 eV Total energy + Delta-G solvation = -3012.410553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.72092 -38.72252 -37.27952 -35.18738 -33.83501 -32.43442 -29.38801 -29.13506 -25.44993 -25.17964 -23.36379 -21.37233 -19.79364 -19.36150 -18.64717 -17.84727 -16.51109 -16.19316 -15.76050 -15.35139 -15.12954 -14.33931 -14.01051 -13.69111 -13.31129 -13.07470 -13.00097 -12.65057 -12.50577 -11.83381 -11.33804 -11.18496 -11.02189 -11.00167 -10.82544 -10.51340 -10.39172 -10.29542 -9.19908 -9.13666 -8.88118 -8.64913 -8.18213 -8.06101 -6.19631 -4.29576 0.77007 1.44493 1.67342 1.74438 2.65932 2.83873 3.24012 3.28865 3.31104 3.66951 4.05417 4.31319 4.76033 5.02197 5.13321 5.16257 5.34080 5.68053 5.92692 5.99541 6.45891 6.68996 6.81452 6.98847 7.05647 7.18368 7.37204 7.58951 7.74133 7.86451 8.02315 8.39524 8.57183 8.81513 9.37580 10.86394 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.047077 B = 0.003630 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.630028 B = 7710.600597 C = 8134.686728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.667 5.667 13 C 0.496 3.504 14 O -0.535 6.535 15 C 0.510 3.490 16 O -0.505 6.505 17 N -0.639 5.639 18 C 0.144 3.856 19 C -0.132 4.132 20 C -0.201 4.201 21 S 0.110 5.890 22 C -0.262 4.262 23 H 0.030 0.970 24 H 0.095 0.905 25 H 0.016 0.984 26 H 0.266 0.734 27 H 0.403 0.597 28 H 0.424 0.576 29 H 0.160 0.840 30 H 0.169 0.831 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 -3.412 -17.740 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.733 3.267 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.201 1.201 12 N -0.316 5.316 13 C 0.274 3.726 14 O -0.414 6.414 15 C 0.292 3.708 16 O -0.378 6.378 17 N -0.286 5.286 18 C 0.038 3.962 19 C -0.163 4.163 20 C -0.337 4.337 21 S 0.371 5.629 22 C -0.400 4.400 23 H 0.049 0.951 24 H 0.113 0.887 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.237 0.763 28 H 0.262 0.738 29 H 0.177 0.823 30 H 0.186 0.814 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.862 -3.350 -19.024 19.919 hybrid contribution 0.087 -0.343 2.316 2.343 sum 4.949 -3.693 -16.708 17.812 Atomic orbital electron populations 1.22104 0.97787 0.99598 1.01240 1.18988 0.91477 0.94153 0.79297 0.92746 1.21154 1.32924 1.13533 0.90033 0.91767 1.24876 0.94660 0.94924 0.99102 1.69887 1.35589 1.22358 1.24225 0.86440 0.79231 0.79615 0.81461 1.21069 1.20026 1.20063 1.46508 1.61192 1.14531 1.09322 1.19616 0.81242 0.87280 0.84495 1.90736 1.50718 1.15216 1.84698 1.20975 0.78175 0.86953 0.84703 1.90717 1.47129 1.15178 1.84787 1.43122 1.59586 1.17360 1.08564 1.16839 0.96538 0.96584 0.86276 1.20286 0.97964 0.97445 1.00616 1.25513 1.07160 1.05951 0.95049 1.84099 1.41661 1.27819 1.09321 1.25156 1.10581 1.09720 0.94591 0.95068 0.88675 0.96460 0.92362 0.76294 0.73795 0.82274 0.81373 0.81399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.51 2.56 -69.08 -0.18 6.34 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.54 -14.09 8.73 -34.44 -0.30 -14.39 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.67 -14.11 5.06 -55.42 -0.28 -14.39 16 13 C 0.50 9.80 7.85 -11.66 -0.09 9.71 16 14 O -0.53 -11.66 16.15 5.48 0.09 -11.57 16 15 C 0.51 8.59 7.75 -11.66 -0.09 8.50 16 16 O -0.50 -9.02 13.95 5.44 0.08 -8.95 16 17 N -0.64 -8.90 5.40 -11.30 -0.06 -8.96 16 18 C 0.14 1.86 6.35 -85.21 -0.54 1.31 16 19 C -0.13 -1.69 8.85 -41.07 -0.36 -2.05 16 20 C -0.20 -2.04 11.21 29.02 0.33 -1.72 16 21 S 0.11 1.01 23.33 -107.50 -2.51 -1.50 16 22 C -0.26 -2.75 11.19 29.22 0.33 -2.42 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.40 7.92 8.01 -40.82 -0.33 7.59 16 28 H 0.42 5.23 8.30 -40.82 -0.34 4.89 16 29 H 0.16 2.24 6.28 -52.49 -0.33 1.91 16 30 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -29.08 289.80 -6.31 -35.39 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -2.94 Total: 10.17 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.66 Total: 3.74 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.29 Total: -47.02 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.16 Total: -20.52 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.08 -6.31 -35.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190127627.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.854 kcal (2) G-P(sol) polarization free energy of solvation -29.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds