Wall clock time and date at job start Mon Mar 30 2020 01:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47036 * 163.03819 * 3 2 1 5 5 C 1.37102 * 120.00290 * 264.13838 * 4 3 2 6 6 H 1.07996 * 120.00068 * 197.43718 * 5 4 3 7 7 C 1.38949 * 119.99557 * 17.43539 * 5 4 3 8 8 N 1.31417 * 120.00401 * 21.52843 * 7 5 4 9 9 Si 1.86803 * 119.99883 * 201.52544 * 7 5 4 10 10 H 1.48497 * 109.47275 * 90.00320 * 9 7 5 11 11 H 1.48507 * 109.46982 * 210.00317 * 9 7 5 12 12 H 1.48495 * 109.47124 * 330.00073 * 9 7 5 13 13 C 1.34778 * 119.99931 * 84.14274 * 4 3 2 14 14 O 1.21293 * 119.99744 * 179.97438 * 13 4 3 15 15 C 1.50692 * 120.00232 * 359.97438 * 13 4 3 16 16 N 1.46503 * 109.47313 * 180.02562 * 15 13 4 17 17 C 1.44545 * 120.61538 * 270.00317 * 16 15 13 18 18 C 1.53425 * 111.71496 * 180.02562 * 17 16 15 19 19 S 1.82071 * 103.93856 * 359.78578 * 18 17 16 20 20 C 1.32999 * 120.61045 * 90.03050 * 16 15 13 21 21 O 1.21621 * 125.20497 * 359.93884 * 20 16 15 22 22 H 4.40636 * 5.51422 * 180.02562 * 4 1 2 23 23 H 1.09005 * 109.46731 * 43.03558 * 3 2 1 24 24 H 1.09001 * 109.47015 * 283.03952 * 3 2 1 25 25 H 0.96990 * 120.00198 * 180.02562 * 8 7 5 26 26 H 1.09008 * 109.46856 * 60.00187 * 15 13 4 27 27 H 1.09001 * 109.47268 * 300.00519 * 15 13 4 28 28 H 1.08996 * 109.03812 * 300.61781 * 17 16 15 29 29 H 1.09004 * 109.03630 * 59.42877 * 17 16 15 30 30 H 1.08992 * 110.53473 * 118.61634 * 18 17 16 31 31 H 1.09000 * 110.52883 * 241.24281 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.3219 -0.4029 5 6 3.4765 1.5571 -1.7094 6 1 4.0886 2.4103 -1.9619 7 6 3.0363 0.6977 -2.7086 8 7 1.9852 -0.0642 -2.5040 9 14 3.9385 0.6253 -4.3427 10 1 5.0072 -0.4034 -4.2729 11 1 2.9810 0.2721 -5.4215 12 1 4.5444 1.9496 -4.6326 13 6 3.2456 2.3064 0.5108 14 8 3.6499 3.4003 0.1772 15 6 2.8685 2.0482 1.9467 16 7 3.0777 3.2663 2.7332 17 6 4.3496 3.5216 3.3707 18 6 4.3432 4.8498 4.1388 19 16 2.6667 5.5058 3.8664 20 6 2.1005 4.1574 2.8744 21 8 0.9889 4.0616 2.3904 22 1 -1.0502 -0.0003 0.0003 23 1 3.0097 -0.7504 -0.7014 24 1 3.0095 -0.2310 1.0012 25 1 1.6782 -0.6643 -3.2013 26 1 3.4888 1.2460 2.3466 27 1 1.8194 1.7572 2.0002 28 1 4.5686 2.7104 4.0649 29 1 5.1287 3.5550 2.6090 30 1 4.5225 4.6785 5.2001 31 1 5.0901 5.5308 3.7309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281494764.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:53 Heat of formation + Delta-G solvation = -6.864260 kcal Electronic energy + Delta-G solvation = -18395.501012 eV Core-core repulsion = 15384.160447 eV Total energy + Delta-G solvation = -3011.340565 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.45302 -40.00310 -37.82165 -36.98360 -34.12908 -33.07629 -32.44783 -29.50128 -28.15533 -26.53827 -25.48990 -22.60602 -20.76791 -19.74414 -19.27714 -18.64383 -18.23184 -17.71577 -17.14302 -16.33984 -16.13187 -15.95564 -15.48957 -15.23777 -15.18716 -14.54149 -14.38814 -13.99890 -13.81656 -13.52283 -13.08575 -13.04195 -12.78625 -12.48086 -12.18983 -11.96086 -11.21940 -11.17362 -11.09125 -10.83247 -10.63515 -10.05734 -9.87543 -9.23982 -8.34341 -5.96110 0.01289 0.90896 1.08608 1.34768 1.41944 1.52919 1.78989 2.01343 2.16777 2.30149 2.36191 3.01165 3.14036 3.32413 3.81997 3.89873 3.96681 4.07472 4.29283 4.46878 4.58846 4.63911 4.73912 4.93180 4.95742 5.38857 5.45148 5.84226 6.00204 6.37716 6.50135 7.10176 7.11358 7.36518 7.90772 8.63575 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.027998 B = 0.005807 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.837384 B = 4820.765308 C = 5307.730468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.155 4.155 3 C 0.231 3.769 4 N -0.446 5.446 5 C -0.352 4.352 6 H 0.074 0.926 7 C 0.003 3.997 8 N -0.871 5.871 9 Si 0.986 3.014 10 H -0.258 1.258 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.423 3.577 14 O -0.622 6.622 15 C 0.116 3.884 16 N -0.585 5.585 17 C 0.089 3.911 18 C -0.076 4.076 19 S -0.201 6.201 20 C 0.530 3.470 21 O -0.545 6.545 22 H 0.227 0.773 23 H 0.099 0.901 24 H 0.110 0.890 25 H 0.273 0.727 26 H 0.152 0.848 27 H 0.094 0.906 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.966 -0.994 14.280 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.157 4.157 3 C 0.109 3.891 4 N -0.165 5.165 5 C -0.480 4.480 6 H 0.092 0.908 7 C -0.200 4.200 8 N -0.508 5.508 9 Si 0.810 3.190 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.211 3.789 14 O -0.508 6.508 15 C -0.014 4.014 16 N -0.319 5.319 17 C -0.034 4.034 18 C -0.224 4.224 19 S 0.025 5.975 20 C 0.210 3.790 21 O -0.426 6.426 22 H 0.243 0.757 23 H 0.116 0.884 24 H 0.128 0.872 25 H 0.083 0.917 26 H 0.170 0.830 27 H 0.112 0.888 28 H 0.154 0.846 29 H 0.105 0.895 30 H 0.179 0.821 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.982 0.361 14.149 15.366 hybrid contribution 0.101 -0.905 -1.920 2.125 sum 6.083 -0.544 12.228 13.669 Atomic orbital electron populations 1.25147 0.96520 1.00318 1.04825 1.23570 0.95226 1.00053 0.96822 1.18466 0.84048 0.86002 1.00588 1.43923 1.55479 1.09417 1.07649 1.19551 1.31753 1.13564 0.83126 0.90782 1.25997 0.95332 0.96450 1.02260 1.70190 1.19699 1.25061 1.35865 0.85059 0.78304 0.78609 0.77065 1.18299 1.20641 1.20547 1.21254 0.83918 0.84286 0.89401 1.90496 1.52806 1.25229 1.82301 1.21385 1.04405 0.87539 0.88051 1.47597 1.13312 1.21307 1.49685 1.21797 0.83665 0.99415 0.98522 1.24496 0.92970 0.97360 1.07591 1.87178 1.17981 1.29788 1.62600 1.22231 0.86742 0.86604 0.83455 1.90819 1.22425 1.76269 1.53103 0.75657 0.88351 0.87197 0.91729 0.83007 0.88782 0.84587 0.89520 0.82071 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.43 19.25 74.32 1.43 -9.00 16 2 C -0.16 -6.87 10.87 31.12 0.34 -6.53 16 3 C 0.23 9.63 4.91 84.57 0.42 10.04 16 4 N -0.45 -22.24 2.60 -645.44 -1.68 -23.92 16 5 C -0.35 -19.66 9.33 84.04 0.78 -18.88 16 6 H 0.07 4.48 7.38 -2.91 -0.02 4.46 16 7 C 0.00 0.18 4.87 84.93 0.41 0.59 16 8 N -0.87 -45.38 9.48 21.66 0.21 -45.17 16 9 Si 0.99 41.72 29.60 68.60 2.03 43.75 16 10 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 C 0.42 20.30 7.63 87.65 0.67 20.97 16 14 O -0.62 -35.09 16.08 -3.07 -0.05 -35.14 16 15 C 0.12 4.05 4.65 85.63 0.40 4.45 16 16 N -0.59 -18.98 2.27 -844.68 -1.91 -20.89 16 17 C 0.09 1.75 6.80 86.89 0.59 2.34 16 18 C -0.08 -1.17 7.42 72.12 0.54 -0.63 16 19 S -0.20 -5.71 23.25 -56.49 -1.31 -7.02 16 20 C 0.53 20.64 8.27 130.07 1.08 21.72 16 21 O -0.54 -26.71 17.27 -4.10 -0.07 -26.78 16 22 H 0.23 7.69 7.80 -4.41 -0.03 7.65 16 23 H 0.10 4.34 6.44 -2.38 -0.02 4.32 16 24 H 0.11 3.36 6.69 -2.39 -0.02 3.34 16 25 H 0.27 13.46 8.31 -92.72 -0.77 12.69 16 26 H 0.15 3.58 7.35 -2.38 -0.02 3.56 16 27 H 0.09 3.60 7.01 -2.39 -0.02 3.59 16 28 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -81.44 289.43 5.01 -76.43 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.15 Total: 13.68 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 6.65 Total: 25.07 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -3.39 Total: -89.98 kcal Atomic # 8 Polarization: -61.80 SS G_CDS: -0.12 Total: -61.92 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.31 Total: -7.02 kcal Total: -81.44 5.01 -76.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281494764.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.565 kcal (2) G-P(sol) polarization free energy of solvation -81.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds