Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35681 * 116.99739 * 2 1 4 4 C 1.38662 * 119.64596 * 180.02562 * 3 2 1 5 5 C 1.39135 * 119.02531 * 180.27521 * 4 3 2 6 6 N 1.39564 * 120.82920 * 179.72233 * 5 4 3 7 7 C 1.34769 * 120.00081 * 212.44713 * 6 5 4 8 8 O 1.21284 * 119.99925 * 5.25870 * 7 6 5 9 9 C 1.50701 * 120.00176 * 185.26092 * 7 6 5 10 10 S 1.80997 * 109.47154 * 179.97438 * 9 7 6 11 11 C 1.76205 * 100.00007 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99702 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00295 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00130 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99671 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47019 * 90.00855 * 15 13 11 17 17 H 1.48504 * 109.47003 * 210.00366 * 15 13 11 18 18 H 1.48504 * 109.47482 * 330.00522 * 15 13 11 19 19 C 1.39565 * 118.33963 * 359.46413 * 5 4 3 20 20 C 1.37804 * 119.20323 * 0.56339 * 19 5 4 21 21 N 1.32057 * 120.90730 * 359.69453 * 20 19 5 22 22 H 1.09005 * 109.47274 * 299.99480 * 1 2 3 23 23 H 1.08994 * 109.47407 * 59.99731 * 1 2 3 24 24 H 1.09004 * 109.46597 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.49225 * 0.02562 * 4 3 2 26 26 H 0.96996 * 120.00003 * 32.44354 * 6 5 4 27 27 H 1.08994 * 109.46911 * 299.99767 * 9 7 6 28 28 H 1.09001 * 109.47059 * 59.99658 * 9 7 6 29 29 H 0.96992 * 119.99723 * 179.97438 * 14 13 11 30 30 H 1.08004 * 120.39617 * 180.25946 * 19 5 4 31 31 H 1.08001 * 119.54830 * 179.72696 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4301 1.2730 -0.0005 5 6 4.0482 2.5195 0.0053 6 7 5.4396 2.6278 0.0108 7 6 6.0327 3.6603 0.6421 8 8 5.3649 4.4420 1.2855 9 6 7.5256 3.8435 0.5487 10 16 8.0142 5.3071 1.4949 11 6 9.7544 5.2826 1.2194 12 1 10.1941 4.5051 0.6124 13 6 10.5601 6.2626 1.7825 14 7 11.8600 6.2446 1.5762 15 14 9.7994 7.6078 2.8318 16 1 9.7669 7.1702 4.2504 17 1 10.6111 8.8458 2.7143 18 1 8.4156 7.8770 2.3649 19 6 3.2421 3.6588 0.0000 20 6 1.8718 3.5129 0.0011 21 7 1.3173 2.3144 0.0010 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 4.0205 0.3687 -0.0014 26 1 5.9799 1.9600 -0.4397 27 1 8.0256 2.9643 0.9548 28 1 7.8110 3.9741 -0.4951 29 1 12.4229 6.9296 1.9694 30 1 3.6869 4.6430 0.0001 31 1 1.2427 4.3908 0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289601998.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = -33.112657 kcal Electronic energy + Delta-G solvation = -17010.066829 eV Core-core repulsion = 13997.588048 eV Total energy + Delta-G solvation = -3012.478781 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03077 -39.67682 -37.83249 -35.18972 -32.51461 -31.56884 -30.84580 -29.06938 -27.38183 -25.70290 -23.69818 -23.17274 -20.80012 -18.89073 -18.05134 -17.19433 -16.61571 -16.25050 -16.07881 -15.91936 -15.21730 -15.05162 -14.28176 -14.20369 -13.89655 -13.68568 -13.55926 -12.86951 -12.50287 -12.42825 -11.97953 -11.45234 -11.35279 -11.07543 -10.95939 -10.73346 -10.16631 -9.91067 -9.60631 -9.07801 -8.86284 -8.62855 -8.59845 -7.02983 -6.35974 -4.09663 0.97376 1.14484 2.43396 2.65906 2.86990 3.21370 3.28122 3.43973 3.50742 3.69593 4.20654 4.25773 4.48868 4.79244 4.95099 4.99137 5.03027 5.06891 5.09951 5.18165 5.36091 5.41714 5.57268 5.68756 5.83847 5.98655 6.01054 6.51194 7.06241 7.19087 7.74637 7.86840 8.07761 8.34429 9.09575 10.73143 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.057477 B = 0.003478 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.032068 B = 8048.317134 C = 8380.770421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.335 3.665 4 C -0.227 4.227 5 C 0.237 3.763 6 N -0.674 5.674 7 C 0.533 3.467 8 O -0.490 6.490 9 C -0.125 4.125 10 S -0.137 6.137 11 C -0.524 4.524 12 H 0.090 0.910 13 C 0.097 3.903 14 N -0.878 5.878 15 Si 0.856 3.144 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.235 1.235 19 C -0.212 4.212 20 C 0.156 3.844 21 N -0.556 5.556 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.143 0.857 26 H 0.416 0.584 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.272 0.728 30 H 0.151 0.849 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.759 -10.491 -5.295 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.217 6.217 3 C 0.156 3.844 4 C -0.250 4.250 5 C 0.132 3.868 6 N -0.321 5.321 7 C 0.320 3.680 8 O -0.361 6.361 9 C -0.276 4.276 10 S 0.090 5.910 11 C -0.671 4.671 12 H 0.108 0.892 13 C -0.113 4.113 14 N -0.514 5.514 15 Si 0.681 3.319 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.159 1.159 19 C -0.234 4.234 20 C 0.001 3.999 21 N -0.282 5.282 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.112 0.888 25 H 0.161 0.839 26 H 0.253 0.747 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -20.386 -9.407 -4.185 22.839 hybrid contribution 1.770 -0.489 -0.475 1.897 sum -18.616 -9.896 -4.660 21.592 Atomic orbital electron populations 1.22834 0.77244 1.02740 1.02516 1.86214 1.22880 1.24596 1.87985 1.19391 0.88551 0.84756 0.91717 1.20613 0.92615 0.97757 1.14055 1.17674 0.83739 0.92843 0.92519 1.43617 1.04190 1.28948 1.55345 1.20596 0.90405 0.79529 0.77459 1.90735 1.65341 1.42225 1.37837 1.23300 0.92189 1.05731 1.06363 1.84828 1.09289 1.30355 1.66578 1.22281 0.88862 1.17504 1.38480 0.89230 1.24711 0.94200 0.97127 0.95218 1.69930 1.03544 1.34637 1.43304 0.86742 0.81681 0.81740 0.81717 1.19147 1.19831 1.15925 1.22080 0.94396 0.99899 1.07070 1.22247 0.92252 0.93504 0.91897 1.67330 1.40821 0.98726 1.21329 0.92287 0.92311 0.88781 0.83909 0.74747 0.87886 0.87711 0.91824 0.83118 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.31 -3.50 10.47 -18.74 -0.20 -3.70 16 3 C 0.33 4.18 7.48 -17.17 -0.13 4.05 16 4 C -0.23 -2.67 9.98 -39.09 -0.39 -3.06 16 5 C 0.24 3.05 6.32 -83.51 -0.53 2.52 16 6 N -0.67 -8.28 5.35 -9.72 -0.05 -8.33 16 7 C 0.53 8.69 7.62 -10.99 -0.08 8.61 16 8 O -0.49 -9.66 13.57 5.55 0.08 -9.59 16 9 C -0.13 -2.22 6.16 36.01 0.22 -1.99 16 10 S -0.14 -3.29 18.55 -107.50 -1.99 -5.28 16 11 C -0.52 -14.56 10.04 30.94 0.31 -14.25 16 12 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 13 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 14 N -0.88 -25.92 13.97 55.49 0.78 -25.15 16 15 Si 0.86 21.18 27.74 -169.99 -4.71 16.47 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 18 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 19 C -0.21 -2.81 8.73 -39.25 -0.34 -3.15 16 20 C 0.16 1.83 11.17 -17.61 -0.20 1.64 16 21 N -0.56 -6.99 9.21 -13.41 -0.12 -7.11 16 22 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 23 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 24 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 26 H 0.42 3.63 8.82 -40.82 -0.36 3.27 16 27 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 28 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.15 2.17 6.48 -52.48 -0.34 1.83 16 31 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 291.58 15.07 4.39 4.39 Total: -1.00 -33.22 291.58 -5.25 -38.48 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -3.23 Total: 1.41 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -0.18 Total: -1.59 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.60 Total: -40.59 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.12 Total: -13.29 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.47 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -1.99 Total: -5.28 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.22 -5.25 -38.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289601998.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.363 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds