Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35681 * 116.99739 * 2 1 4 4 C 1.38662 * 119.64596 * 180.02562 * 3 2 1 5 5 C 1.39135 * 119.02531 * 180.27521 * 4 3 2 6 6 N 1.39564 * 120.82920 * 179.72233 * 5 4 3 7 7 C 1.34769 * 120.00081 * 212.44713 * 6 5 4 8 8 O 1.21284 * 119.99925 * 5.25870 * 7 6 5 9 9 C 1.50701 * 120.00176 * 185.26092 * 7 6 5 10 10 S 1.80997 * 109.47154 * 179.97438 * 9 7 6 11 11 C 1.76205 * 100.00007 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99702 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00295 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00130 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99671 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47019 * 90.00855 * 15 13 11 17 17 H 1.48504 * 109.47003 * 210.00366 * 15 13 11 18 18 H 1.48504 * 109.47482 * 330.00522 * 15 13 11 19 19 C 1.39565 * 118.33963 * 359.46413 * 5 4 3 20 20 C 1.37804 * 119.20323 * 0.56339 * 19 5 4 21 21 N 1.32057 * 120.90730 * 359.69453 * 20 19 5 22 22 H 1.09005 * 109.47274 * 299.99480 * 1 2 3 23 23 H 1.08994 * 109.47407 * 59.99731 * 1 2 3 24 24 H 1.09004 * 109.46597 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.49225 * 0.02562 * 4 3 2 26 26 H 0.96996 * 120.00003 * 32.44354 * 6 5 4 27 27 H 1.08994 * 109.46911 * 299.99767 * 9 7 6 28 28 H 1.09001 * 109.47059 * 59.99658 * 9 7 6 29 29 H 0.96992 * 119.99723 * 179.97438 * 14 13 11 30 30 H 1.08004 * 120.39617 * 180.25946 * 19 5 4 31 31 H 1.08001 * 119.54830 * 179.72696 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4301 1.2730 -0.0005 5 6 4.0482 2.5195 0.0053 6 7 5.4396 2.6278 0.0108 7 6 6.0327 3.6603 0.6421 8 8 5.3649 4.4420 1.2855 9 6 7.5256 3.8435 0.5487 10 16 8.0142 5.3071 1.4949 11 6 9.7544 5.2826 1.2194 12 1 10.1941 4.5051 0.6124 13 6 10.5601 6.2626 1.7825 14 7 11.8600 6.2446 1.5762 15 14 9.7994 7.6078 2.8318 16 1 9.7669 7.1702 4.2504 17 1 10.6111 8.8458 2.7143 18 1 8.4156 7.8770 2.3649 19 6 3.2421 3.6588 0.0000 20 6 1.8718 3.5129 0.0011 21 7 1.3173 2.3144 0.0010 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 4.0205 0.3687 -0.0014 26 1 5.9799 1.9600 -0.4397 27 1 8.0256 2.9643 0.9548 28 1 7.8110 3.9741 -0.4951 29 1 12.4229 6.9296 1.9694 30 1 3.6869 4.6430 0.0001 31 1 1.2427 4.3908 0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289601998.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = -58.387852 kcal Electronic energy + Delta-G solvation = -17011.162844 eV Core-core repulsion = 13997.588048 eV Total energy + Delta-G solvation = -3013.574796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.04576 -40.78384 -38.76781 -36.32492 -34.67384 -32.69887 -31.77818 -30.33935 -28.11977 -27.85300 -24.63816 -24.20863 -21.96112 -20.10275 -19.66327 -18.43785 -17.69752 -17.29669 -17.13885 -17.01279 -16.90006 -16.37197 -15.83793 -15.27560 -15.06766 -14.87204 -14.81843 -14.47630 -13.81785 -13.36259 -13.31226 -13.02785 -12.72789 -12.71513 -12.31065 -11.96754 -11.86882 -11.35437 -11.17346 -10.68116 -10.56089 -9.86793 -9.55240 -9.00865 -8.51683 -6.22988 0.00197 0.17421 0.91802 1.32071 1.39350 1.43069 1.51094 1.83927 2.23932 2.29301 2.66869 2.74779 2.86940 3.35491 3.54610 3.94114 4.08642 4.13217 4.19013 4.42938 4.47068 4.47414 4.52372 4.71229 4.82635 5.01338 5.06246 5.50070 5.70682 6.12338 6.15780 6.21401 6.81603 6.88655 6.93585 8.60568 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.057477 B = 0.003478 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.032068 B = 8048.317134 C = 8380.770421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.317 6.317 3 C 0.324 3.676 4 C -0.221 4.221 5 C 0.223 3.777 6 N -0.652 5.652 7 C 0.541 3.459 8 O -0.528 6.528 9 C -0.111 4.111 10 S -0.169 6.169 11 C -0.528 4.528 12 H 0.065 0.935 13 C 0.045 3.955 14 N -0.917 5.917 15 Si 0.913 3.087 16 H -0.263 1.263 17 H -0.261 1.261 18 H -0.234 1.234 19 C -0.226 4.226 20 C 0.158 3.842 21 N -0.563 5.563 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.123 0.877 25 H 0.165 0.835 26 H 0.434 0.566 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.277 0.723 30 H 0.137 0.863 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.403 -11.467 -5.495 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.145 3.855 4 C -0.244 4.244 5 C 0.119 3.881 6 N -0.300 5.300 7 C 0.329 3.671 8 O -0.402 6.402 9 C -0.262 4.262 10 S 0.057 5.943 11 C -0.676 4.676 12 H 0.084 0.916 13 C -0.160 4.160 14 N -0.555 5.555 15 Si 0.735 3.265 16 H -0.188 1.188 17 H -0.185 1.185 18 H -0.158 1.158 19 C -0.249 4.249 20 C 0.003 3.997 21 N -0.289 5.289 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.141 0.859 25 H 0.183 0.817 26 H 0.275 0.725 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.155 0.845 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -22.039 -10.433 -4.417 24.781 hybrid contribution 2.157 -0.361 -0.507 2.245 sum -19.882 -10.794 -4.924 23.153 Atomic orbital electron populations 1.23074 0.75648 1.04682 1.02355 1.86210 1.24483 1.23971 1.87728 1.19658 0.89052 0.85170 0.91608 1.20773 0.92687 0.98015 1.12944 1.17768 0.83556 0.93322 0.93431 1.43232 1.04375 1.28065 1.54337 1.20221 0.89518 0.79978 0.77425 1.90733 1.65768 1.43913 1.39825 1.23260 0.93546 1.03064 1.06331 1.84735 1.06421 1.34754 1.68385 1.22452 0.91107 1.16571 1.37479 0.91648 1.25559 0.94634 0.99351 0.96485 1.70012 1.04827 1.35886 1.44747 0.85886 0.81017 0.79528 0.80065 1.18816 1.18548 1.15784 1.22096 0.95232 0.99507 1.08074 1.22627 0.92080 0.94175 0.90831 1.67398 1.41062 0.98985 1.21423 0.92633 0.92246 0.85876 0.81719 0.72547 0.85919 0.85771 0.91375 0.84537 0.79467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 113.37 1.18 1.70 16 2 O -0.32 -6.48 10.47 -89.98 -0.94 -7.42 16 3 C 0.32 7.46 7.48 84.72 0.63 8.09 16 4 C -0.22 -4.70 9.98 22.59 0.23 -4.47 16 5 C 0.22 5.34 6.32 38.45 0.24 5.58 16 6 N -0.65 -14.58 5.35 -303.07 -1.62 -16.20 16 7 C 0.54 16.81 7.62 87.66 0.67 17.47 16 8 O -0.53 -20.42 13.57 -3.04 -0.04 -20.46 16 9 C -0.11 -3.75 6.16 71.24 0.44 -3.32 16 10 S -0.17 -8.05 18.55 -56.49 -1.05 -9.10 16 11 C -0.53 -29.55 10.04 67.95 0.68 -28.87 16 12 H 0.07 3.84 8.03 -2.91 -0.02 3.82 16 13 C 0.05 2.58 5.50 84.86 0.47 3.05 16 14 N -0.92 -54.73 13.97 21.65 0.30 -54.43 16 15 Si 0.91 43.73 27.74 68.60 1.90 45.64 16 16 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.23 -11.08 6.74 99.48 0.67 -10.41 16 19 C -0.23 -5.76 8.73 22.49 0.20 -5.57 16 20 C 0.16 3.48 11.17 84.56 0.94 4.43 16 21 N -0.56 -13.18 9.21 -309.16 -2.85 -16.02 16 22 H 0.05 0.82 8.10 -2.38 -0.02 0.81 16 23 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 24 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 26 H 0.43 6.30 8.82 -92.71 -0.82 5.48 16 27 H 0.12 3.70 8.14 -2.40 -0.02 3.68 16 28 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 29 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.14 3.90 6.48 -2.91 -0.02 3.88 16 31 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -71.45 291.58 1.69 -69.76 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.31 Total: 10.14 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.68 Total: -1.90 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -4.17 Total: -86.66 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.98 Total: -27.89 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.90 Total: 45.64 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.05 Total: -9.10 kcal Total: -71.45 1.69 -69.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289601998.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.373 kcal (2) G-P(sol) polarization free energy of solvation -71.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds