Wall clock time and date at job start Mon Mar 30 2020 01:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38162 * 120.02447 * 2 1 4 4 C 1.38346 * 120.04623 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 119.95687 * 179.97438 * 4 3 2 6 6 C 1.38396 * 120.08460 * 359.70159 * 4 3 2 7 7 C 1.38115 * 120.04062 * 0.55503 * 6 4 3 8 8 C 1.38704 * 120.02271 * 179.97438 * 2 1 3 9 9 O 1.35944 * 120.04040 * 0.02562 * 8 2 1 10 10 C 1.34259 * 116.99814 * 273.99830 * 9 8 2 11 11 O 1.20824 * 119.99942 * 5.01028 * 10 9 8 12 12 C 1.50701 * 119.99882 * 185.00316 * 10 9 8 13 13 C 1.52999 * 109.47132 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47149 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00158 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99789 * 180.02562 * 14 13 12 17 17 N 1.31507 * 119.99986 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99739 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46845 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47030 * 119.99647 * 18 16 14 21 21 H 1.48496 * 109.46876 * 239.99490 * 18 16 14 22 22 H 1.09005 * 109.47468 * 270.01936 * 1 2 3 23 23 H 1.08998 * 109.47323 * 30.02189 * 1 2 3 24 24 H 1.09003 * 109.47051 * 150.02348 * 1 2 3 25 25 H 1.08002 * 119.97433 * 359.97438 * 3 2 1 26 26 H 1.07999 * 119.98178 * 180.27238 * 6 4 3 27 27 H 1.07997 * 120.02279 * 179.74687 * 7 6 4 28 28 H 1.08995 * 109.47358 * 300.00811 * 12 10 9 29 29 H 1.09007 * 109.46768 * 60.00691 * 12 10 9 30 30 H 1.09003 * 109.47452 * 300.00265 * 13 12 10 31 31 H 1.08998 * 109.47012 * 60.00357 * 13 12 10 32 32 H 0.97007 * 120.00186 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1962 0.0000 4 6 3.5817 1.1967 0.0005 5 17 4.4480 2.7011 -0.0001 6 6 4.2759 -0.0005 0.0073 7 6 3.5885 -1.1984 0.0020 8 6 2.2009 -1.2009 0.0005 9 8 1.5225 -2.3790 0.0005 10 6 1.1456 -2.8653 1.1939 11 8 1.3317 -2.2171 2.1964 12 6 0.4902 -4.2194 1.2828 13 6 0.1624 -4.5323 2.7441 14 6 -0.4924 -5.8867 2.8331 15 1 -0.6585 -6.4662 1.9370 16 6 -0.8803 -6.3857 4.0586 17 7 -0.6784 -5.6799 5.1497 18 14 -1.6926 -8.0643 4.1688 19 1 -1.8050 -8.6500 2.8088 20 1 -0.8713 -8.9562 5.0261 21 1 -3.0476 -7.9205 4.7590 22 1 -0.3634 0.0003 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6582 2.1315 -0.0004 26 1 5.3559 0.0019 0.0122 27 1 4.1305 -2.1325 0.0031 28 1 -0.4289 -4.2174 0.6970 29 1 1.1687 -4.9777 0.8918 30 1 1.0814 -4.5342 3.3303 31 1 -0.5161 -3.7740 3.1347 32 1 -0.9510 -6.0311 6.0119 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291252766.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:55 Heat of formation + Delta-G solvation = -93.405197 kcal Electronic energy + Delta-G solvation = -17403.839563 eV Core-core repulsion = 14354.409843 eV Total energy + Delta-G solvation = -3049.429719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.47241 -40.08331 -38.15702 -37.29355 -35.67000 -33.91110 -33.21251 -31.29333 -28.49854 -27.78297 -25.05480 -23.59406 -22.78326 -21.51481 -19.38820 -18.70336 -18.06128 -17.68453 -17.32965 -16.49155 -16.35976 -15.63719 -15.13072 -14.70739 -14.60033 -14.39027 -14.27707 -13.87175 -13.66475 -13.31231 -13.25165 -12.91131 -12.85044 -12.48942 -12.29794 -12.12491 -12.02806 -11.78150 -11.74636 -11.55763 -11.28632 -10.58973 -10.05186 -9.65471 -8.20288 -6.33924 -0.27526 0.08400 0.98039 1.09130 1.44358 1.44839 1.58190 1.68447 2.41679 2.51080 3.14060 3.57531 3.59628 3.76474 4.01297 4.16048 4.28094 4.39172 4.42370 4.57270 4.60089 4.70338 4.82274 4.96313 5.02210 5.06870 5.23470 5.26530 5.46149 5.53390 5.64883 5.80001 6.12332 6.78170 6.85970 7.36601 8.92379 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.046172 B = 0.003401 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.279316 B = 8230.448373 C = 8296.541853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 C -0.102 4.102 4 C -0.035 4.035 5 Cl -0.055 7.055 6 C -0.102 4.102 7 C -0.113 4.113 8 C 0.057 3.943 9 O -0.292 6.292 10 C 0.464 3.536 11 O -0.524 6.524 12 C -0.091 4.091 13 C 0.039 3.961 14 C -0.542 4.542 15 H 0.079 0.921 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.253 1.253 20 H -0.281 1.281 21 H -0.281 1.281 22 H 0.063 0.937 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.161 0.839 26 H 0.165 0.835 27 H 0.152 0.848 28 H 0.121 0.879 29 H 0.121 0.879 30 H -0.010 1.010 31 H -0.009 1.009 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.470 12.888 -14.642 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.085 4.085 3 C -0.120 4.120 4 C -0.061 4.061 5 Cl -0.026 7.026 6 C -0.120 4.120 7 C -0.132 4.132 8 C 0.015 3.985 9 O -0.207 6.207 10 C 0.310 3.690 11 O -0.411 6.411 12 C -0.128 4.128 13 C 0.001 3.999 14 C -0.580 4.580 15 H 0.097 0.903 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.797 3.203 19 H -0.176 1.176 20 H -0.207 1.207 21 H -0.207 1.207 22 H 0.082 0.918 23 H 0.122 0.878 24 H 0.089 0.911 25 H 0.179 0.821 26 H 0.183 0.817 27 H 0.169 0.831 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.009 0.991 31 H 0.010 0.990 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.573 13.244 -14.163 20.817 hybrid contribution -0.212 -0.468 0.727 0.891 sum 7.361 12.776 -13.435 19.948 Atomic orbital electron populations 1.20835 0.89150 1.04802 1.02731 1.20290 0.98017 0.91675 0.98562 1.21049 0.92189 0.98460 1.00305 1.21091 0.92653 0.88007 1.04393 1.98375 1.76346 1.31053 1.96795 1.21154 1.01829 0.89282 0.99766 1.21439 0.92171 1.00176 0.99374 1.18885 0.91285 0.84394 1.03904 1.84665 1.66929 1.35415 1.33725 1.25063 0.74821 0.89031 0.80077 1.90662 1.52518 1.60228 1.37650 1.21588 1.02103 0.88015 1.01113 1.18812 0.95344 0.95851 0.89852 1.21656 1.39445 1.02865 0.94022 0.90307 1.26079 0.96537 1.02140 0.95388 1.70160 1.48445 1.39910 0.98990 0.85279 0.77665 0.78402 0.78957 1.17602 1.20720 1.20704 0.91842 0.87786 0.91112 0.82111 0.81719 0.83057 0.86140 0.86123 0.99143 0.99022 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 9.62 71.23 0.68 -2.15 16 2 C -0.08 -2.25 5.88 -19.77 -0.12 -2.37 16 3 C -0.10 -2.25 9.48 22.28 0.21 -2.04 16 4 C -0.03 -0.74 6.32 22.33 0.14 -0.60 16 5 Cl -0.05 -1.00 28.95 -2.72 -0.08 -1.08 16 6 C -0.10 -2.16 9.82 22.28 0.22 -1.94 16 7 C -0.11 -2.86 9.99 22.36 0.22 -2.63 16 8 C 0.06 1.68 4.90 22.50 0.11 1.79 16 9 O -0.29 -9.43 9.11 4.36 0.04 -9.39 16 10 C 0.46 17.84 7.69 71.24 0.55 18.39 16 11 O -0.52 -24.17 15.72 21.97 0.35 -23.82 16 12 C -0.09 -3.52 5.75 29.85 0.17 -3.34 16 13 C 0.04 2.04 4.26 29.85 0.13 2.17 16 14 C -0.54 -29.55 9.11 25.60 0.23 -29.31 16 15 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 16 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 17 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 18 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 19 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.10 1.76 8.09 -2.39 -0.02 1.74 16 24 H 0.07 1.73 7.53 -2.39 -0.02 1.71 16 25 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 26 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 27 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 28 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 29 H 0.12 4.08 8.14 -2.38 -0.02 4.06 16 30 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 31 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 32 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -68.65 302.68 6.76 -61.90 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.12 Total: 6.23 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 3.02 Total: -21.77 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.28 Total: -57.10 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: 0.39 Total: -33.21 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -68.65 6.76 -61.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291252766.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.507 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds