Wall clock time and date at job start Mon Mar 30 2020 01:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46495 * 120.00330 * 2 1 4 4 C 1.50701 * 109.47353 * 270.00521 * 3 2 1 5 5 H 1.07992 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00086 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00038 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00225 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47146 * 60.00085 * 8 6 4 10 10 H 1.48500 * 109.47444 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46879 * 300.00223 * 8 6 4 12 12 C 1.34778 * 119.99754 * 180.02562 * 2 1 3 13 13 O 1.21628 * 120.00002 * 180.02562 * 12 2 1 14 14 C 1.47173 * 120.00317 * 0.07857 * 12 2 1 15 15 C 1.36611 * 125.16194 * 171.35062 * 14 12 2 16 16 C 1.36798 * 114.74458 * 179.97438 * 15 14 12 17 17 C 1.36620 * 114.74438 * 359.97438 * 16 15 14 18 18 C 1.47163 * 125.16242 * 179.97438 * 17 16 15 19 19 N 1.34773 * 120.00108 * 180.02562 * 18 17 16 20 20 O 1.21630 * 119.99704 * 0.02562 * 18 17 16 21 21 S 1.75836 * 125.15794 * 351.31137 * 14 12 2 22 22 H 1.09004 * 109.46991 * 263.44537 * 1 2 3 23 23 H 1.08997 * 109.47759 * 23.44336 * 1 2 3 24 24 H 1.08996 * 109.47912 * 143.45198 * 1 2 3 25 25 H 1.09003 * 109.46706 * 30.00464 * 3 2 1 26 26 H 1.08999 * 109.47637 * 150.00003 * 3 2 1 27 27 H 0.96995 * 120.00255 * 179.97438 * 7 6 4 28 28 H 1.07998 * 122.62722 * 0.22937 * 15 14 12 29 29 H 1.07996 * 122.62586 * 180.02562 * 16 15 14 30 30 H 0.97000 * 120.00003 * 0.02562 * 19 18 17 31 31 H 0.96999 * 119.99772 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2416 6 6 3.1259 2.8780 -1.6727 7 7 3.5534 3.6180 -0.6731 8 14 3.4378 3.4170 -3.4338 9 1 2.1405 3.5939 -4.1345 10 1 4.1803 4.7031 -3.4338 11 1 4.2412 2.3822 -4.1333 12 6 2.1388 -1.1672 -0.0005 13 8 3.3550 -1.1673 -0.0001 14 6 1.4029 -2.4418 -0.0028 15 6 1.9660 -3.6750 -0.1715 16 6 1.0815 -4.7180 -0.1360 17 6 -0.2210 -4.3568 0.0629 18 6 -1.3569 -5.2893 0.1395 19 7 -2.6035 -4.8178 0.3391 20 8 -1.1705 -6.4855 0.0225 21 16 -0.3343 -2.6084 0.2121 22 1 -0.3633 -0.1173 1.0210 23 1 -0.3634 0.9428 -0.4088 24 1 -0.3635 -0.8255 -0.6119 25 1 1.6084 2.0283 0.5139 26 1 3.1499 1.1383 0.5138 27 1 4.0302 4.4438 -0.8503 28 1 3.0268 -3.8158 -0.3172 29 1 1.3889 -5.7464 -0.2550 30 1 -2.7522 -3.8637 0.4320 31 1 -3.3522 -5.4325 0.3899 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338890570.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:15 Heat of formation + Delta-G solvation = -34.199138 kcal Electronic energy + Delta-G solvation = -17535.590501 eV Core-core repulsion = 14523.064606 eV Total energy + Delta-G solvation = -3012.525895 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.68203 -39.21977 -36.97275 -35.04844 -33.97900 -32.76515 -30.13854 -27.99943 -26.54017 -25.28056 -23.06576 -21.81853 -20.27903 -19.18090 -17.75853 -17.14414 -16.71725 -16.62935 -15.71364 -15.19920 -15.13727 -14.72894 -14.65744 -14.14046 -13.40009 -13.05024 -12.87889 -12.70659 -12.45480 -12.13607 -12.02529 -11.35454 -11.06228 -10.84554 -10.66075 -10.30255 -10.22871 -10.04662 -9.79183 -9.34499 -8.84571 -8.63308 -8.51434 -7.85890 -6.13140 -4.18914 0.13620 1.32275 1.69336 2.12486 3.02542 3.21138 3.27389 3.32426 3.34626 3.55454 3.71982 4.37719 4.68119 4.83237 5.18672 5.21611 5.26470 5.36023 5.56186 5.89650 5.92382 6.04190 6.25568 6.44020 6.85982 6.97149 7.25447 7.33280 7.81828 7.92699 8.09157 8.11963 8.69090 8.87119 9.46607 10.94980 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.037027 B = 0.004411 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.029022 B = 6346.440211 C = 6506.114102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.591 5.591 3 C 0.246 3.754 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.569 3.431 13 O -0.518 6.518 14 C -0.199 4.199 15 C -0.089 4.089 16 C -0.058 4.058 17 C -0.290 4.290 18 C 0.598 3.402 19 N -0.851 5.851 20 O -0.536 6.536 21 S 0.206 5.794 22 H 0.057 0.943 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.265 0.735 28 H 0.159 0.841 29 H 0.151 0.849 30 H 0.400 0.600 31 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 -11.515 2.988 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.322 5.322 3 C 0.128 3.872 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.354 3.646 13 O -0.396 6.396 14 C -0.321 4.321 15 C -0.121 4.121 16 C -0.091 4.091 17 C -0.410 4.410 18 C 0.384 3.616 19 N -0.415 5.415 20 O -0.414 6.414 21 S 0.475 5.525 22 H 0.076 0.924 23 H 0.116 0.884 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.176 0.824 29 H 0.169 0.831 30 H 0.229 0.771 31 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -13.181 -11.021 3.191 17.475 hybrid contribution 0.833 -0.372 -1.182 1.493 sum -12.348 -11.393 2.010 16.921 Atomic orbital electron populations 1.21901 0.81913 1.03109 1.00973 1.48100 1.05927 1.07819 1.70359 1.19425 0.92674 0.77191 0.97942 1.21362 1.37240 1.06509 0.92027 0.92349 1.24924 0.95118 0.96256 0.97600 1.69911 1.37994 1.14364 1.30898 0.86529 0.78442 0.77893 0.84413 1.20180 1.21085 1.20085 1.17071 0.86969 0.81900 0.78687 1.90814 1.12399 1.86223 1.50158 1.25367 0.96305 0.99175 1.11276 1.20552 1.02095 0.89592 0.99897 1.20504 0.90317 1.01000 0.97313 1.25319 0.97991 1.00658 1.17072 1.17130 0.82220 0.87013 0.75280 1.43673 1.08720 1.12233 1.76852 1.90840 1.84786 1.15538 1.50190 1.84405 1.04715 0.96239 1.67123 0.92425 0.88385 0.92049 0.94405 0.93346 0.92493 0.82396 0.83124 0.77139 0.76115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.91 59.84 0.53 1.51 16 2 N -0.59 -12.03 2.86 -184.34 -0.53 -12.56 16 3 C 0.25 6.16 5.13 -5.20 -0.03 6.13 16 4 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.57 11.78 7.65 -12.63 -0.10 11.69 16 13 O -0.52 -12.87 16.42 5.25 0.09 -12.78 16 14 C -0.20 -3.18 6.24 -36.54 -0.23 -3.41 16 15 C -0.09 -1.29 9.89 -40.69 -0.40 -1.69 16 16 C -0.06 -0.75 9.88 -40.69 -0.40 -1.15 16 17 C -0.29 -3.57 6.46 -36.54 -0.24 -3.81 16 18 C 0.60 7.18 8.07 -12.64 -0.10 7.08 16 19 N -0.85 -6.45 8.87 30.37 0.27 -6.18 16 20 O -0.54 -8.29 17.65 5.25 0.09 -8.20 16 21 S 0.21 2.34 17.13 -107.50 -1.84 0.50 16 22 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 23 H 0.10 1.41 8.02 -51.93 -0.42 0.99 16 24 H 0.06 0.79 4.61 -23.17 -0.11 0.68 16 25 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 26 H 0.05 1.37 7.42 -51.93 -0.39 0.98 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.16 2.22 8.05 -52.49 -0.42 1.80 16 29 H 0.15 1.76 8.04 -52.49 -0.42 1.34 16 30 H 0.40 2.17 7.93 -40.82 -0.32 1.85 16 31 H 0.41 2.34 8.93 -40.82 -0.36 1.97 16 LS Contribution 289.11 15.07 4.36 4.36 Total: -1.00 -34.30 289.11 -6.04 -40.34 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -2.81 Total: 0.16 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.38 Total: 3.10 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.48 Total: -43.74 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.18 Total: -20.98 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.84 Total: 0.50 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.30 -6.04 -40.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338890570.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.137 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds