Wall clock time and date at job start Mon Mar 30 2020 00:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99965 * 2 1 4 4 H 1.48494 * 109.47098 * 270.27120 * 3 2 1 5 5 H 1.48496 * 109.47278 * 30.27531 * 3 2 1 6 6 H 1.48501 * 109.47000 * 150.27018 * 3 2 1 7 7 C 1.37875 * 119.99392 * 180.26754 * 2 1 3 8 8 H 1.08003 * 119.99495 * 179.72272 * 7 2 1 9 9 C 1.50695 * 120.00520 * 359.73394 * 7 2 1 10 10 S 1.81401 * 109.47245 * 179.97438 * 9 7 2 11 11 C 1.81396 * 103.00132 * 174.93920 * 10 9 7 12 12 H 1.09008 * 110.27302 * 308.49192 * 11 10 9 13 13 C 1.54351 * 110.30235 * 70.66240 * 11 10 9 14 14 C 1.54347 * 102.39470 * 145.27732 * 13 11 10 15 15 C 1.51371 * 105.16943 * 333.65068 * 14 13 11 16 16 C 1.38235 * 109.75728 * 17.19295 * 15 14 13 17 17 C 1.38467 * 119.85671 * 180.02562 * 16 15 14 18 18 C 1.38153 * 120.24087 * 359.97271 * 17 16 15 19 19 C 1.38186 * 119.95303 * 0.02562 * 18 17 16 20 20 C 1.38264 * 119.91777 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 119.90931 * 179.97438 * 20 19 18 22 22 H 0.97005 * 119.99659 * 359.72977 * 1 2 3 23 23 H 1.09004 * 109.46772 * 299.99610 * 9 7 2 24 24 H 1.08999 * 109.47188 * 59.99542 * 9 7 2 25 25 H 1.09000 * 110.82049 * 263.49904 * 13 11 10 26 26 H 1.08993 * 110.82273 * 27.05124 * 13 11 10 27 27 H 1.08996 * 110.30606 * 214.72819 * 14 13 11 28 28 H 1.09005 * 110.38811 * 92.61326 * 14 13 11 29 29 H 1.07998 * 119.88211 * 179.97438 * 17 16 15 30 30 H 1.08001 * 120.02770 * 180.02562 * 18 17 16 31 31 H 1.07999 * 120.04641 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4910 2.0497 -1.4000 5 1 1.4496 2.6510 0.7058 6 1 3.5496 1.4385 0.6943 7 6 2.0045 -1.1941 -0.0056 8 1 3.0845 -1.1941 -0.0101 9 6 1.2510 -2.4991 -0.0056 10 16 2.4297 -3.8779 -0.0144 11 6 1.3574 -5.3326 0.1425 12 1 0.6800 -5.2130 0.9882 13 6 0.5581 -5.5517 -1.1596 14 6 0.4736 -7.0906 -1.2415 15 6 1.6837 -7.5946 -0.4846 16 6 2.1915 -6.5844 0.3107 17 6 3.3067 -6.8206 1.0968 18 6 3.9129 -8.0620 1.0894 19 6 3.4062 -9.0726 0.2948 20 6 2.2934 -8.8390 -0.4919 21 17 1.6573 -10.1086 -1.4906 22 1 -0.4850 0.8401 0.0040 23 1 0.6280 -2.5589 0.8868 24 1 0.6207 -2.5548 -0.8931 25 1 -0.4366 -5.1126 -1.0822 26 1 1.0958 -5.1470 -2.0170 27 1 0.5146 -7.4170 -2.2806 28 1 -0.4426 -7.4462 -0.7698 29 1 3.7040 -6.0316 1.7180 30 1 4.7824 -8.2425 1.7042 31 1 3.8792 -10.0434 0.2875 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017129.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:09 Heat of formation + Delta-G solvation = -13.610509 kcal Electronic energy + Delta-G solvation = -15185.903088 eV Core-core repulsion = 12582.686397 eV Total energy + Delta-G solvation = -2603.216691 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 268.038 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.14457 -37.59746 -36.60447 -35.29326 -32.20134 -30.78461 -30.04400 -28.41838 -25.20546 -23.71944 -22.16919 -22.01980 -18.72051 -17.79369 -17.42056 -16.81322 -16.48300 -16.17582 -15.66123 -14.78497 -14.65333 -14.55562 -14.26810 -14.18078 -14.09341 -13.22805 -12.93985 -12.75087 -12.72484 -12.55675 -12.46314 -12.18568 -12.02437 -11.84672 -11.79417 -11.47403 -10.75122 -10.67533 -9.65932 -9.59910 -8.48879 -8.33235 -6.46755 0.08856 0.19578 1.01709 1.19648 1.40183 1.40916 1.53370 1.97920 2.36506 2.61106 3.01094 3.30642 3.38278 3.85046 3.99864 4.10996 4.12482 4.39422 4.45314 4.50027 4.73510 4.79461 4.90521 4.93614 4.97781 4.99306 5.12850 5.21441 5.37392 5.50497 5.56587 5.79503 5.88776 6.60452 7.21359 8.78234 Molecular weight = 268.04amu Principal moments of inertia in cm(-1) A = 0.042104 B = 0.004096 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.853176 B = 6834.648356 C = 7316.728456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.016 3.984 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.094 3.906 10 S -0.298 6.298 11 C -0.016 4.016 12 H 0.092 0.908 13 C -0.111 4.111 14 C -0.069 4.069 15 C -0.089 4.089 16 C -0.077 4.077 17 C -0.101 4.101 18 C -0.103 4.103 19 C -0.105 4.105 20 C -0.033 4.033 21 Cl -0.067 7.067 22 H 0.270 0.730 23 H 0.012 0.988 24 H 0.018 0.982 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.166 0.834 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 -19.113 -0.067 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.053 4.053 10 S -0.067 6.067 11 C -0.145 4.145 12 H 0.110 0.890 13 C -0.151 4.151 14 C -0.107 4.107 15 C -0.091 4.091 16 C -0.078 4.078 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.060 4.060 21 Cl -0.038 7.038 22 H 0.079 0.921 23 H 0.030 0.970 24 H 0.036 0.964 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.146 0.854 30 H 0.183 0.817 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.634 -19.031 -0.229 19.588 hybrid contribution -1.315 1.068 0.106 1.698 sum 3.319 -17.963 -0.122 18.267 Atomic orbital electron populations 1.70059 1.07639 1.28539 1.50072 1.25885 0.95857 1.02942 0.93774 0.85298 0.78515 0.77624 0.78765 1.19445 1.20010 1.18990 1.21002 0.93399 0.90313 1.52902 0.92113 1.20718 0.94061 0.92556 0.97949 1.86506 1.21073 1.02038 1.97072 1.22607 0.97531 0.92578 1.01741 0.88990 1.22671 1.00411 0.96498 0.95486 1.21049 0.95312 0.93404 1.00940 1.20475 0.98182 0.92149 0.98321 1.19991 0.96636 0.93131 0.98086 1.21033 0.94292 0.98383 0.98326 1.21325 1.00563 0.91129 0.99033 1.21312 0.94393 1.01350 0.95338 1.20575 0.97911 0.88822 0.98648 1.98353 1.86528 1.50485 1.68479 0.92082 0.96961 0.96406 0.89859 0.90692 0.88940 0.88285 0.85427 0.81691 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.23 13.29 21.45 0.28 -53.94 16 2 C 0.02 0.92 5.46 84.65 0.46 1.38 16 3 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -30.82 9.13 25.60 0.23 -30.58 16 8 H 0.06 3.48 7.71 -2.91 -0.02 3.45 16 9 C 0.09 5.03 5.66 71.23 0.40 5.44 16 10 S -0.30 -13.05 20.75 -56.49 -1.17 -14.22 16 11 C -0.02 -0.56 3.36 30.52 0.10 -0.46 16 12 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 13 C -0.11 -3.41 6.56 31.51 0.21 -3.20 16 14 C -0.07 -1.69 6.47 30.52 0.20 -1.49 16 15 C -0.09 -2.36 6.05 -19.57 -0.12 -2.47 16 16 C -0.08 -2.31 5.61 -19.60 -0.11 -2.42 16 17 C -0.10 -2.70 9.75 22.30 0.22 -2.49 16 18 C -0.10 -2.05 10.04 22.24 0.22 -1.83 16 19 C -0.11 -2.03 9.83 22.26 0.22 -1.81 16 20 C -0.03 -0.76 6.32 22.36 0.14 -0.62 16 21 Cl -0.07 -1.36 28.71 -2.72 -0.08 -1.44 16 22 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 23 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.07 2.49 7.88 -2.39 -0.02 2.47 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 28 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -62.69 294.77 4.36 -58.33 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.12 Total: 6.16 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 2.18 Total: -40.57 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.28 Total: -53.94 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -13.05 SS G_CDS: -1.17 Total: -14.22 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -62.69 4.36 -58.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017129.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.721 kcal (2) G-P(sol) polarization free energy of solvation -62.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds