Wall clock time and date at job start Mon Mar 30 2020 00:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00193 * 2 1 4 4 H 1.48495 * 109.47288 * 239.99967 * 3 2 1 5 5 H 1.48507 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47205 * 119.99512 * 3 2 1 7 7 C 1.37877 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99834 * 0.02562 * 7 2 1 10 10 C 1.53494 * 114.20316 * 179.97438 * 9 7 2 11 11 N 1.47067 * 87.98171 * 220.14935 * 10 9 7 12 12 S 1.65607 * 136.05592 * 207.08747 * 11 10 9 13 13 O 1.42097 * 106.40132 * 336.45822 * 12 11 10 14 14 O 1.42107 * 106.39904 * 203.54094 * 12 11 10 15 15 C 1.76199 * 107.21942 * 89.99994 * 12 11 10 16 16 C 1.38671 * 120.41783 * 269.72268 * 15 12 11 17 17 C 1.38625 * 118.41901 * 179.78095 * 16 15 12 18 18 C 1.38228 * 119.16122 * 0.51239 * 17 16 15 19 19 N 1.31855 * 120.76424 * 359.73003 * 18 17 16 20 20 C 1.31889 * 121.72558 * 359.97438 * 19 18 17 21 21 C 1.47065 * 87.88697 * 27.34367 * 11 10 9 22 22 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 23 23 H 1.08992 * 113.28034 * 313.06789 * 9 7 2 24 24 H 1.08994 * 113.46895 * 105.37387 * 10 9 7 25 25 H 1.08997 * 113.47060 * 334.92946 * 10 9 7 26 26 H 1.07997 * 120.79138 * 0.02562 * 16 15 12 27 27 H 1.08006 * 120.41878 * 180.21427 * 17 16 15 28 28 H 1.08003 * 119.61960 * 179.74332 * 18 17 16 29 29 H 1.08001 * 119.61872 * 180.02562 * 20 19 18 30 30 H 1.09006 * 113.46617 * 87.43726 * 21 11 10 31 31 H 1.08999 * 113.46785 * 217.87645 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.1487 -3.7442 0.0005 11 7 1.2072 -4.3593 -0.9471 12 16 0.7459 -5.9008 -1.3387 13 8 1.8188 -6.7502 -0.9560 14 8 0.2354 -5.8425 -2.6637 15 6 -0.6143 -6.3182 -0.2993 16 6 -0.3990 -6.9240 0.9293 17 6 -1.4988 -7.2301 1.7157 18 6 -2.7651 -6.9334 1.2475 19 7 -2.9325 -6.3614 0.0713 20 6 -1.9092 -6.0508 -0.7007 21 6 0.8604 -3.0033 -1.3985 22 1 -0.4850 0.8401 -0.0004 23 1 0.4432 -2.5302 0.7316 24 1 2.1876 -4.2513 0.9645 25 1 3.1372 -3.5666 -0.4231 26 1 0.6019 -7.1482 1.2674 27 1 -1.3682 -7.6991 2.6798 28 1 -3.6274 -7.1725 1.8523 29 1 -2.0855 -5.5826 -1.6578 30 1 1.5093 -2.6304 -2.1911 31 1 -0.1983 -2.8791 -1.6264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594826907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:02 Heat of formation + Delta-G solvation = -20.218361 kcal Electronic energy + Delta-G solvation = -18144.513670 eV Core-core repulsion = 15132.594027 eV Total energy + Delta-G solvation = -3011.919643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15434 -39.92405 -38.40579 -37.06204 -34.56674 -33.77412 -32.55882 -30.10763 -26.62608 -26.40350 -25.11361 -24.81133 -21.66411 -20.00287 -19.23935 -18.60224 -18.14345 -17.78334 -17.65813 -16.62501 -16.42029 -15.77794 -15.37997 -15.17611 -14.70498 -14.50854 -14.35228 -13.76333 -13.50723 -13.36856 -13.27421 -13.26306 -13.10133 -12.74522 -12.43731 -12.30129 -12.10097 -11.38923 -11.00067 -10.97066 -10.71051 -10.53951 -10.49045 -9.87281 -8.12160 -6.22097 -0.84048 -0.43824 0.06179 1.50889 1.51725 1.58741 1.87986 2.45890 2.49601 2.69973 2.97677 3.20415 3.31964 3.70503 3.76378 3.90486 4.14289 4.25093 4.41975 4.55338 4.63407 4.68877 4.81070 4.83832 4.88356 5.03541 5.12168 5.46353 5.64956 5.85806 5.89500 6.31377 6.65709 6.87569 7.47196 8.97325 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.005763 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.753308 B = 4857.572931 C = 5360.523513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.021 3.979 10 C 0.134 3.866 11 N -1.048 6.048 12 S 2.735 3.265 13 O -0.976 6.976 14 O -0.985 6.985 15 C -0.736 4.736 16 C 0.011 3.989 17 C -0.182 4.182 18 C 0.143 3.857 19 N -0.520 5.520 20 C 0.183 3.817 21 C 0.134 3.866 22 H 0.262 0.738 23 H 0.043 0.957 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.167 0.833 27 H 0.189 0.811 28 H 0.203 0.797 29 H 0.166 0.834 30 H 0.074 0.926 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 -12.301 4.478 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.000 4.000 10 C 0.010 3.990 11 N -0.889 5.889 12 S 2.829 3.171 13 O -0.967 6.967 14 O -0.976 6.976 15 C -0.826 4.826 16 C -0.016 4.016 17 C -0.201 4.201 18 C -0.013 4.013 19 N -0.230 5.230 20 C 0.025 3.975 21 C 0.008 3.992 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.184 0.816 27 H 0.206 0.794 28 H 0.220 0.780 29 H 0.184 0.816 30 H 0.092 0.908 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.664 -12.801 3.490 13.533 hybrid contribution 0.434 0.916 0.444 1.107 sum -2.229 -11.884 3.934 12.716 Atomic orbital electron populations 1.70059 1.07464 1.27711 1.50719 1.25766 0.95504 1.02544 0.94299 0.85653 0.78312 0.78897 0.79025 1.19499 1.21673 1.19382 1.21329 0.93553 0.90760 1.50889 0.91232 1.20428 0.94914 0.92021 0.92654 1.22778 0.93186 0.91963 0.91089 1.59780 1.54879 1.19905 1.54286 1.00323 0.73147 0.70852 0.72803 1.93508 1.53365 1.65359 1.84436 1.93513 1.81752 1.86505 1.35815 1.31847 1.17276 1.18137 1.15330 1.21752 1.02403 0.87806 0.89609 1.22736 0.92569 1.01976 1.02863 1.23924 0.98995 0.87786 0.90581 1.67876 1.34706 1.13323 1.07080 1.22651 0.86868 0.89866 0.98151 1.22911 0.99049 0.76347 1.00851 0.92864 0.93854 0.90245 0.89670 0.81583 0.79398 0.78013 0.81647 0.90763 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.59 13.26 21.45 0.28 -50.30 16 2 C 0.02 0.97 5.46 84.66 0.46 1.43 16 3 Si 0.96 40.65 29.54 68.60 2.03 42.67 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.53 -26.09 8.83 25.60 0.23 -25.86 16 8 H 0.07 3.28 7.81 -2.91 -0.02 3.26 16 9 C 0.02 0.95 3.79 -11.12 -0.04 0.91 16 10 C 0.13 4.94 8.29 83.18 0.69 5.63 16 11 N -1.05 -39.01 4.23 -549.47 -2.32 -41.34 16 12 S 2.73 94.22 6.29 -56.49 -0.36 93.87 16 13 O -0.98 -35.29 17.36 -128.00 -2.22 -37.51 16 14 O -0.99 -38.60 17.31 -128.00 -2.22 -40.81 16 15 C -0.74 -22.18 5.99 22.36 0.13 -22.04 16 16 C 0.01 0.27 9.65 22.47 0.22 0.48 16 17 C -0.18 -3.32 10.11 22.36 0.23 -3.09 16 18 C 0.14 2.92 11.18 84.69 0.95 3.86 16 19 N -0.52 -14.82 10.36 -195.84 -2.03 -16.85 16 20 C 0.18 5.69 10.69 84.67 0.90 6.59 16 21 C 0.13 5.69 8.31 83.27 0.69 6.38 16 22 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 23 H 0.04 2.15 8.11 -2.39 -0.02 2.13 16 24 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.09 2.98 8.10 -2.39 -0.02 2.96 16 26 H 0.17 3.38 7.70 -2.91 -0.02 3.35 16 27 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 28 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.17 5.05 7.63 -2.91 -0.02 5.03 16 30 H 0.07 3.14 8.10 -2.38 -0.02 3.12 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -65.69 290.13 -1.24 -66.93 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.14 Total: 9.05 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 4.46 Total: -25.71 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -4.07 Total: -108.49 kcal Atomic # 8 Polarization: -73.89 SS G_CDS: -4.44 Total: -78.33 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 16 Polarization: 94.22 SS G_CDS: -0.36 Total: 93.87 kcal Total: -65.69 -1.24 -66.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594826907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.711 kcal (2) G-P(sol) polarization free energy of solvation -65.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds