Wall clock time and date at job start Mon Mar 30 2020 00:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99997 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99990 * 3 2 1 7 7 C 1.38751 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99894 * 179.97438 * 7 2 1 9 9 O 1.34923 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.34313 * 116.99743 * 179.97438 * 9 7 2 11 11 O 1.21209 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99940 * 180.02562 * 10 9 7 13 13 H 1.09008 * 115.54890 * 325.66564 * 12 10 9 14 14 C 1.52996 * 117.50507 * 111.37092 * 12 10 9 15 15 C 1.52998 * 60.00102 * 107.49124 * 14 12 10 16 16 H 1.08996 * 117.52032 * 107.48201 * 15 14 12 17 17 C 1.50702 * 117.50285 * 252.51429 * 15 14 12 18 18 C 1.38261 * 119.99744 * 8.62201 * 17 15 14 19 19 C 1.38209 * 120.06985 * 179.97438 * 18 17 15 20 20 C 1.38264 * 120.07190 * 0.02562 * 19 18 17 21 21 C 1.38372 * 119.99648 * 0.02562 * 20 19 18 22 22 F 1.35095 * 120.03236 * 180.02562 * 21 20 19 23 23 C 1.38370 * 120.00077 * 188.34301 * 17 15 14 24 24 F 1.35100 * 120.03431 * 359.97438 * 23 17 15 25 25 H 0.96998 * 120.00069 * 180.02562 * 1 2 3 26 26 H 1.08995 * 117.50732 * 214.97826 * 14 12 10 27 27 H 1.09002 * 117.49522 * 0.02562 * 14 12 10 28 28 H 1.07994 * 119.96294 * 359.97438 * 18 17 15 29 29 H 1.08002 * 119.96910 * 180.02562 * 19 18 17 30 30 H 1.08001 * 120.00039 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 1.2834 2.7465 -0.0006 5 1 3.1022 1.6964 -1.2125 6 1 3.1022 1.6964 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4331 0.0001 12 6 1.3810 -4.8392 0.0000 13 1 0.4437 -4.8896 0.5543 14 6 1.5013 -5.6930 -1.2639 15 6 2.2694 -6.0848 -0.0001 16 1 1.9168 -6.9545 0.5542 17 6 3.7618 -5.8750 0.0004 18 6 4.3633 -5.1857 -1.0362 19 6 5.7317 -4.9920 -1.0370 20 6 6.5022 -5.4876 -0.0014 21 6 5.9033 -6.1789 1.0370 22 9 6.6554 -6.6630 2.0494 23 6 4.5293 -6.3673 1.0412 24 9 3.9415 -7.0357 2.0575 25 1 -0.4850 -0.8400 0.0004 26 1 0.6433 -6.3051 -1.5415 27 1 2.0757 -5.2836 -2.0950 28 1 3.7632 -4.7982 -1.8461 29 1 6.1998 -4.4529 -1.8473 30 1 7.5714 -5.3352 -0.0030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745236023.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:17 Heat of formation + Delta-G solvation = -113.447975 kcal Electronic energy + Delta-G solvation = -20102.944041 eV Core-core repulsion = 16500.848522 eV Total energy + Delta-G solvation = -3602.095520 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.070 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.21398 -48.29908 -40.05651 -38.49117 -36.66976 -34.87932 -32.16276 -30.54135 -29.98878 -25.78056 -24.25527 -23.54245 -22.51915 -20.91677 -19.68111 -18.17726 -17.83872 -17.24634 -16.73270 -16.12191 -16.03961 -15.25424 -14.96794 -14.72946 -14.63971 -14.34290 -14.02596 -13.81094 -13.72172 -12.77288 -12.54164 -12.33562 -11.98516 -11.45759 -11.26802 -11.04980 -10.96308 -10.62617 -10.56945 -10.27589 -10.21536 -9.81212 -9.29011 -8.58832 -8.45190 -8.05065 -6.79418 -4.16005 1.19724 1.27511 2.97982 3.25627 3.33427 3.48009 3.66106 3.81009 3.97417 4.20605 4.35790 4.54441 4.67904 4.79145 4.96932 5.02039 5.15704 5.19005 5.33079 5.35664 5.68040 5.83671 5.97874 5.99670 6.05328 6.21207 6.39585 6.53372 6.61426 7.01584 7.56516 8.36635 8.44456 9.00450 9.70189 10.65309 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.005773 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.861796 B = 4848.932047 C = 5426.264210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.013 3.987 3 Si 1.098 2.902 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.461 4.461 8 H 0.088 0.912 9 O -0.231 6.231 10 C 0.421 3.579 11 O -0.535 6.535 12 C -0.132 4.132 13 H 0.129 0.871 14 C -0.145 4.145 15 C -0.096 4.096 16 H 0.125 0.875 17 C -0.046 4.046 18 C -0.025 4.025 19 C -0.109 4.109 20 C -0.127 4.127 21 C 0.049 3.951 22 F -0.138 7.138 23 C 0.071 3.929 24 F -0.134 7.134 25 H 0.281 0.719 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 -11.932 -3.073 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.192 4.192 3 Si 0.921 3.079 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.536 4.536 8 H 0.106 0.894 9 O -0.138 6.138 10 C 0.268 3.732 11 O -0.432 6.432 12 C -0.151 4.151 13 H 0.147 0.853 14 C -0.182 4.182 15 C -0.114 4.114 16 H 0.143 0.857 17 C -0.047 4.047 18 C -0.044 4.044 19 C -0.127 4.127 20 C -0.145 4.145 21 C 0.029 3.971 22 F -0.117 7.117 23 C 0.051 3.949 24 F -0.113 7.113 25 H 0.091 0.909 26 H 0.130 0.870 27 H 0.123 0.877 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.858 -10.254 -2.987 12.692 hybrid contribution 0.173 -1.795 0.599 1.900 sum 7.030 -12.049 -2.388 14.153 Atomic orbital electron populations 1.70555 1.06620 1.31554 1.42616 1.26608 0.96755 1.01180 0.94660 0.83089 0.74418 0.73075 0.77274 1.19837 1.20703 1.20705 1.22108 0.93750 0.81121 1.56659 0.89426 1.83581 1.40522 1.14075 1.75660 1.21924 0.86138 0.85683 0.79495 1.90584 1.14913 1.87045 1.50702 1.21682 1.01190 0.88184 1.04036 0.85269 1.23159 1.02343 1.01360 0.91289 1.20964 0.89161 0.98313 1.02969 0.85701 1.18747 0.93493 0.98753 0.93740 1.20741 0.94208 0.92367 0.97044 1.20874 0.93544 0.99714 0.98564 1.20922 1.00949 0.99131 0.93543 1.17470 0.87306 1.03330 0.89000 1.91471 1.75641 1.86411 1.58142 1.17296 0.89411 1.00290 0.87895 1.91460 1.84163 1.78069 1.57587 0.90932 0.87039 0.87698 0.85151 0.84818 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.98 13.69 55.48 0.76 -25.22 16 2 C 0.01 0.38 5.49 -17.53 -0.10 0.28 16 3 Si 1.10 24.30 29.92 -169.99 -5.09 19.21 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.46 -13.41 9.64 30.92 0.30 -13.12 16 8 H 0.09 2.59 6.86 -52.49 -0.36 2.23 16 9 O -0.23 -6.38 9.15 -20.72 -0.19 -6.57 16 10 C 0.42 9.88 7.55 36.00 0.27 10.16 16 11 O -0.54 -13.14 10.94 -19.05 -0.21 -13.35 16 12 C -0.13 -2.30 6.30 -91.78 -0.58 -2.87 16 13 H 0.13 2.04 8.14 -51.92 -0.42 1.61 16 14 C -0.14 -1.93 9.58 -26.73 -0.26 -2.19 16 15 C -0.10 -1.44 5.79 -91.77 -0.53 -1.97 16 16 H 0.13 1.61 7.87 -51.93 -0.41 1.20 16 17 C -0.05 -0.77 4.37 -104.56 -0.46 -1.23 16 18 C -0.03 -0.41 6.17 -39.58 -0.24 -0.65 16 19 C -0.11 -1.56 10.04 -39.58 -0.40 -1.96 16 20 C -0.13 -1.80 10.02 -39.52 -0.40 -2.19 16 21 C 0.05 0.80 7.31 -39.36 -0.29 0.51 16 22 F -0.14 -2.25 17.18 2.25 0.04 -2.21 16 23 C 0.07 1.22 7.25 -39.37 -0.29 0.94 16 24 F -0.13 -2.32 16.53 2.25 0.04 -2.28 16 25 H 0.28 8.36 7.97 -40.82 -0.33 8.03 16 26 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.10 1.40 6.17 -51.93 -0.32 1.08 16 28 H 0.13 2.04 5.78 -52.49 -0.30 1.73 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 275.30 15.07 4.15 4.15 Total: -1.00 -32.58 275.30 -5.66 -38.24 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -2.20 Total: 2.32 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.96 Total: -14.29 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.76 Total: -25.22 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.40 Total: -19.92 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.08 Total: -4.50 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.09 Total: 19.21 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.58 -5.66 -38.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745236023.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.203 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds