Wall clock time and date at job start Mon Mar 30 2020 00:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86798 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99997 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99990 * 3 2 1 7 7 C 1.38751 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99894 * 179.97438 * 7 2 1 9 9 O 1.34923 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.34313 * 116.99743 * 179.97438 * 9 7 2 11 11 O 1.21209 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99940 * 180.02562 * 10 9 7 13 13 H 1.09008 * 115.54890 * 325.66564 * 12 10 9 14 14 C 1.52996 * 117.50507 * 111.37092 * 12 10 9 15 15 C 1.52998 * 60.00102 * 107.49124 * 14 12 10 16 16 H 1.08996 * 117.52032 * 107.48201 * 15 14 12 17 17 C 1.50702 * 117.50285 * 252.51429 * 15 14 12 18 18 C 1.38261 * 119.99744 * 8.62201 * 17 15 14 19 19 C 1.38209 * 120.06985 * 179.97438 * 18 17 15 20 20 C 1.38264 * 120.07190 * 0.02562 * 19 18 17 21 21 C 1.38372 * 119.99648 * 0.02562 * 20 19 18 22 22 F 1.35095 * 120.03236 * 180.02562 * 21 20 19 23 23 C 1.38370 * 120.00077 * 188.34301 * 17 15 14 24 24 F 1.35100 * 120.03431 * 359.97438 * 23 17 15 25 25 H 0.96998 * 120.00069 * 180.02562 * 1 2 3 26 26 H 1.08995 * 117.50732 * 214.97826 * 14 12 10 27 27 H 1.09002 * 117.49522 * 0.02562 * 14 12 10 28 28 H 1.07994 * 119.96294 * 359.97438 * 18 17 15 29 29 H 1.08002 * 119.96910 * 180.02562 * 19 18 17 30 30 H 1.08001 * 120.00039 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 1.2834 2.7465 -0.0006 5 1 3.1022 1.6964 -1.2125 6 1 3.1022 1.6964 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4965 0.0005 11 8 3.2755 -3.4331 0.0001 12 6 1.3810 -4.8392 0.0000 13 1 0.4437 -4.8896 0.5543 14 6 1.5013 -5.6930 -1.2639 15 6 2.2694 -6.0848 -0.0001 16 1 1.9168 -6.9545 0.5542 17 6 3.7618 -5.8750 0.0004 18 6 4.3633 -5.1857 -1.0362 19 6 5.7317 -4.9920 -1.0370 20 6 6.5022 -5.4876 -0.0014 21 6 5.9033 -6.1789 1.0370 22 9 6.6554 -6.6630 2.0494 23 6 4.5293 -6.3673 1.0412 24 9 3.9415 -7.0357 2.0575 25 1 -0.4850 -0.8400 0.0004 26 1 0.6433 -6.3051 -1.5415 27 1 2.0757 -5.2836 -2.0950 28 1 3.7632 -4.7982 -1.8461 29 1 6.1998 -4.4529 -1.8473 30 1 7.5714 -5.3352 -0.0030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745236023.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:16 Heat of formation + Delta-G solvation = -131.821874 kcal Electronic energy + Delta-G solvation = -20103.740793 eV Core-core repulsion = 16500.848522 eV Total energy + Delta-G solvation = -3602.892272 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.070 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.50123 -49.59099 -41.63820 -40.06022 -38.10930 -36.70115 -34.27639 -31.76136 -31.21540 -27.67631 -25.63446 -25.13664 -23.76861 -22.22248 -21.28196 -20.13216 -19.28429 -18.61443 -18.04932 -17.67940 -17.34023 -17.04288 -16.66003 -16.05350 -15.92227 -15.83284 -15.56600 -15.35150 -15.18722 -14.20150 -13.89514 -13.50078 -13.32902 -13.17989 -13.03062 -12.53386 -12.33650 -12.17817 -11.93927 -11.87429 -11.79905 -11.61317 -11.00269 -10.66962 -9.70633 -9.41868 -9.01361 -6.40538 -0.01950 0.02333 1.29412 1.47553 1.65620 1.78834 2.16202 2.36352 2.58724 2.72565 2.91837 3.04391 3.28257 3.48183 3.56469 3.73022 3.86743 3.95536 4.15638 4.21342 4.47754 4.69297 4.74337 4.82402 4.87379 4.94820 5.00712 5.20894 5.32953 5.38991 5.81251 6.17066 6.42514 6.90721 7.66395 8.45131 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.005773 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.861796 B = 4848.932047 C = 5426.264210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.029 4.029 3 Si 1.142 2.858 4 H -0.266 1.266 5 H -0.261 1.261 6 H -0.268 1.268 7 C -0.486 4.486 8 H 0.074 0.926 9 O -0.265 6.265 10 C 0.422 3.578 11 O -0.547 6.547 12 C -0.163 4.163 13 H 0.145 0.855 14 C -0.111 4.111 15 C -0.090 4.090 16 H 0.148 0.852 17 C -0.063 4.063 18 C -0.042 4.042 19 C -0.107 4.107 20 C -0.120 4.120 21 C 0.034 3.966 22 F -0.141 7.141 23 C 0.049 3.951 24 F -0.140 7.140 25 H 0.266 0.734 26 H 0.155 0.845 27 H 0.104 0.896 28 H 0.131 0.869 29 H 0.163 0.837 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.684 -12.502 -3.998 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.227 4.227 3 Si 0.957 3.043 4 H -0.190 1.190 5 H -0.185 1.185 6 H -0.193 1.193 7 C -0.562 4.562 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.270 3.730 11 O -0.444 6.444 12 C -0.181 4.181 13 H 0.162 0.838 14 C -0.147 4.147 15 C -0.108 4.108 16 H 0.166 0.834 17 C -0.064 4.064 18 C -0.060 4.060 19 C -0.125 4.125 20 C -0.138 4.138 21 C 0.014 3.986 22 F -0.120 7.120 23 C 0.029 3.971 24 F -0.119 7.119 25 H 0.075 0.925 26 H 0.172 0.828 27 H 0.123 0.877 28 H 0.149 0.851 29 H 0.180 0.820 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.775 -10.870 -3.915 13.926 hybrid contribution 0.010 -1.805 0.875 2.006 sum 7.785 -12.675 -3.040 15.182 Atomic orbital electron populations 1.70678 1.07430 1.30548 1.45103 1.28294 0.96854 1.04460 0.93119 0.82626 0.73873 0.69178 0.78583 1.18979 1.18546 1.19336 1.22221 0.93348 0.82519 1.58110 0.90798 1.83631 1.41411 1.14800 1.77593 1.23202 0.86402 0.86683 0.76689 1.90567 1.15819 1.87631 1.50336 1.21786 1.02306 0.85495 1.08553 0.83770 1.23412 1.02905 0.98728 0.89687 1.21157 0.88151 0.97191 1.04273 0.83396 1.19002 0.94504 0.99052 0.93834 1.20951 0.95254 0.92686 0.97146 1.21282 0.93088 0.98938 0.99204 1.21297 1.02574 0.97571 0.92367 1.17778 0.87251 1.03974 0.89628 1.91458 1.75611 1.86545 1.58410 1.17575 0.90088 1.01212 0.88236 1.91434 1.84317 1.78284 1.57861 0.92524 0.82768 0.87740 0.85121 0.81982 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.40 13.69 21.62 0.30 -54.10 16 2 C -0.03 -1.63 5.49 84.87 0.47 -1.16 16 3 Si 1.14 48.49 29.92 68.60 2.05 50.54 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.49 -28.98 9.64 67.94 0.66 -28.32 16 8 H 0.07 4.47 6.86 -2.91 -0.02 4.45 16 9 O -0.26 -15.03 9.15 14.81 0.14 -14.89 16 10 C 0.42 19.98 7.55 71.23 0.54 20.52 16 11 O -0.55 -26.96 10.94 20.78 0.23 -26.74 16 12 C -0.16 -5.46 6.30 -11.54 -0.07 -5.53 16 13 H 0.14 4.37 8.14 -2.38 -0.02 4.35 16 14 C -0.11 -2.64 9.58 30.59 0.29 -2.35 16 15 C -0.09 -2.51 5.79 -11.54 -0.07 -2.58 16 16 H 0.15 3.42 7.87 -2.39 -0.02 3.40 16 17 C -0.06 -2.02 4.37 -19.83 -0.09 -2.11 16 18 C -0.04 -1.29 6.17 22.27 0.14 -1.16 16 19 C -0.11 -2.85 10.04 22.27 0.22 -2.62 16 20 C -0.12 -3.14 10.02 22.31 0.22 -2.92 16 21 C 0.03 1.06 7.31 22.41 0.16 1.22 16 22 F -0.14 -4.50 17.18 44.97 0.77 -3.73 16 23 C 0.05 1.65 7.25 22.41 0.16 1.81 16 24 F -0.14 -4.79 16.53 44.97 0.74 -4.05 16 25 H 0.27 16.38 7.97 -92.71 -0.74 15.64 16 26 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.10 2.53 6.17 -2.39 -0.01 2.52 16 28 H 0.13 3.92 5.78 -2.91 -0.02 3.90 16 29 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -72.65 275.30 8.09 -64.56 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.23 Total: 13.59 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 2.64 Total: -25.19 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.30 Total: -54.10 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: 0.36 Total: -41.63 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 1.52 Total: -7.77 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.05 Total: 50.54 kcal Total: -72.65 8.09 -64.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745236023.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.259 kcal (2) G-P(sol) polarization free energy of solvation -72.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds